Gene detail

Detail information of GWHGAAZE006567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99664.1	1.0807E-159	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SY89\|Y1661_ARATH	2E-125	Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 (Precursor)
trEMBL	tr\|A0A068TUN3\|A0A068TUN3_COFCA	4E-160	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT1G61610.1	4E-100	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27860105	27869661	+
GWHAAZE00000002	mRNA	27860105	27869661	+
GWHAAZE00000002	exon	27860105	27860111	+
GWHAAZE00000002	exon	27860187	27861428	+
GWHAAZE00000002	exon	27866539	27866748	+
GWHAAZE00000002	exon	27867217	27867711	+
GWHAAZE00000002	exon	27868281	27868345	+
GWHAAZE00000002	exon	27868441	27868625	+
GWHAAZE00000002	exon	27868900	27869047	+
GWHAAZE00000002	exon	27869359	27869661	+
GWHAAZE00000002	CDS	27860105	27860111	+
GWHAAZE00000002	CDS	27860187	27861428	+
GWHAAZE00000002	CDS	27866539	27866748	+
GWHAAZE00000002	CDS	27867217	27867711	+
GWHAAZE00000002	CDS	27868281	27868345	+
GWHAAZE00000002	CDS	27868441	27868625	+
GWHAAZE00000002	CDS	27868900	27869047	+
GWHAAZE00000002	CDS	27869359	27869661	+

Transcript Sequence
>GWHTAAZE006575 ATGAAACCAAACACAATTAGACATGGCCAATTGATAAGAGATGGTGAAACAATTATCTCTTCAGGGGGAAATTTTGCACTTGGGTTCTTCAGCCCTGGTGACTCTCTGTTCAGATATGTTGGAATTTGGTATAACAAAATCCCACAACCACCTGTCATATGGGTGGCTAATAGAGATATTCCGGTCACCGGTTCCGGTGGGATTTTAACCATAGGAGATGATGGTAATTTAGTGGTTTTAAATGGAAATGGAAATTCAGTCTGGTCAAGTAATGCTTCATCTCTCTCAGACAATTCATTAAACAACTCAACTGCAGCTATTTTAAAGGATACTGGGGATCTAATTCTGTCTATCGGTGAAAATATTGGTGATGATATTAGTGGGGCTTTGTGGCGGAGTTTCGATAATCCAACGGATACTTATTTGCCTGGTATGAGAGTTAAAGTTAATTCTCAAGATGGAGAGAATAGGGCCTTTAGTTCATGGAGAAGTGCTAATGACCCTTCACCTGGGAGTTTTTCAATGGGGGTTGATCCTCGAGGATCTCCGCAGATTGTGGTATGGGAGGGGCTAAATCGACGGTGGAGAAGTGGGCATTGGAATGGGATAATGTTTATTGGTGTTCCTCATGTAAGAGCCACTTATTTATATGGATTTGGGCTTGATGAAGTAGGTAATGATAAGTATTTTACGTATACTTTATCAAACACTTCTGATTTGATAAGGTTCTTGATTAGATGGGATGGAGTTGAGGAGCAGTTTAGATGGGATGAAGGTAGAAGGGAGTGGAATTTGATTCAATCACAGCCTGCTAATGAGTGTGAATTTTATAACAAATGTGGTGCTTTTGGGAAATGCAGTGCTAGTGATTCTCCAATTTGTAGTTGTTTAGAAGGGTTTGTGCCAAACTTTTTGGATCAATGGAATAATGGGAATTGGTCAGGTGGGTGTGTTAGGAGGACAGAGCTGGAGTGTAAGAGGAGAAATGGGAGTTCAATTGAGGAGGAAGGCGTGGAAGAAGATGGGTTTTTGAAGGTTGAGGGGGTGAAGTTGCCTGATTATGTGGATTGGATCGGGTCCGAGGATCTTGAGGATTGTAAGACCAAGTGTTTGAGGAATTGCTCGTGTACTGCTTATGCGTGTGTAAGTGGAATCAATTGCATGATTTGGAGTGGGGATTTGGTTGATGTTGAGCAATTTGAAGATGGTAGGAACAATCTTTACATTCGCCTCGCTCATTCTGAATTAGTAAACCAAACTCTCATATCCGCTAGTCAAAATTTTGAACTGGGGTTCTTCAGCCCTGATAATTCGACTAAATGGTATATTGGGATATGGCACAAGAACATTATTCAACCCAAACATGTATGGGTAGTAAATAGGGAAAGCCCAGTCAATCATACAGACTCTGCTTCAAGTCTAACTATAGGCATCGATGGGAACCTCGAACTTCTTGATGGATTTTTGCAAATTTTGGGATTAGACCAGAAAACCAACAAATGGTTCCTTAACTGGAAAGCACCCGAAAAACCATGTGATATTTATGGAATTTGCGGACCTTTTGGGGTTTGTAATAAGAAACATTCTCGTATTTGTGAGTGCATCAAAGGTTTTATACCAAATTCAAATGAGGAATGGAGCAAAGGGAATTGGATAAGCGGGTGTGTGAAGCAAACTGAACTTTTTTGTGGCAAGAATGCGAGTAATTTAGCCCATGTAAGAACTAAAAAAGATTGGTTTTGGAAGATCAGTGGAGTTAAACTGCCAGATCATATCGAATATTTGAACAAAGATGCGCCAGGTTGCAGAGAATGGTGCTTGAATAACTGCTCTTGCTTGGGTTATGCATATACTGGGCTTGGGTGTATGGTTTGGACTACAGATCTTATTGATATTCAGTGGTTCTCACTTGCGGGGGAGGATCTATTTCTTCGCCTTGCACATTCAGAACTCGCTGCCACCAACAACTTCAGCAAGTCAAACGAACTTGGCATTGGAGATTTTGGCACCGTCTATAAAGGAAAGCTGGAAGATGGACTTGAAATTGCAGTGAAAAGACTTTCTAGTCACCCAACGCAAGGCGTCGAAGAGTTCAAGAATGAAATTAATCTTATAGTGAAAAGACAAATATCAGATTTTGGATTGGCAAGAACTTTTGAGATTACACAAGAGCTTGCAAATACTCACCGGATTGTGGGAACATTTGGCTATATGTCTCCGGAATATGCAGTAGCAGGGATATTCTCCGAAAAATCCGATGTATTTAGGTTCGTGGTGATGCTATTAGAGATTGCTAGCAGCAAGAAGAACACCAGTTTCAATTATCATGAACACGTAAACCTTCTTGGTTATGCATGGAAGTTGTGGAATGAAAACAGGGGATTAGATTTAATAGATCAACAAGCAATTGGTGACTCATATTCTAAATCTCAAGTTATGAAAAGTGTACAAGTGGGGCTGCTTTGTGTACAAGATCATGCAGCAGATAGGCCAACCGTGCCAGCTATAGTTATGATGCCAAGCAGTGAAACAGATCTACCTCAGCCTAAACAACCCACATTTACATTTCGATGCTTGTTGAATTCTGGTTTAAGATCCAAATACAACAACTTCCCTATAAACGAGGCAATTGTATCAACGATTGAAGGCCGATAA

Network for GWHGAAZE006567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	52	163	3.60E-29
PF00954.21	S_locus_glycop	195	303	5.90E-31
PF08276.12	PAN_2	339	397	3.90E-18
PF00954.21	S_locus_glycop	486	541	4.60E-16
PF08276.12	PAN_2	575	632	1.40E-14
PF07714.18	PK_Tyr_Ser-Thr	709	784	4.00E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.342
	SRR3591706	second leaf	1.325
	SRR3591707	mature leaf	6.744
	SRR3591708	Shoot apex	0.317
	SRR3591709	Stem	2.234
	SRR3591710	White floral bud	6.098
	SRR3591711	White flower	8.557
	SRR3591712	Green floral bud	1.180
	SRR3591713	Yellow flower	8.446
SRP173429	SRR8316895	Juvenile bud stage	0.636
	SRR8316896	Juvenile bud stage	0.868
	SRR8316897	Juvenile bud stage	0.045
	SRR8316894	Third green stage	0.483
	SRR8316900	Third green stage	0.448
	SRR8316901	Third green stage	0.753
	SRR8316898	Complete white stage	0.415
	SRR8316899	Complete white stage	1.633
	SRR8316903	Complete white stage	1.359
	SRR8316902	Silver flowering stage	2.642
	SRR8316904	Silver flowering stage	3.962
	SRR8316905	Silver flowering stage	2.194
	SRR8316906	Gold flowering stage	10.171
	SRR8316907	Gold flowering stage	6.025
	SRR8316908	Gold flowering stage	14.929
SRP132670	SRR6706286	Control	0.938
	SRR6706287	Light intensity 50%	0.980
	SRR6706288	Light intensity 20%	0.702
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.686
	CNS0095593	Slightly white alabastrum(diploid) 2	0.350
	CNS0095594	Slightly white alabastrum(diploid) 3	0.884
	CNS0095595	Whole white alabastrum(diploid) 2	0.724
	CNS0095596	Whole white alabastrum(diploid) 3	0.397
	CNS0095597	Whole white alabastrum(diploid) 4	0.631
	CNS0095598	Silvery flower (diploied) 1	2.106
	CNS0095599	Silvery flower (diploied) 2	2.182
	CNS0095600	Silvery flower (diploied) 3	4.562
	CNS0095601	Golden flower (diploid) 1	1.714
	CNS0095602	Golden flower (diploid) 2	5.425
	CNS0095603	Golden flower (diploid) 3	5.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.489
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.431
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.017
	CNS0095610	Silvery flower (diploied) 1	7.990
	CNS0095611	Silvery flower (diploied) 2	5.274
	CNS0095612	Silvery flower (diploied) 3	4.104
	CNS0095613	Golden flower (tetraploid) 1	4.845
	CNS0095614	Golden flower (tetraploid) 2	9.453
	CNS0095615	Golden flower (tetraploid) 3	6.774
CRA001975	CRR073297	Stem 1	0.315
	CRR073298	Stem 2	0.395
	CRR073299	Stem 3	0.336
	CRR073300	Leaf 1	0.175
	CRR073301	Leaf 2	0.189
	CRR073302	Leaf 3	0.058
	CRR073303	Juvenile bud 1	0.056
	CRR073304	Juvenile bud 2	0.106
	CRR073305	Juvenile bud 3	0.017
	CRR073306	Third green 1	0.101
	CRR073307	Third green 2	0.143
	CRR073308	Third green 3	0.286
	CRR073309	Second white 1	0.162
	CRR073310	Second white 2	0.684
	CRR073311	Second white 3	0.469
	CRR073312	Silver flowering 1	1.421
	CRR073313	Silver flowering 2	1.130
	CRR073314	Silver flowering 3	1.405
	CRR073315	Gold flowering 1	0.723
	CRR073316	Gold flowering 2	0.950
	CRR073317	Gold flowering 3	0.471
	CRR073318	Tawny withering 1	1.468
	CRR073319	Tawny withering 2	1.617
	CRR073320	Tawny withering 3	0.372