Gene detail

Detail information of GWHGAAZE007569

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN08386.1	1.16E-163	26S proteasome non-ATPase regulatory subunit 4 [Glycine soja]
Swissprot	tr\|P55034\|PSMD4_ARATH	7E-138	26S proteasome non-ATPase regulatory subunit 4 homolog
trEMBL	tr\|I1MN40\|I1MN40_SOYBN	1E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G23590.1}
TAIR10	AT4G38630.1	2E-100	regulatory particle non-ATPase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	47920157	47924245	+
GWHAAZE00000002	mRNA	47920157	47924245	+
GWHAAZE00000002	exon	47920157	47920270	+
GWHAAZE00000002	exon	47920468	47920573	+
GWHAAZE00000002	exon	47921207	47921321	+
GWHAAZE00000002	exon	47921410	47921619	+
GWHAAZE00000002	exon	47923087	47923393	+
GWHAAZE00000002	exon	47924201	47924245	+
GWHAAZE00000002	CDS	47920157	47920270	+
GWHAAZE00000002	CDS	47920468	47920573	+
GWHAAZE00000002	CDS	47921207	47921321	+
GWHAAZE00000002	CDS	47921410	47921619	+
GWHAAZE00000002	CDS	47923087	47923393	+
GWHAAZE00000002	CDS	47924201	47924245	+

Transcript Sequence
>GWHTAAZE007577 GCAACAATGATCTGTATCGACAACTCCGAATGGATGCGAAACGGAGACTACTCTCCCACTAGGTTTCAAGCTCAAACTGACGCTGTCAATCTCATCTGTGGAGCCAAAACTCAGTCTAATCCGGAGAATACTGTGGGAGTGTTGACAATGGCAGGCAAAGGAGTTCGTGTTTTGGTCACTCCTACCAGTGATCTTGGCAAGATTTTAGCTTGTATGCATGGTTTAGATATAGGAGGTGAGATGAACTTGGCAGCAGGAATTCAGGTTGCTCAGTTGGCTCTCAAGCATCGCCAAAACAAAAAGCAGCAGCAAAGGATTATTTTGTTTGCTGGAAGTCCTGTTAACTATGACAAGAAGGCATTGGAGCTGATTGGGAGAAAGTTAAAAAAGAACAGTGTAGCTCTTGATATCGTTTGCTTTGGCGAGGAGGATGAAGGGAAGACAGAAAAGCTTGAGGCTATGACCGCTGCCGTAAACAACAATGACAGTAGTCACATTGTTCATGTTGCTCCTGGCGCAAATGCTCTTTGTGATGTTCTTATAAGTACGCCTATCTTTACTGGGGATGGAGAGGGCGGAAGCGGTTTTGCAGCAGCGGCAGCTGCAGCTGGTGGAGTATCTGGTTATGATTTCGGAGTGGATCCCAATCTGGATCCTGAACTTGCTCTTGCTCTCCGAGTTTCAATGGAAGAAGAGCGGGCAAGGCAAGAAGCAGCTGCTAAAAAAGCTGAAGAGGAAGCTGGGAAGGAGGGTAAAGGAGGGGAACAACAATCCACTTCACAAGATGCAACTATGATGGAAAACATCGGTGCTGTGTCTTCTGAAGCAGAAAATAAAACAAATGATATCACGTTGAGGTGGTTTGTTGAAAATACTGGTGATTGGGTTTTTGGGTGA

Network for GWHGAAZE007569

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13519.7	VWA_2	2	111	3.40E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03029	PSMD4, RPN10	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.171
	SRR3591706	second leaf	31.062
	SRR3591707	mature leaf	16.802
	SRR3591708	Shoot apex	40.978
	SRR3591709	Stem	32.219
	SRR3591710	White floral bud	32.113
	SRR3591711	White flower	32.935
	SRR3591712	Green floral bud	31.211
	SRR3591713	Yellow flower	33.924
SRP173429	SRR8316895	Juvenile bud stage	31.896
	SRR8316896	Juvenile bud stage	39.024
	SRR8316897	Juvenile bud stage	22.671
	SRR8316894	Third green stage	22.266
	SRR8316900	Third green stage	43.650
	SRR8316901	Third green stage	41.170
	SRR8316898	Complete white stage	19.370
	SRR8316899	Complete white stage	46.310
	SRR8316903	Complete white stage	28.332
	SRR8316902	Silver flowering stage	14.928
	SRR8316904	Silver flowering stage	19.841
	SRR8316905	Silver flowering stage	10.066
	SRR8316906	Gold flowering stage	38.489
	SRR8316907	Gold flowering stage	31.537
	SRR8316908	Gold flowering stage	42.837
SRP132670	SRR6706286	Control	50.039
	SRR6706287	Light intensity 50%	51.951
	SRR6706288	Light intensity 20%	55.372
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.592
	CNS0095593	Slightly white alabastrum(diploid) 2	25.515
	CNS0095594	Slightly white alabastrum(diploid) 3	23.003
	CNS0095595	Whole white alabastrum(diploid) 2	20.128
	CNS0095596	Whole white alabastrum(diploid) 3	18.087
	CNS0095597	Whole white alabastrum(diploid) 4	16.328
	CNS0095598	Silvery flower (diploied) 1	19.726
	CNS0095599	Silvery flower (diploied) 2	20.720
	CNS0095600	Silvery flower (diploied) 3	24.652
	CNS0095601	Golden flower (diploid) 1	16.168
	CNS0095602	Golden flower (diploid) 2	23.433
	CNS0095603	Golden flower (diploid) 3	24.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.467
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.658
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.423
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.257
	CNS0095610	Silvery flower (diploied) 1	29.964
	CNS0095611	Silvery flower (diploied) 2	29.040
	CNS0095612	Silvery flower (diploied) 3	29.002
	CNS0095613	Golden flower (tetraploid) 1	15.160
	CNS0095614	Golden flower (tetraploid) 2	25.778
	CNS0095615	Golden flower (tetraploid) 3	16.938
CRA001975	CRR073297	Stem 1	49.084
	CRR073298	Stem 2	48.564
	CRR073299	Stem 3	45.005
	CRR073300	Leaf 1	52.777
	CRR073301	Leaf 2	45.168
	CRR073302	Leaf 3	46.205
	CRR073303	Juvenile bud 1	44.673
	CRR073304	Juvenile bud 2	44.632
	CRR073305	Juvenile bud 3	49.067
	CRR073306	Third green 1	19.212
	CRR073307	Third green 2	18.855
	CRR073308	Third green 3	16.744
	CRR073309	Second white 1	32.192
	CRR073310	Second white 2	27.211
	CRR073311	Second white 3	23.209
	CRR073312	Silver flowering 1	23.322
	CRR073313	Silver flowering 2	22.564
	CRR073314	Silver flowering 3	18.292
	CRR073315	Gold flowering 1	21.554
	CRR073316	Gold flowering 2	27.497
	CRR073317	Gold flowering 3	20.893
	CRR073318	Tawny withering 1	35.718
	CRR073319	Tawny withering 2	29.541
	CRR073320	Tawny withering 3	32.617