Gene detail

Detail information of GWHGAAZE008533

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008381581.1	PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A isoform X2 [Malus domestica]
Swissprot	tr\|Q9SIV2\|PSD2A_ARATH	26S proteasome non-ATPase regulatory subunit 2 homolog A
trEMBL	tr\|M5VGN0\|M5VGN0_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00127.1}
TAIR10	AT2G20580.1	26S proteasome regulatory subunit S2 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	80444489	80458019	+
GWHAAZE00000002	mRNA	80444489	80458019	+
GWHAAZE00000002	exon	80444489	80444497	+
GWHAAZE00000002	exon	80445333	80445430	+
GWHAAZE00000002	exon	80445623	80445743	+
GWHAAZE00000002	exon	80445828	80445887	+
GWHAAZE00000002	exon	80447587	80447654	+
GWHAAZE00000002	exon	80447735	80447777	+
GWHAAZE00000002	exon	80449519	80449557	+
GWHAAZE00000002	exon	80449650	80449732	+
GWHAAZE00000002	exon	80451155	80451284	+
GWHAAZE00000002	exon	80451401	80451475	+
GWHAAZE00000002	exon	80451568	80451729	+
GWHAAZE00000002	exon	80452411	80452518	+
GWHAAZE00000002	exon	80452712	80452801	+
GWHAAZE00000002	exon	80453249	80453389	+
GWHAAZE00000002	exon	80453487	80453600	+
GWHAAZE00000002	exon	80454067	80454291	+
GWHAAZE00000002	exon	80454398	80454511	+
GWHAAZE00000002	exon	80454837	80455052	+
GWHAAZE00000002	exon	80455705	80455764	+
GWHAAZE00000002	exon	80455845	80455958	+
GWHAAZE00000002	exon	80456401	80456486	+
GWHAAZE00000002	exon	80456737	80456845	+
GWHAAZE00000002	exon	80456953	80457131	+
GWHAAZE00000002	exon	80457725	80458019	+
GWHAAZE00000002	CDS	80444489	80444497	+
GWHAAZE00000002	CDS	80445333	80445430	+
GWHAAZE00000002	CDS	80445623	80445743	+
GWHAAZE00000002	CDS	80445828	80445887	+
GWHAAZE00000002	CDS	80447587	80447654	+
GWHAAZE00000002	CDS	80447735	80447777	+
GWHAAZE00000002	CDS	80449519	80449557	+
GWHAAZE00000002	CDS	80449650	80449732	+
GWHAAZE00000002	CDS	80451155	80451284	+
GWHAAZE00000002	CDS	80451401	80451475	+
GWHAAZE00000002	CDS	80451568	80451729	+
GWHAAZE00000002	CDS	80452411	80452518	+
GWHAAZE00000002	CDS	80452712	80452801	+
GWHAAZE00000002	CDS	80453249	80453389	+
GWHAAZE00000002	CDS	80453487	80453600	+
GWHAAZE00000002	CDS	80454067	80454291	+
GWHAAZE00000002	CDS	80454398	80454511	+
GWHAAZE00000002	CDS	80454837	80455052	+
GWHAAZE00000002	CDS	80455705	80455764	+
GWHAAZE00000002	CDS	80455845	80455958	+
GWHAAZE00000002	CDS	80456401	80456486	+
GWHAAZE00000002	CDS	80456737	80456845	+
GWHAAZE00000002	CDS	80456953	80457131	+
GWHAAZE00000002	CDS	80457725	80457800	+
GWHAAZE00000002	three_prime_UTR	80457801	80458019	+

Transcript Sequence
>GWHTAAZE008541 ATGGGTATGTGGGAGAAGTTGGGATTGGAGGAGCAAGTGGAGTTGTACATAAATGTTCTTCAGGATTCTCAACCAGAATTGCAAAGGACTGCTCTCGAGAGTATAATGCGAGTAATTCAGACCGCAATAACCTCTATGACTTCCATTCCAAAGCCATTGAAGTTCTTGCGCCCTCATTATGCAACTCTAAAGGCATACTATGAGACGATGACGGACCTCGATTTAAAGAAATTACTTGCAGATATACTTTCAGTTTTGGCTTTCACCTTGTCTGCAGAAGGAGAACGGGATAGTTTGAAGTATAGGTTATTGGGTTCTACGGTTGATATTCGTTCATGGGGTCAAGCGTATGTCAGGAACCTTTGTATAGAAATCACTGAAGAATGTGTAGAGCCACAGGAGAATGCTGAACATGAGGCGGTCGATCTTTTGATTGAAGTTGGAAACCTCAATATGTTATTGGAGCATGTTGACTCTACAAATTACGAAAAGACATGCTTATACCTCACCAGTTTGGCAAGATGCCTTCCTGAATTAGATCGTATAAAAGTTATTGAGGTCGCACTTGCAATCTATACAGAATTTAGAGAGTTTACTAGGGCACTTCAGATGTCACTGTTCCTTGACAGCCTGAAGGATCGCATTCTCCAATCTGTGGGCAACCTTTTTCTTAAATGTGATGATCGTTCACAGCGGATGCAATTTTGTAGCATCCTTGCTCGACATGGCTTAGATTTTGAAGTTGTTACTGGTGAACATTGTAACAATGATGATGAAAGAGATTTGTTGCAGACGATTGTTAACAACTATAAACTGAGTGATGGCTATCTTACCCTTGCTCGTGTTATGGAGGTCACAGAGGCCAAGACTCCCGCTGATGTTTATGAGTCGCATTTGCTTGATGACCGTGGTAGAGCTTCTGCAAGCATGGATACAGAGCTTTTAAACTTGGCAGCAACATTTATTAATGCATTTGTAAACGCTGGATTTCAGGAGGATGGTTTAGGGTTGATCAATGATTCTGATTTAGAAAAATGGATTCATAAGAACAACGAAAATGGATGGATCAGTGTTATGGCGAGTCTGGGTATGATTTACCTCTGGAGATTTCCAAAGACTGTGTCAATTCTCGAATATGTGTACGGAGATTATGATGACTACACCGTTGCAGGAGCAATATTAGCAGTTGCGATTGTGAAGTGTGGTATCAAGTTTCTAAATGATCCTGGTTTGGAAATTAAAAAGATTTGGGGATTTGTACATGCGGAAGTGGAGATATCTAGTAAACCCCCTGCAATAATGGGAATGGGCATGTATTATGCAGGCACTTGCAATCAAGAGATCAGAGAAAAATTGACTAGAATCCTTCAAGATGAAAACTCACCCCTTGATGTGATTGTATTCGCGGCAATCTCCTTGGGGTTGGTATTCGTGGGTACCTGTGATTCACCTGTGTCCAAAGAACTAGTACGCGTATGCAAGCAAAGACTAGCATATCCTATGTGGCAGGATCCACTAACACGTCTTTTGCCTCTCAGCCTTGGTCTCGTTTACCTTGGGAAGCAGAGAAGTGTGGTTTCATATGACCGTGTTTCCAGCAGCTTTGATGTAAAGATTAGAAAATATTGCGATATGACGCTGGATTCTTGTGCCTATGCTGGATCAGGGAATGTATTAAAGGTTCAAGACTTTATGGGCCAGTGTAACAGAGAAAATGAGGAGGATGGAGATTACATGGGACCAGCTGTTGTTGGAATTGCTATGCTGGCAATGGATGAAAACGTGGGCCTTGAAATGTCTATGCGCTTGTTACACAATCTTTTACGGTATGGAGGGCCAAATATCAGAAGGGCAGTTCCTTTGGCTATTTCTCTCCTGTATATATCAGACCCAAAGGTCCATGTAATAGACACATTGACTAAACTTAGTCGTGATGAAGATCTCGAAGTAGTAATGGCTGCTATCATCTCTTTAGGGCTGATAGGTGCAGGAACTAACCATGCTAGAATTGCTGGAGTTCTCCGGAATCTTTCTAGTTTTTACTGCAGAAATGAAGTTCTTATCTTCTGTGTCCGAATAGCTCAAGGTCTTCTTTATATGGGAAAGGGGTTGCTGACTCTTTCTCCTTACCATTCTGACCGGTTCTTACTGTGCCGGACGGCACTGGCTGGACTTATTACTTTTCTCCACACGTGTCTGAATATGAGAGCCACCATTTTAGGGACACATAATTATCTCATCTACTACCTAGTTTTGGCAATGCAGCCAAGAATGCTGATGACTGTGGACGAAAGTATGACACCTCTCTCGGTTCCGGTTCGGGTGGGCCGAGCGGTTGATGTTGCTGGAGAGCCAGGTCGAAGGAGGACCATCACGGGTTTCCAAACTCATTCAACTCCCGTTCTCTTAGGTGCGGGAGAAAGAGCTGAACTTGCTACAAACGAGTATGAATCTCTATCGCCTTTTCTTGAAGGCTTTGTGATCTTGAGGAGGAATTCCAGTCACACAGGAGATATCTAGTTAGATGCTCTTATAGAGGACCTGATTTTGATAGACCTGAACCAGTTTTGATTCACTTAATTCTTGAATCAGCCGATTCTAATTTTTTTAGGGAAGAAGGATTATAATTGCAAAAAATGAATTCCAAAAACTTGTGCATAAGAGAAACGGTTACAATTGTACATATATGTGATTGTTATTCTTAGTGTCAATATGAATAATCATTCTTGTTGTCCCAAA

Network for GWHGAAZE008533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17781.2	RPN1_RPN2_N	14	128	2.50E-40
PF17781.2	RPN1_RPN2_N	133	299	1.60E-37
PF18051.2	RPN1_C	783	833	2.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03028	PSMD2, RPN1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0042176	biological_process	regulation of protein catabolic process
GO:0000502	cellular_component	proteasome complex
GO:0030234	molecular_function	enzyme regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.335
	SRR3591706	second leaf	13.014
	SRR3591707	mature leaf	15.010
	SRR3591708	Shoot apex	26.832
	SRR3591709	Stem	20.338
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.033
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	20.732
	SRR8316896	Juvenile bud stage	27.483
	SRR8316897	Juvenile bud stage	10.298
	SRR8316894	Third green stage	9.885
	SRR8316900	Third green stage	15.957
	SRR8316901	Third green stage	19.606
	SRR8316898	Complete white stage	4.185
	SRR8316899	Complete white stage	21.030
	SRR8316903	Complete white stage	11.140
	SRR8316902	Silver flowering stage	4.716
	SRR8316904	Silver flowering stage	7.752
	SRR8316905	Silver flowering stage	3.296
	SRR8316906	Gold flowering stage	7.833
	SRR8316907	Gold flowering stage	7.834
	SRR8316908	Gold flowering stage	8.718
SRP132670	SRR6706286	Control	11.934
	SRR6706287	Light intensity 50%	13.592
	SRR6706288	Light intensity 20%	14.683
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.467
	CNS0095593	Slightly white alabastrum(diploid) 2	12.820
	CNS0095594	Slightly white alabastrum(diploid) 3	11.714
	CNS0095595	Whole white alabastrum(diploid) 2	10.461
	CNS0095596	Whole white alabastrum(diploid) 3	6.932
	CNS0095597	Whole white alabastrum(diploid) 4	9.665
	CNS0095598	Silvery flower (diploied) 1	21.764
	CNS0095599	Silvery flower (diploied) 2	19.277
	CNS0095600	Silvery flower (diploied) 3	6.642
	CNS0095601	Golden flower (diploid) 1	16.526
	CNS0095602	Golden flower (diploid) 2	7.107
	CNS0095603	Golden flower (diploid) 3	8.246
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.390
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.029
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.729
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.882
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.325
	CNS0095610	Silvery flower (diploied) 1	12.534
	CNS0095611	Silvery flower (diploied) 2	9.763
	CNS0095612	Silvery flower (diploied) 3	6.685
	CNS0095613	Golden flower (tetraploid) 1	4.574
	CNS0095614	Golden flower (tetraploid) 2	7.768
	CNS0095615	Golden flower (tetraploid) 3	4.440
CRA001975	CRR073297	Stem 1	15.913
	CRR073298	Stem 2	13.321
	CRR073299	Stem 3	1.653
	CRR073300	Leaf 1	13.743
	CRR073301	Leaf 2	13.459
	CRR073302	Leaf 3	1.249
	CRR073303	Juvenile bud 1	1.834
	CRR073304	Juvenile bud 2	0.241
	CRR073305	Juvenile bud 3	1.640
	CRR073306	Third green 1	0.308
	CRR073307	Third green 2	0.211
	CRR073308	Third green 3	0.172
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.104
	CRR073311	Second white 3	0.199
	CRR073312	Silver flowering 1	0.072
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.123
	CRR073315	Gold flowering 1	1.056
	CRR073316	Gold flowering 2	2.758
	CRR073317	Gold flowering 3	0.472
	CRR073318	Tawny withering 1	4.665
	CRR073319	Tawny withering 2	8.937
	CRR073320	Tawny withering 3	4.742