Detail information of GWHGAAZE009136


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787725.11.69039E-27PREDICTED: proteasome subunit beta type-4-like [Nicotiana sylvestris]
Swissprottr|Q7DLR9|PSB4_ARATH3E-26Proteasome subunit beta type-4 (Precursor)
trEMBLtr|F2VPR6|F2VPR6_SOLNI7E-28Proteasome subunit beta type-4 {ECO:0000313|EMBL:ADW66147.1} (Fragment)
TAIR10AT1G56450.12E-2120S proteasome beta subunit G1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene103389459103398787+
GWHAAZE00000002mRNA103389459103398787+
GWHAAZE00000002exon103389459103389644+
GWHAAZE00000002exon103389779103389938+
GWHAAZE00000002exon103390023103390154+
GWHAAZE00000002exon103396019103396072+
GWHAAZE00000002exon103398674103398787+
GWHAAZE00000002five_prime_UTR103389459103389644+
GWHAAZE00000002five_prime_UTR103389779103389938+
GWHAAZE00000002five_prime_UTR103390023103390154+
GWHAAZE00000002five_prime_UTR103396019103396024+
GWHAAZE00000002CDS103396025103396072+
GWHAAZE00000002CDS103398674103398787+
Transcript Sequence

Network for GWHGAAZE009136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02736PSMB4 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.302
SRR3591706second leaf0.184
SRR3591707mature leaf0.110
SRR3591708Shoot apex0.047
SRR3591709Stem0.538
SRR3591710White floral bud0.280
SRR3591711White flower1.267
SRR3591712Green floral bud0.536
SRR3591713Yellow flower1.382
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.014
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.098
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.059
CNS0095599Silvery flower (diploied) 20.004
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.072
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.056
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.040
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 10.137
CNS0095611Silvery flower (diploied) 20.096
CNS0095612Silvery flower (diploied) 30.000
CNS0095613Golden flower (tetraploid) 10.043
CNS0095614Golden flower (tetraploid) 20.093
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.086
CRR073298Stem 20.031
CRR073299Stem 30.490
CRR073300Leaf 10.081
CRR073301Leaf 20.007
CRR073302Leaf 30.164
CRR073303Juvenile bud 10.043
CRR073304Juvenile bud 20.065
CRR073305Juvenile bud 30.035
CRR073306Third green 10.122
CRR073307Third green 20.060
CRR073308Third green 30.005
CRR073309Second white 10.187
CRR073310Second white 20.123
CRR073311Second white 30.093
CRR073312Silver flowering 10.079
CRR073313Silver flowering 20.075
CRR073314Silver flowering 30.094
CRR073315Gold flowering 10.699
CRR073316Gold flowering 20.717
CRR073317Gold flowering 30.197
CRR073318Tawny withering 10.063
CRR073319Tawny withering 20.138
CRR073320Tawny withering 30.023