Detail information of GWHGAAZE009614


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011080157.10PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Sesamum indicum]
Swissprottr|Q9SZD4|PRS4A_ARATH026S proteasome regulatory subunit 4 homolog A
trEMBLtr|A0A068U5S4|A0A068U5S4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03836.1}
TAIR10AT4G29040.10regulatory particle AAA-ATPase 2A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene113643979113647898+
GWHAAZE00000002mRNA113643979113647898+
GWHAAZE00000002exon113643979113644455+
GWHAAZE00000002exon113645479113645724+
GWHAAZE00000002exon113646938113646982+
GWHAAZE00000002exon113647117113647286+
GWHAAZE00000002exon113647367113647583+
GWHAAZE00000002exon113647674113647898+
GWHAAZE00000002CDS113643979113644455+
GWHAAZE00000002CDS113645479113645724+
GWHAAZE00000002CDS113646938113646982+
GWHAAZE00000002CDS113647117113647286+
GWHAAZE00000002CDS113647367113647583+
GWHAAZE00000002CDS113647674113647898+
Transcript Sequence

Network for GWHGAAZE009614

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0060map03050 Proteasome
GO:0030163 protein catabolic process GOslim:biological_process
GO:0005737 cytoplasm GOslim:cellular_component
GO:0016787 hydrolase activity GOslim:molecular_function
GO:0005839 proteasome core complex GOslim:cellular_component
GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process
GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function
GO:0005524 ATP binding GOslim:molecular_function
GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component
GO:0004175 endopeptidase activity GOslim:molecular_function
GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16450.6Prot_ATP_ID_OB1131664.40E-10
PF00004.30AAA2263741.50E-33
PF17862.2AAA_lid_33964391.80E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03062PSMC1, RPT2 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163biological_processprotein catabolic process
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf151.202
SRR3591706second leaf65.164
SRR3591707mature leaf49.172
SRR3591708Shoot apex133.945
SRR3591709Stem126.136
SRR3591710White floral bud142.473
SRR3591711White flower212.698
SRR3591712Green floral bud128.715
SRR3591713Yellow flower152.486
SRP173429 SRR8316895Juvenile bud stage 112.432
SRR8316896Juvenile bud stage 164.619
SRR8316897Juvenile bud stage 78.255
SRR8316894Third green stage 71.294
SRR8316900Third green stage 189.814
SRR8316901Third green stage 174.519
SRR8316898Complete white stage 87.761
SRR8316899Complete white stage 226.596
SRR8316903Complete white stage 127.846
SRR8316902Silver flowering stage95.190
SRR8316904Silver flowering stage110.230
SRR8316905Silver flowering stage58.398
SRR8316906Gold flowering stage 224.960
SRR8316907Gold flowering stage 221.252
SRR8316908Gold flowering stage 246.526
SRP132670SRR6706286Control166.727
SRR6706287Light intensity 50%167.272
SRR6706288Light intensity 20%181.014
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1114.973
CNS0095593Slightly white alabastrum(diploid) 2115.220
CNS0095594Slightly white alabastrum(diploid) 3110.729
CNS0095595Whole white alabastrum(diploid) 2105.342
CNS0095596Whole white alabastrum(diploid) 3101.353
CNS0095597Whole white alabastrum(diploid) 490.019
CNS0095598Silvery flower (diploied) 1108.211
CNS0095599Silvery flower (diploied) 2104.664
CNS0095600Silvery flower (diploied) 3186.853
CNS0095601Golden flower (diploid) 196.006
CNS0095602Golden flower (diploid) 2160.655
CNS0095603Golden flower (diploid) 3150.756
CNS0095604Slightly white alabastrum(tetraploid) 1129.258
CNS0095605Slightly white alabastrum(tetraploid) 2102.666
CNS0095606Slightly white alabastrum(tetraploid) 3173.308
CNS0095607Whole white alabastrum(tetraploid) 187.527
CNS0095608Whole white alabastrum(tetraploid) 272.131
CNS0095609Whole white alabastrum(tetraploid) 3132.705
CNS0095610Silvery flower (diploied) 1183.400
CNS0095611Silvery flower (diploied) 2178.267
CNS0095612Silvery flower (diploied) 3163.155
CNS0095613Golden flower (tetraploid) 1135.457
CNS0095614Golden flower (tetraploid) 2160.773
CNS0095615Golden flower (tetraploid) 3170.479
CRA001975CRR073297Stem 1182.364
CRR073298Stem 2171.397
CRR073299Stem 3206.785
CRR073300Leaf 1187.093
CRR073301Leaf 2176.559
CRR073302Leaf 3216.173
CRR073303Juvenile bud 1218.339
CRR073304Juvenile bud 2206.590
CRR073305Juvenile bud 3202.121
CRR073306Third green 1143.915
CRR073307Third green 2133.892
CRR073308Third green 3142.318
CRR073309Second white 1185.216
CRR073310Second white 2193.032
CRR073311Second white 3155.800
CRR073312Silver flowering 1120.523
CRR073313Silver flowering 2115.461
CRR073314Silver flowering 391.382
CRR073315Gold flowering 1118.948
CRR073316Gold flowering 2139.770
CRR073317Gold flowering 3125.242
CRR073318Tawny withering 1180.375
CRR073319Tawny withering 2152.926
CRR073320Tawny withering 3194.621