Gene detail

Detail information of GWHGAAZE010183

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABA96140.2	0	Ribulose bisphosphate carboxylase large chain precursor, putative [Oryza sativa Japonica Group]
Swissprot	tr\|O63094\|RBL_CAJCA	5E-177	Ribulose bisphosphate carboxylase large chain {ECO:0000255\|HAMAP-Rule:MF_01338} (Precursor)
trEMBL	tr\|Q2QW49\|Q2QW49_ORYSJ	0	Ribulose bisphosphate carboxylase large chain, putative {ECO:0000313\|EMBL:ABA96140.2}
TAIR10	ATCG00490.1	2E-127	ribulose-bisphosphate carboxylases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123919124	123920551	-
GWHAAZE00000002	mRNA	123919124	123920551	-
GWHAAZE00000002	exon	123919819	123920551	-
GWHAAZE00000002	exon	123919630	123919736	-
GWHAAZE00000002	exon	123919320	123919453	-
GWHAAZE00000002	exon	123919124	123919211	-
GWHAAZE00000002	CDS	123919819	123920551	-
GWHAAZE00000002	CDS	123919630	123919736	-
GWHAAZE00000002	CDS	123919320	123919453	-
GWHAAZE00000002	CDS	123919124	123919211	-

Transcript Sequence
>GWHTAAZE010195 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCGGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCCGGAGTTCCGCCTGAAGAAGCGGGGGCCGCGGTAGCTGCTGAATCTTCAACCGGTACATGGACAACTGTGTGGACCGATGGACTTACCAGCCTTGATCGTTACAAAGGGCGATGCTACCACATCGAGCCCGTTGCTGGAGAAGAAAATCAATTTATTGCTTATGTAGCTTACCCATTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCTATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTGGAAGATCTGCGAATCCCTGTCTCTTATGTTAAAACTTTCCAAGGCCCGCCTCATGGTATCCAAGTTGAGAGAGATAAATTGAACAAGTACGGCCGCCCCCTGTTGGGATGTACTATTAAACCTAAATTGGGGTTATCTGCTAAAAACTACGGTAGGGCGGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAAAGATGATGAGAACGTGAACTCCCAACCATTTATGCGTTGGAGAGATCGTTTCTTATTTTGTGCCGAAGCCCTTTTTAAAGCACAAGTTGAAACAGGTGAAATCAAAGGGCATTACTTGAATGCTACTGCAGGGGATTCACTGCAAATACCAGCCTGGCTCACTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCATGCAGTTATTGATAGACAGAAGAATCATGGATTGGGTCTCTCTACCGGGTGTTCTGCCCGTGGCTTCGGGGGGTATTCACGTTTGGCATATGCCCGCTTTGACCGAGATCTTTGGAGATGATTCCGTCCTACAGTTCGGCGGAGGAACTTTAGGACACCCTTGGGCTAGCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAGATCAAATTTGAATTTCAAGCAATGGATACTTTGTAA

Network for GWHGAAZE010183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02788.17	RuBisCO_large_N	24	144	9.40E-46
PF00016.21	RuBisCO_large	154	250	3.10E-41
PF00016.21	RuBisCO_large	281	327	6.40E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01601	rbcL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0015977	biological_process	carbon fixation
GO:0016984	molecular_function	ribulose-bisphosphate carboxylase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.436
	SRR3591706	second leaf	11.534
	SRR3591707	mature leaf	7.199
	SRR3591708	Shoot apex	9.713
	SRR3591709	Stem	2.004
	SRR3591710	White floral bud	0.725
	SRR3591711	White flower	0.930
	SRR3591712	Green floral bud	1.422
	SRR3591713	Yellow flower	1.666
SRP173429	SRR8316895	Juvenile bud stage	92.890
	SRR8316896	Juvenile bud stage	29.340
	SRR8316897	Juvenile bud stage	147.405
	SRR8316894	Third green stage	140.743
	SRR8316900	Third green stage	10.497
	SRR8316901	Third green stage	7.861
	SRR8316898	Complete white stage	66.658
	SRR8316899	Complete white stage	2.385
	SRR8316903	Complete white stage	42.889
	SRR8316902	Silver flowering stage	69.218
	SRR8316904	Silver flowering stage	58.309
	SRR8316905	Silver flowering stage	69.823
	SRR8316906	Gold flowering stage	2.566
	SRR8316907	Gold flowering stage	1.883
	SRR8316908	Gold flowering stage	2.752
SRP132670	SRR6706286	Control	4.415
	SRR6706287	Light intensity 50%	6.988
	SRR6706288	Light intensity 20%	5.671
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.695
	CNS0095593	Slightly white alabastrum(diploid) 2	26.373
	CNS0095594	Slightly white alabastrum(diploid) 3	40.551
	CNS0095595	Whole white alabastrum(diploid) 2	54.607
	CNS0095596	Whole white alabastrum(diploid) 3	41.604
	CNS0095597	Whole white alabastrum(diploid) 4	43.276
	CNS0095598	Silvery flower (diploied) 1	33.308
	CNS0095599	Silvery flower (diploied) 2	35.707
	CNS0095600	Silvery flower (diploied) 3	13.635
	CNS0095601	Golden flower (diploid) 1	32.652
	CNS0095602	Golden flower (diploid) 2	6.970
	CNS0095603	Golden flower (diploid) 3	12.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.554
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.093
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.650
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.883
	CNS0095610	Silvery flower (diploied) 1	8.702
	CNS0095611	Silvery flower (diploied) 2	13.125
	CNS0095612	Silvery flower (diploied) 3	10.570
	CNS0095613	Golden flower (tetraploid) 1	26.098
	CNS0095614	Golden flower (tetraploid) 2	12.439
	CNS0095615	Golden flower (tetraploid) 3	8.406
CRA001975	CRR073297	Stem 1	45.448
	CRR073298	Stem 2	43.137
	CRR073299	Stem 3	18.917
	CRR073300	Leaf 1	15.680
	CRR073301	Leaf 2	18.025
	CRR073302	Leaf 3	23.256
	CRR073303	Juvenile bud 1	43.551
	CRR073304	Juvenile bud 2	36.380
	CRR073305	Juvenile bud 3	61.785
	CRR073306	Third green 1	55.291
	CRR073307	Third green 2	27.239
	CRR073308	Third green 3	64.387
	CRR073309	Second white 1	25.678
	CRR073310	Second white 2	86.774
	CRR073311	Second white 3	111.782
	CRR073312	Silver flowering 1	93.408
	CRR073313	Silver flowering 2	22.221
	CRR073314	Silver flowering 3	50.601
	CRR073315	Gold flowering 1	198.447
	CRR073316	Gold flowering 2	186.103
	CRR073317	Gold flowering 3	238.646
	CRR073318	Tawny withering 1	19.697
	CRR073319	Tawny withering 2	17.568
	CRR073320	Tawny withering 3	14.694