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Detail information of GWHGAAZE011091
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002270542.1
0
PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 homolog A [Vitis vinifera]
Swissprot
tr|O48844|PSD1A_ARATH
0
26S proteasome non-ATPase regulatory subunit 1 homolog A
trEMBL
tr|D7TEW7|D7TEW7_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CBI29040.3}
TAIR10
AT2G32730.1
0
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000003
gene
42171964
42182516
+
GWHAAZE00000003
mRNA
42171964
42182516
+
GWHAAZE00000003
exon
42171964
42172145
+
GWHAAZE00000003
exon
42174796
42174859
+
GWHAAZE00000003
exon
42175722
42175827
+
GWHAAZE00000003
exon
42176337
42176451
+
GWHAAZE00000003
exon
42176526
42176694
+
GWHAAZE00000003
exon
42177049
42177536
+
GWHAAZE00000003
exon
42177639
42177774
+
GWHAAZE00000003
exon
42178279
42178527
+
GWHAAZE00000003
exon
42178610
42178830
+
GWHAAZE00000003
exon
42178925
42179183
+
GWHAAZE00000003
exon
42180074
42180306
+
GWHAAZE00000003
exon
42180784
42181309
+
GWHAAZE00000003
exon
42182184
42182516
+
GWHAAZE00000003
CDS
42171964
42172145
+
GWHAAZE00000003
CDS
42174796
42174859
+
GWHAAZE00000003
CDS
42175722
42175827
+
GWHAAZE00000003
CDS
42176337
42176451
+
GWHAAZE00000003
CDS
42176526
42176694
+
GWHAAZE00000003
CDS
42177049
42177536
+
GWHAAZE00000003
CDS
42177639
42177774
+
GWHAAZE00000003
CDS
42178279
42178527
+
GWHAAZE00000003
CDS
42178610
42178830
+
GWHAAZE00000003
CDS
42178925
42179183
+
GWHAAZE00000003
CDS
42180074
42180306
+
GWHAAZE00000003
CDS
42180784
42181309
+
GWHAAZE00000003
CDS
42182184
42182516
+
Transcript Sequence
>GWHTAAZE011103 ATGGCGGCGACTATGGTGAGCTCAGCCGGAGGGCTTTTGGCTATGCTCAACGAGCCTCATCCATCGCTAAAACTCCACGCTCTTACCAATCTAAACGCCTTTGTTGATTACTTCTGGCCGGAGATCTCCACTAGTGTCCCCATTATGTATGCAATTTCTCTCTATCTACGCTCTATCCATGTAGAGAGCTTGTATGAGGACGAAGAGTTTGACCAGAGACAATTGGCGGCATTACTTGTGTCAAAGGTGTTCTACTACTTGGGCGAACTTAATGATTCTTTGTCATATGCTCTAGGAGCTGGTCCTTTGTTTGATGTTTCAGAAGATTCAGATTATGTTCATACTCTTCTCGCCAAAGCTATAGATGAGTATGCCAGTCTTAGGACTAAGGCAGCGGAGTCTAATGATGAAGCAGCAGCCAATATTGATCCTAGGTTGGAGGCAATTGTCGAGAGGATGCTTGACAAGTGTATCTTGGATGGAAGATATCAGCAAGCAATTGGAATGGCAATTGAATGCCGAAGATTGGATAAGCTTGAGGAAGGAATTACAAAGAGTGATAATGTTCATGCAACTCTATCGTACTGCCTTAACGTCTCTCATGCTTTTGTTAACCGTAGAGAATATCGACGGGAGGTGCTTCAACTTCTCGTTAAAGTATTTCAGAAGCTGCCTTCGCCCGATTATTTGAGTATTTGTCAGTGCCTCATGTTTTTGGATGAACCAGAGGGTGTTGCAAACATATTGGAAAAGCTTCTACGTTCAGAAAATAAAGATGATGCTTTGCTAGCTCTACAAATAGCTTTTGATCTCATAGAGAACGAGCACCAAGCTTTTCTTTTGAACGTTAGAGATCGGCTCTCCAAACCCAAATCTCAACCTACAGAATCTGAACGGCTAGGATCTGCCGAGCCAGATTCTGCTCAAACTCAAAATGCTAATGCCACTCCATCAGAGGATGTTCAAATGACAGATGGCCCTACTCAAGCCGTTGATGTGAATATTGTTCCTGAAGTCGATCCAAAGGAAGTAACATATGCTGAGAGGTTGACAAAACTCAAAGGAATTTTGTCTGGGGAGACTTCAATCCAGTTAACTCTACAATTCTTATATAGTCATAACAAGTCGGATCTTCTTATTCTGAAGACCATAAAGCAGTCGGTTGAGATGAGAAACAGTGTTTGCCACAGTGCAACAATATATGCCAATGCAATCATGCATGCTGGAACAACTGTGGATACATTTCTAAGGGAGAATCTGGACTGGCTAAGCAGGGCCACAAATTGGGCCAAGTTTAGTGCAACAGCTGGGCTAGGTGTTATCCACAGAGGCCACTTGCAGCAAGGAAGATCACTAATGGCCCCTTATTTGCCTCAAAGCGGTGCTGGTGGTGGGGGCAGCCCATACTCAGAAGGTGGTGCTCTCTATGCCTTGGGTCTTATTCATGCAAACCACGGGGAGGGCATCAAACAATTTCTTCGTGATAGCCTACGAAGTACCAATGTTGAGGTTATTCAACATGGTGCATGCTTAGGTCTTGGTTTGGCTGCTCTGGGAACAGCTGATGAAGATATATATGATGACATAAAAACTGTTCTTTATACGGACAGTGCTGTTGCCGGTGAAGCTGCTGGTATTAGTATGGGTTTATTAATGGTTGGTACTGCAAGTGAGAAGGCAGGGGAAATGCTTACATATGCACATGAAACACAACACGAGAAGATTATTAGGGGACTGGCGTTGGGGATAGCCCTTACTGTCTATGGAAGAGAAGAAGAAGCCGATACATTGATTGAGCAGATGACTAGGGATCAAGACCCCATACTACGATATGGTGGTATGTATGCGTTGGCATTGGCATACAGTGGAACAGCAAACAACAAGGCCATCCGTCAGTTGCTACACTTCGCTGTTTCTGATGTCAGTGATGATGTCAGGAGGACTGCTGTTCTGGCCCTTGGTTTTGTCTTGTACTCTGAACCAGAACAGACCCCTCGAATTGTCTCCCTGCTCTCTGAGTCGTACAACCCACATGTTCGCTATGGAGCAGCTTTGGCAGTAGGCATTTCCTGTGCAGGTACTGGTCTTAGTGAGGCCATATCTTTGCTAGAACCTTTGACCTCAGATGTTGTTGACTTTGTACGACAAGGTGCTCTCATTGCAATGGCTATGGTCATGGTCCAGATCAGCGAAGCCAGTGATTCTCGTGTTGGATCGTTCAGGCGACAACTGGAGAAAATAATTCAAGATAAGCATGAAGACACAATGAGCAAGATGGGGGCAATTTTAGCCTCTGGAATCCTCGATGCCGGGGGAAGGAATGTCACAATTAAGTTGCTATCGAAGACAAAACATGACAAGATAACTGCAGTCGTTGGCCTTGCGGTATTCAGCCAATTTTGGTACTGGTACCCCCTCATATATTTCATTAGCTTGGCGTTCTCGCCCACTGCTTTCATAGGACTCAATTATGATTTAAAAGTACCAAAGTTTGAGTTCTTGTCACATGCAAAACCGTCTTTGTTTGAGTACCCTCGTCCTACTACCGTGCCCACCACCACATCAGCTGTGAAACTCCCTACTGCGGTTTTATCAACGTCGGCCAAAGCTAAGGCTAGGGCTAGTAAGAAAGAGGCGGATCAAAAGGCCGTTGCTGAAAAGTCTACTTCTGGGTCAGATGAACCTGCTGGGTCAAGTTCTGCGAAAGGGAAGTCGTCTAGTGACAAGGATGCTGCGGATTCTATGCAGGTTGATACTCCCACGGAGAAGAAGGCAGAACCTGAGCCCACTTTCGAGATTTTGACCAACCCTGCCCGGGTGGTCCCCGCCCAAGAGAAATTCATCAAGTTTTTGGAAGAAAGCAGGTACGTGCCTGTGAAATCAGCAGCTTCGGGCTTCGTGCTCTTAAGGGACTTGCGTCCTACAGAACCGGAGGTTTTGTCTCTCACGGATGCACCTTCATCAACTGCATCAACCGCTGCAGCACCTGCAGCTGCACATCAGGGCGGCTCATCGTCGGGCGCCACGATGAACGTAGACGAGGAACCTCAGCCACCGCAGCCCTTTGAATACAGCAATTGA
Network for GWHGAAZE011091
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF01851.23
PC_rep
508
541
5.40E-06
PF13646.7
HEAT_2
631
723
9.90E-13
PF18004.2
RPN2_C
817
979
2.20E-48
Protein Sequence
>GWHPAAZE011097 MAATMVSSAGGLLAMLNEPHPSLKLHALTNLNAFVDYFWPEISTSVPIMYAISLYLRSIHVESLYEDEEFDQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLRTKAAESNDEAAANIDPRLEAIVERMLDKCILDGRYQQAIGMAIECRRLDKLEEGITKSDNVHATLSYCLNVSHAFVNRREYRREVLQLLVKVFQKLPSPDYLSICQCLMFLDEPEGVANILEKLLRSENKDDALLALQIAFDLIENEHQAFLLNVRDRLSKPKSQPTESERLGSAEPDSAQTQNANATPSEDVQMTDGPTQAVDVNIVPEVDPKEVTYAERLTKLKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQSGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKTVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDSRVGSFRRQLEKIIQDKHEDTMSKMGAILASGILDAGGRNVTIKLLSKTKHDKITAVVGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFLSHAKPSLFEYPRPTTVPTTTSAVKLPTAVLSTSAKAKARASKKEADQKAVAEKSTSGSDEPAGSSSAKGKSSSDKDAADSMQVDTPTEKKAEPEPTFEILTNPARVVPAQEKFIKFLEESRYVPVKSAASGFVLLRDLRPTEPEVLSLTDAPSSTASTAAAPAAAHQGGSSSGATMNVDEEPQPPQPFEYSN
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K03032
PSMD1, RPN2
Proteasome
map03050
Gene Ontology
GO term
Ontology
Name
GO:0042176
biological_process
regulation of protein catabolic process
GO:0000502
cellular_component
proteasome complex
GO:0030234
molecular_function
enzyme regulator activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
111.724
SRR3591706
second leaf
52.148
SRR3591707
mature leaf
37.720
SRR3591708
Shoot apex
92.322
SRR3591709
Stem
72.505
SRR3591710
White floral bud
106.003
SRR3591711
White flower
133.013
SRR3591712
Green floral bud
75.274
SRR3591713
Yellow flower
84.929
SRP173429
SRR8316895
Juvenile bud stage
56.386
SRR8316896
Juvenile bud stage
77.150
SRR8316897
Juvenile bud stage
34.599
SRR8316894
Third green stage
36.816
SRR8316900
Third green stage
100.435
SRR8316901
Third green stage
92.109
SRR8316898
Complete white stage
44.453
SRR8316899
Complete white stage
110.211
SRR8316903
Complete white stage
82.538
SRR8316902
Silver flowering stage
57.623
SRR8316904
Silver flowering stage
81.635
SRR8316905
Silver flowering stage
35.005
SRR8316906
Gold flowering stage
137.024
SRR8316907
Gold flowering stage
140.015
SRR8316908
Gold flowering stage
141.385
SRP132670
SRR6706286
Control
88.992
SRR6706287
Light intensity 50%
94.081
SRR6706288
Light intensity 20%
97.857
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
46.075
CNS0095593
Slightly white alabastrum(diploid) 2
50.795
CNS0095594
Slightly white alabastrum(diploid) 3
38.070
CNS0095595
Whole white alabastrum(diploid) 2
43.297
CNS0095596
Whole white alabastrum(diploid) 3
39.466
CNS0095597
Whole white alabastrum(diploid) 4
36.795
CNS0095598
Silvery flower (diploied) 1
50.323
CNS0095599
Silvery flower (diploied) 2
47.970
CNS0095600
Silvery flower (diploied) 3
134.971
CNS0095601
Golden flower (diploid) 1
40.080
CNS0095602
Golden flower (diploid) 2
115.296
CNS0095603
Golden flower (diploid) 3
112.959
CNS0095604
Slightly white alabastrum(tetraploid) 1
60.093
CNS0095605
Slightly white alabastrum(tetraploid) 2
47.743
CNS0095606
Slightly white alabastrum(tetraploid) 3
125.072
CNS0095607
Whole white alabastrum(tetraploid) 1
33.118
CNS0095608
Whole white alabastrum(tetraploid) 2
28.612
CNS0095609
Whole white alabastrum(tetraploid) 3
87.999
CNS0095610
Silvery flower (diploied) 1
113.354
CNS0095611
Silvery flower (diploied) 2
113.339
CNS0095612
Silvery flower (diploied) 3
113.470
CNS0095613
Golden flower (tetraploid) 1
48.640
CNS0095614
Golden flower (tetraploid) 2
84.965
CNS0095615
Golden flower (tetraploid) 3
116.069
CRA001975
CRR073297
Stem 1
103.113
CRR073298
Stem 2
98.618
CRR073299
Stem 3
112.678
CRR073300
Leaf 1
131.494
CRR073301
Leaf 2
110.602
CRR073302
Leaf 3
103.865
CRR073303
Juvenile bud 1
117.203
CRR073304
Juvenile bud 2
112.986
CRR073305
Juvenile bud 3
143.431
CRR073306
Third green 1
90.561
CRR073307
Third green 2
65.348
CRR073308
Third green 3
88.620
CRR073309
Second white 1
127.959
CRR073310
Second white 2
119.347
CRR073311
Second white 3
119.792
CRR073312
Silver flowering 1
93.585
CRR073313
Silver flowering 2
108.940
CRR073314
Silver flowering 3
90.718
CRR073315
Gold flowering 1
47.584
CRR073316
Gold flowering 2
69.263
CRR073317
Gold flowering 3
63.369
CRR073318
Tawny withering 1
85.586
CRR073319
Tawny withering 2
63.259
CRR073320
Tawny withering 3
82.839