Gene detail

Detail information of GWHGAAZE013028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766455.1	0	PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Nicotiana sylvestris]
Swissprot	tr\|O24412\|PSD7A_ARATH	0	26S proteasome non-ATPase regulatory subunit 7 homolog A
trEMBL	tr\|B9HHL6\|B9HHL6_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE89511.2}
TAIR10	AT5G05780.1	2E-146	RP non-ATPase subunit 8A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95584262	95589585	+
GWHAAZE00000003	mRNA	95584262	95589585	+
GWHAAZE00000003	exon	95584262	95584448	+
GWHAAZE00000003	exon	95584541	95584573	+
GWHAAZE00000003	exon	95585904	95585996	+
GWHAAZE00000003	exon	95586101	95586182	+
GWHAAZE00000003	exon	95587275	95587371	+
GWHAAZE00000003	exon	95587524	95587599	+
GWHAAZE00000003	exon	95587677	95587744	+
GWHAAZE00000003	exon	95588268	95588390	+
GWHAAZE00000003	exon	95588707	95588764	+
GWHAAZE00000003	exon	95588853	95588938	+
GWHAAZE00000003	exon	95589514	95589585	+
GWHAAZE00000003	CDS	95584262	95584448	+
GWHAAZE00000003	CDS	95584541	95584573	+
GWHAAZE00000003	CDS	95585904	95585996	+
GWHAAZE00000003	CDS	95586101	95586182	+
GWHAAZE00000003	CDS	95587275	95587371	+
GWHAAZE00000003	CDS	95587524	95587599	+
GWHAAZE00000003	CDS	95587677	95587744	+
GWHAAZE00000003	CDS	95588268	95588390	+
GWHAAZE00000003	CDS	95588707	95588764	+
GWHAAZE00000003	CDS	95588853	95588938	+
GWHAAZE00000003	CDS	95589514	95589585	+

Transcript Sequence
>GWHTAAZE013042 ATGGACGTGATAAAGTCACAGCAAATATCATCGAGGCCGATCGAGAAGGTAATTGTACACCCTCTCGTACTTCTCAGCATAGTCGACAATTACAACAGAGTCGCCAAAGACACGCGCAAGCGTGTCGTCGGAGTTCTCCTCGGCAGTTCATTCAAAGGCACCGTAGATGTCACCAATAGCTACGCCGGTCTTCTGTACCTCAATTGTGTTGTGGATGACTTGCCTTTCGAAGAAGACGATAAGGATCCAAGCATATGGTTTCTTGACCACAACTACCATGAGTCAATGTTTTCTATGTTCAAGAGAATAAATGCCAAGGAGCATGTTGTGGGTTGGTATAGCACGGGTCCAAAGTTGAGGGAGAATGACCTAGATATTCACGGCTTATTTACTGACTACGTCCCAAATCCTGTGTTGGTAATAATAGATGTCCAACCTAAGGAGCTGGGAATACCCACCAAAGCTTACTATGCAGTTGAAGAAGTTAAGGAGAATGCTACTCAGAAAAGCCAGAAGGTTTTCGTTCATGTTCCTTCAGAAATTGCTGCTCATGAAGTGGAGGAAATTGAAACAAAGATGATGCATATCCTTGTACTCAATTTCATGTCAACAGGAGTTGAGCACTTGCTGAGGGATGTCACTGGGAAGCTTGCAGCCTTGAAAGGTTTAGATGCACGGCTACAAGAGATACGTGGGTACCTCGATCTAGTTATTGATGGAAAGCTTCCATTAAATCATGAGATTCTATACCATTTGCAGGATGTATTTAATCTTCTTCCCAATCTCAACGTGGCCGAGTTAATCAAGGCATTTGCGGTGAAAACAAATGACCAGATGTTGGTCATATATCTTTCGTCCCTGATCCGAAGTGTGATTGCTCTCCACAACCTGATCAATAACAAGATGCTTAACAAGGAACATGAGAAAGCGGAGGATTCAAAACCGGCGGCTGTAGCACCTGTTGCTGGAAGCTGA

Network for GWHGAAZE013028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	15	135	1.90E-24
PF13012.7	MitMem_reg	205	299	1.40E-28

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03038	PSMD7, RPN8	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005838	cellular_component	proteasome regulatory particle
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	127.797
	SRR3591706	second leaf	63.936
	SRR3591707	mature leaf	50.487
	SRR3591708	Shoot apex	86.048
	SRR3591709	Stem	77.329
	SRR3591710	White floral bud	100.558
	SRR3591711	White flower	134.957
	SRR3591712	Green floral bud	107.385
	SRR3591713	Yellow flower	126.463
SRP173429	SRR8316895	Juvenile bud stage	61.641
	SRR8316896	Juvenile bud stage	83.288
	SRR8316897	Juvenile bud stage	41.700
	SRR8316894	Third green stage	39.063
	SRR8316900	Third green stage	137.771
	SRR8316901	Third green stage	123.149
	SRR8316898	Complete white stage	88.197
	SRR8316899	Complete white stage	179.622
	SRR8316903	Complete white stage	110.032
	SRR8316902	Silver flowering stage	74.895
	SRR8316904	Silver flowering stage	85.446
	SRR8316905	Silver flowering stage	47.031
	SRR8316906	Gold flowering stage	151.819
	SRR8316907	Gold flowering stage	139.385
	SRR8316908	Gold flowering stage	154.502
SRP132670	SRR6706286	Control	85.486
	SRR6706287	Light intensity 50%	90.558
	SRR6706288	Light intensity 20%	106.323
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	69.226
	CNS0095593	Slightly white alabastrum(diploid) 2	78.097
	CNS0095594	Slightly white alabastrum(diploid) 3	63.346
	CNS0095595	Whole white alabastrum(diploid) 2	61.950
	CNS0095596	Whole white alabastrum(diploid) 3	68.900
	CNS0095597	Whole white alabastrum(diploid) 4	58.495
	CNS0095598	Silvery flower (diploied) 1	57.485
	CNS0095599	Silvery flower (diploied) 2	57.228
	CNS0095600	Silvery flower (diploied) 3	118.365
	CNS0095601	Golden flower (diploid) 1	45.885
	CNS0095602	Golden flower (diploid) 2	101.781
	CNS0095603	Golden flower (diploid) 3	98.729
	CNS0095604	Slightly white alabastrum(tetraploid) 1	80.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.552
	CNS0095606	Slightly white alabastrum(tetraploid) 3	121.813
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	105.381
	CNS0095610	Silvery flower (diploied) 1	121.547
	CNS0095611	Silvery flower (diploied) 2	112.820
	CNS0095612	Silvery flower (diploied) 3	113.416
	CNS0095613	Golden flower (tetraploid) 1	83.391
	CNS0095614	Golden flower (tetraploid) 2	109.713
	CNS0095615	Golden flower (tetraploid) 3	119.894
CRA001975	CRR073297	Stem 1	105.701
	CRR073298	Stem 2	106.911
	CRR073299	Stem 3	117.590
	CRR073300	Leaf 1	133.259
	CRR073301	Leaf 2	138.618
	CRR073302	Leaf 3	161.222
	CRR073303	Juvenile bud 1	174.850
	CRR073304	Juvenile bud 2	203.485
	CRR073305	Juvenile bud 3	174.045
	CRR073306	Third green 1	150.894
	CRR073307	Third green 2	138.149
	CRR073308	Third green 3	123.077
	CRR073309	Second white 1	142.001
	CRR073310	Second white 2	136.990
	CRR073311	Second white 3	126.340
	CRR073312	Silver flowering 1	123.761
	CRR073313	Silver flowering 2	126.420
	CRR073314	Silver flowering 3	111.713
	CRR073315	Gold flowering 1	64.911
	CRR073316	Gold flowering 2	63.655
	CRR073317	Gold flowering 3	60.556
	CRR073318	Tawny withering 1	114.293
	CRR073319	Tawny withering 2	86.631
	CRR073320	Tawny withering 3	128.297