Gene detail

Detail information of GWHGAAZE015930

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082554.1	7.949E-165	PREDICTED: proteasome subunit beta type-4-like [Sesamum indicum]
Swissprot	tr\|Q7DLR9\|PSB4_ARATH	4E-149	Proteasome subunit beta type-4 (Precursor)
trEMBL	tr\|M1AE64\|M1AE64_SOLTU	4E-163	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT1G56450.1	5E-118	20S proteasome beta subunit G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	63491794	63504491	+
GWHAAZE00000004	mRNA	63491794	63504491	+
GWHAAZE00000004	exon	63491794	63491859	+
GWHAAZE00000004	exon	63497516	63497548	+
GWHAAZE00000004	exon	63497652	63497716	+
GWHAAZE00000004	exon	63498161	63498237	+
GWHAAZE00000004	exon	63499179	63499308	+
GWHAAZE00000004	exon	63499443	63499602	+
GWHAAZE00000004	exon	63499683	63499868	+
GWHAAZE00000004	exon	63504378	63504491	+
GWHAAZE00000004	five_prime_UTR	63491794	63491859	+
GWHAAZE00000004	five_prime_UTR	63497516	63497542	+
GWHAAZE00000004	CDS	63497543	63497548	+
GWHAAZE00000004	CDS	63497652	63497716	+
GWHAAZE00000004	CDS	63498161	63498237	+
GWHAAZE00000004	CDS	63499179	63499308	+
GWHAAZE00000004	CDS	63499443	63499602	+
GWHAAZE00000004	CDS	63499683	63499868	+
GWHAAZE00000004	CDS	63504378	63504491	+

Transcript Sequence
>GWHTAAZE015946 CCTTTAGCAGTCTAGCTCACTCCCTCCCGTCATCTTCTGGCGGTCCGGCCCCCTCCCTCTCGTCAATTCAACGATCAAGTCTAAATTCCAACAATGAACTTGGTTGATTCAACTCCAGCTAATAACAGCTTAAGGATCTCCGAAGCTTCATCTGAAAGAACGCTGTACCCATATGTGACGGGCACATCTGTGCTTGGCATCAAATACAAGGATGGTATTCTTATGGCTGCCGACATGGGAGGGTCATATGGTTCTACCCTGCGTTACAAGAGTGTGGAGCGAATGAAGCCAGTTGGGAAGCACTCTCTTATTGGTGCAAGTGGAGAAATTAGCGATTTCCAAGAGATTATGCGTTCACTTGACAACCTTATCTTGTACGACAATATGTGGGATGATGGAAATTCCTTGGGCCCTAAAGAGGTCCATAACTATTTAACTCGTATGATGTACAACCGTCGCAACAAATTCGACCCTTTGTGGAATTCACTTGTACTTGGTGGAGTGAAAAATGGACAGAAGTATCTTGGAACGGTTAGTATGATTGGTGTACATTATGAGGACAATCATGTTGCCACTGGATTTGGAAATCACCTTGCGCGGCCAATTTTCCGTGATGAATGGCACGAGAACATGAGTTTCGAGGATGGTGTTAAGTTATTAGAGAAATGCATGCGTGTTCTTCTATATCGGGATAGGTCTGCCATCAACAAGCTTCAGATAGCCAAAATAACAGAAGAGGGTGTAACAGTTTCTCAGCCCTACTCTTTGAAAACCTTCTGGAACTTTGCTGCTTTTCAGAATCCAACCCTTGGTGCTGAGGGGTCGTGGTAG

Network for GWHGAAZE015930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	29	212	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02736	PSMB4	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.359
	SRR3591706	second leaf	39.416
	SRR3591707	mature leaf	35.810
	SRR3591708	Shoot apex	58.729
	SRR3591709	Stem	57.632
	SRR3591710	White floral bud	97.278
	SRR3591711	White flower	179.828
	SRR3591712	Green floral bud	82.695
	SRR3591713	Yellow flower	186.531
SRP173429	SRR8316895	Juvenile bud stage	43.826
	SRR8316896	Juvenile bud stage	59.692
	SRR8316897	Juvenile bud stage	23.088
	SRR8316894	Third green stage	26.594
	SRR8316900	Third green stage	75.661
	SRR8316901	Third green stage	72.377
	SRR8316898	Complete white stage	35.637
	SRR8316899	Complete white stage	97.468
	SRR8316903	Complete white stage	51.183
	SRR8316902	Silver flowering stage	36.333
	SRR8316904	Silver flowering stage	47.254
	SRR8316905	Silver flowering stage	26.151
	SRR8316906	Gold flowering stage	89.651
	SRR8316907	Gold flowering stage	87.261
	SRR8316908	Gold flowering stage	75.261
SRP132670	SRR6706286	Control	68.167
	SRR6706287	Light intensity 50%	69.638
	SRR6706288	Light intensity 20%	80.323
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.660
	CNS0095593	Slightly white alabastrum(diploid) 2	62.192
	CNS0095594	Slightly white alabastrum(diploid) 3	59.729
	CNS0095595	Whole white alabastrum(diploid) 2	54.843
	CNS0095596	Whole white alabastrum(diploid) 3	56.622
	CNS0095597	Whole white alabastrum(diploid) 4	51.399
	CNS0095598	Silvery flower (diploied) 1	66.619
	CNS0095599	Silvery flower (diploied) 2	62.239
	CNS0095600	Silvery flower (diploied) 3	98.264
	CNS0095601	Golden flower (diploid) 1	65.144
	CNS0095602	Golden flower (diploid) 2	89.785
	CNS0095603	Golden flower (diploid) 3	86.175
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.781
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.892
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.815
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.960
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.999
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.961
	CNS0095610	Silvery flower (diploied) 1	118.699
	CNS0095611	Silvery flower (diploied) 2	128.822
	CNS0095612	Silvery flower (diploied) 3	99.774
	CNS0095613	Golden flower (tetraploid) 1	111.724
	CNS0095614	Golden flower (tetraploid) 2	114.005
	CNS0095615	Golden flower (tetraploid) 3	157.099
CRA001975	CRR073297	Stem 1	66.476
	CRR073298	Stem 2	64.209
	CRR073299	Stem 3	81.564
	CRR073300	Leaf 1	71.033
	CRR073301	Leaf 2	71.201
	CRR073302	Leaf 3	82.107
	CRR073303	Juvenile bud 1	95.926
	CRR073304	Juvenile bud 2	82.439
	CRR073305	Juvenile bud 3	82.422
	CRR073306	Third green 1	44.859
	CRR073307	Third green 2	43.415
	CRR073308	Third green 3	41.675
	CRR073309	Second white 1	89.706
	CRR073310	Second white 2	76.176
	CRR073311	Second white 3	66.981
	CRR073312	Silver flowering 1	57.791
	CRR073313	Silver flowering 2	58.609
	CRR073314	Silver flowering 3	44.754
	CRR073315	Gold flowering 1	68.292
	CRR073316	Gold flowering 2	91.562
	CRR073317	Gold flowering 3	68.166
	CRR073318	Tawny withering 1	62.053
	CRR073319	Tawny withering 2	64.941
	CRR073320	Tawny withering 3	66.744