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Detail information of GWHGAAZE017716
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
CDP15036.1
0
unnamed protein product [Coffea canephora]
Swissprot
tr|Q93Y35|PSMD6_ARATH
0
26S proteasome non-ATPase regulatory subunit 6 homolog
trEMBL
tr|A0A068V301|A0A068V301_COFCA
0
Coffea canephora DH200=94 genomic scaffold, scaffold_94 {ECO:0000313|EMBL:CDP15036.1}
TAIR10
AT4G24820.2
0
26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
10002441
10006614
-
GWHAAZE00000005
mRNA
10002441
10006614
-
GWHAAZE00000005
exon
10006479
10006614
-
GWHAAZE00000005
exon
10006276
10006390
-
GWHAAZE00000005
exon
10005255
10005345
-
GWHAAZE00000005
exon
10005013
10005158
-
GWHAAZE00000005
exon
10004687
10004906
-
GWHAAZE00000005
exon
10004457
10004565
-
GWHAAZE00000005
exon
10002879
10003047
-
GWHAAZE00000005
exon
10002441
10002615
-
GWHAAZE00000005
CDS
10006479
10006614
-
GWHAAZE00000005
CDS
10006276
10006390
-
GWHAAZE00000005
CDS
10005255
10005345
-
GWHAAZE00000005
CDS
10005013
10005158
-
GWHAAZE00000005
CDS
10004687
10004906
-
GWHAAZE00000005
CDS
10004457
10004565
-
GWHAAZE00000005
CDS
10002879
10003047
-
GWHAAZE00000005
CDS
10002441
10002615
-
Transcript Sequence
>GWHTAAZE017736 ATGGAAGGTCAAGAGGATACACAGCAACCTCACCTAGTGCTGGCCAACAAGCTATTCCTCCTCACTCATCCCGATGTTGAAGACATCGACAAAGTCCGCCTCCGTGACGAGGTCCTCGCCTCCGTCGTAGCCGACGACATGGCTCCCCTCTACGAAACCCTAGCCGCCAGTTCAGTGCTGAATTTGGATCAGAAGGTGCTGGATTCGATGCGCGCTAAGATCGAAGACGAACTCAAGAAGCTTGATGAAAAGATTACTGATGCTGAAGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCGAAGTCCTTGTTTTACATTCGAATTGGTGACAAGGAGAAGGCATTGGAACAACTCAAGTTAACTGAGAGTAAAACAGTTGCAGTTGGGCAAAGGATGGACTTGGTGTTCCATACACTACAGATTGGTTTTTTCTACATGGATTTTGACCTTATCTCCAAAAGCATTGATAAAGCGAAGAAGTTATTTGAGGAAGGAGGTGACTGGGAAAGGAAGAATCGTTTGAAAGTATACGAAGGCTTGTACTGTATGTCAACTCGTAACTTTAAGAAAGCAGCTGATTTCTTCCTTGATTCTATCTCAACGTTCACAACTTACGAGCTTTTTACTTACGACACATTCATATTCTACACTGTCCTCACAAGCATTATAACATTGGATAGAGTTTCCTTGAAACAAAAGGTAGTGGATGCTCCTGAGATCCTGACTGTAATTGGAAAAATCCCGTACTTGTCTGAGTTTTTGAATTCTCTATATGATTGTCAATATAAATCATTTTTCTCCGCATTCGCTGGGCTGACGGAGCATATTAAATTGGATCGTTACCTACATCCACACTTCCGGTATTACATGAGGGAGATTAGGACAGTTGTTTATTCCCAGTTCCTGGAATCATACAAGAGCGTCACCATTGATGCAATGGCAAAGGCATTTGGGGTCACAGTGGATTTCATTGACTTGGAGCTGTCACGTTTTATTGCAGCAGGGAAGCTTCATTGCAAGATTGATAAAGTAGCAGGAGTATTAGAAACCAATAGGCCGGATGCAAAGAATGCACTTTACCAAGCGACTATTAAGCAAGGGGACTTTTTGTTGAACCGAATTCAGAAGTTGTCTCGTGTCATTGATCTTTGA
Network for GWHGAAZE017716
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF10602.10
RPN7
63
236
2.30E-59
PF01399.28
PCI
254
354
1.30E-15
Protein Sequence
>GWHPAAZE017726 MEGQEDTQQPHLVLANKLFLLTHPDVEDIDKVRLRDEVLASVVADDMAPLYETLAASSVLNLDQKVLDSMRAKIEDELKKLDEKITDAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKLTESKTVAVGQRMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADFFLDSISTFTTYELFTYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEHIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIDAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K03037
PSMD6, RPN7
Proteasome
map03050
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
162.087
SRR3591706
second leaf
74.964
SRR3591707
mature leaf
54.270
SRR3591708
Shoot apex
141.980
SRR3591709
Stem
139.982
SRR3591710
White floral bud
140.848
SRR3591711
White flower
157.553
SRR3591712
Green floral bud
154.109
SRR3591713
Yellow flower
125.345
SRP173429
SRR8316895
Juvenile bud stage
89.757
SRR8316896
Juvenile bud stage
117.215
SRR8316897
Juvenile bud stage
55.251
SRR8316894
Third green stage
55.273
SRR8316900
Third green stage
161.478
SRR8316901
Third green stage
138.364
SRR8316898
Complete white stage
51.525
SRR8316899
Complete white stage
170.535
SRR8316903
Complete white stage
80.950
SRR8316902
Silver flowering stage
43.695
SRR8316904
Silver flowering stage
61.473
SRR8316905
Silver flowering stage
29.614
SRR8316906
Gold flowering stage
91.042
SRR8316907
Gold flowering stage
92.457
SRR8316908
Gold flowering stage
85.366
SRP132670
SRR6706286
Control
88.220
SRR6706287
Light intensity 50%
101.647
SRR6706288
Light intensity 20%
111.336
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
82.161
CNS0095593
Slightly white alabastrum(diploid) 2
100.978
CNS0095594
Slightly white alabastrum(diploid) 3
86.458
CNS0095595
Whole white alabastrum(diploid) 2
81.861
CNS0095596
Whole white alabastrum(diploid) 3
89.368
CNS0095597
Whole white alabastrum(diploid) 4
88.393
CNS0095598
Silvery flower (diploied) 1
83.688
CNS0095599
Silvery flower (diploied) 2
77.067
CNS0095600
Silvery flower (diploied) 3
108.726
CNS0095601
Golden flower (diploid) 1
63.453
CNS0095602
Golden flower (diploid) 2
86.379
CNS0095603
Golden flower (diploid) 3
87.691
CNS0095604
Slightly white alabastrum(tetraploid) 1
82.105
CNS0095605
Slightly white alabastrum(tetraploid) 2
75.714
CNS0095606
Slightly white alabastrum(tetraploid) 3
131.679
CNS0095607
Whole white alabastrum(tetraploid) 1
52.317
CNS0095608
Whole white alabastrum(tetraploid) 2
53.479
CNS0095609
Whole white alabastrum(tetraploid) 3
110.706
CNS0095610
Silvery flower (diploied) 1
117.821
CNS0095611
Silvery flower (diploied) 2
98.094
CNS0095612
Silvery flower (diploied) 3
82.167
CNS0095613
Golden flower (tetraploid) 1
75.757
CNS0095614
Golden flower (tetraploid) 2
94.779
CNS0095615
Golden flower (tetraploid) 3
53.255
CRA001975
CRR073297
Stem 1
102.533
CRR073298
Stem 2
91.190
CRR073299
Stem 3
89.546
CRR073300
Leaf 1
128.385
CRR073301
Leaf 2
107.614
CRR073302
Leaf 3
109.878
CRR073303
Juvenile bud 1
139.803
CRR073304
Juvenile bud 2
125.682
CRR073305
Juvenile bud 3
112.888
CRR073306
Third green 1
38.873
CRR073307
Third green 2
41.097
CRR073308
Third green 3
40.971
CRR073309
Second white 1
36.605
CRR073310
Second white 2
38.844
CRR073311
Second white 3
31.496
CRR073312
Silver flowering 1
20.394
CRR073313
Silver flowering 2
24.503
CRR073314
Silver flowering 3
24.556
CRR073315
Gold flowering 1
33.004
CRR073316
Gold flowering 2
49.002
CRR073317
Gold flowering 3
24.216
CRR073318
Tawny withering 1
90.053
CRR073319
Tawny withering 2
76.097
CRR073320
Tawny withering 3
104.504