Detail information of GWHGAAZE017716


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP15036.10unnamed protein product [Coffea canephora]
Swissprottr|Q93Y35|PSMD6_ARATH026S proteasome non-ATPase regulatory subunit 6 homolog
trEMBLtr|A0A068V301|A0A068V301_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_94 {ECO:0000313|EMBL:CDP15036.1}
TAIR10AT4G24820.2026S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1000244110006614-
GWHAAZE00000005mRNA1000244110006614-
GWHAAZE00000005exon1000647910006614-
GWHAAZE00000005exon1000627610006390-
GWHAAZE00000005exon1000525510005345-
GWHAAZE00000005exon1000501310005158-
GWHAAZE00000005exon1000468710004906-
GWHAAZE00000005exon1000445710004565-
GWHAAZE00000005exon1000287910003047-
GWHAAZE00000005exon1000244110002615-
GWHAAZE00000005CDS1000647910006614-
GWHAAZE00000005CDS1000627610006390-
GWHAAZE00000005CDS1000525510005345-
GWHAAZE00000005CDS1000501310005158-
GWHAAZE00000005CDS1000468710004906-
GWHAAZE00000005CDS1000445710004565-
GWHAAZE00000005CDS1000287910003047-
GWHAAZE00000005CDS1000244110002615-
Transcript Sequence

Network for GWHGAAZE017716

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10602.10RPN7632362.30E-59
PF01399.28PCI2543541.30E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03037PSMD6, RPN7 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf162.087
SRR3591706second leaf74.964
SRR3591707mature leaf54.270
SRR3591708Shoot apex141.980
SRR3591709Stem139.982
SRR3591710White floral bud140.848
SRR3591711White flower157.553
SRR3591712Green floral bud154.109
SRR3591713Yellow flower125.345
SRP173429 SRR8316895Juvenile bud stage 89.757
SRR8316896Juvenile bud stage 117.215
SRR8316897Juvenile bud stage 55.251
SRR8316894Third green stage 55.273
SRR8316900Third green stage 161.478
SRR8316901Third green stage 138.364
SRR8316898Complete white stage 51.525
SRR8316899Complete white stage 170.535
SRR8316903Complete white stage 80.950
SRR8316902Silver flowering stage43.695
SRR8316904Silver flowering stage61.473
SRR8316905Silver flowering stage29.614
SRR8316906Gold flowering stage 91.042
SRR8316907Gold flowering stage 92.457
SRR8316908Gold flowering stage 85.366
SRP132670SRR6706286Control88.220
SRR6706287Light intensity 50%101.647
SRR6706288Light intensity 20%111.336
CNP0000432CNS0095592Slightly white alabastrum(diploid) 182.161
CNS0095593Slightly white alabastrum(diploid) 2100.978
CNS0095594Slightly white alabastrum(diploid) 386.458
CNS0095595Whole white alabastrum(diploid) 281.861
CNS0095596Whole white alabastrum(diploid) 389.368
CNS0095597Whole white alabastrum(diploid) 488.393
CNS0095598Silvery flower (diploied) 183.688
CNS0095599Silvery flower (diploied) 277.067
CNS0095600Silvery flower (diploied) 3108.726
CNS0095601Golden flower (diploid) 163.453
CNS0095602Golden flower (diploid) 286.379
CNS0095603Golden flower (diploid) 387.691
CNS0095604Slightly white alabastrum(tetraploid) 182.105
CNS0095605Slightly white alabastrum(tetraploid) 275.714
CNS0095606Slightly white alabastrum(tetraploid) 3131.679
CNS0095607Whole white alabastrum(tetraploid) 152.317
CNS0095608Whole white alabastrum(tetraploid) 253.479
CNS0095609Whole white alabastrum(tetraploid) 3110.706
CNS0095610Silvery flower (diploied) 1117.821
CNS0095611Silvery flower (diploied) 298.094
CNS0095612Silvery flower (diploied) 382.167
CNS0095613Golden flower (tetraploid) 175.757
CNS0095614Golden flower (tetraploid) 294.779
CNS0095615Golden flower (tetraploid) 353.255
CRA001975CRR073297Stem 1102.533
CRR073298Stem 291.190
CRR073299Stem 389.546
CRR073300Leaf 1128.385
CRR073301Leaf 2107.614
CRR073302Leaf 3109.878
CRR073303Juvenile bud 1139.803
CRR073304Juvenile bud 2125.682
CRR073305Juvenile bud 3112.888
CRR073306Third green 138.873
CRR073307Third green 241.097
CRR073308Third green 340.971
CRR073309Second white 136.605
CRR073310Second white 238.844
CRR073311Second white 331.496
CRR073312Silver flowering 120.394
CRR073313Silver flowering 224.503
CRR073314Silver flowering 324.556
CRR073315Gold flowering 133.004
CRR073316Gold flowering 249.002
CRR073317Gold flowering 324.216
CRR073318Tawny withering 190.053
CRR073319Tawny withering 276.097
CRR073320Tawny withering 3104.504