Gene detail

Detail information of GWHGAAZE021094

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEQ37175.1	1.2725E-165	xyloglucan endotransglucosylase/hydrolase [Diospyros kaki]
COG	YP_004641534.1	1E-14	beta-glucanase
Swissprot	tr\|P35694\|XTH2_SOYBN	9E-159	Xyloglucan endotransglucosylase/hydrolase 2 {ECO:0000250\|UniProtKB:Q38857} (Precursor)
trEMBL	tr\|G5DAC6\|G5DAC6_DIOKA	5E-166	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G14130.1	6E-116	xyloglucan endotransglucosylase/hydrolase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	34961549	34964519	+
GWHAAZE00000006	mRNA	34961549	34964519	+
GWHAAZE00000006	exon	34961549	34961824	+
GWHAAZE00000006	exon	34963195	34963388	+
GWHAAZE00000006	exon	34964153	34964519	+
GWHAAZE00000006	CDS	34961549	34961824	+
GWHAAZE00000006	CDS	34963195	34963388	+
GWHAAZE00000006	CDS	34964153	34964519	+

Transcript Sequence
>GWHTAAZE021118 ATGGGAGGATTCAAATTGCTTGTGTTGGTTAGTAGTGTTCTAATGGTGAGCTCTTTGGTAATGGTTGCTAGTGCTGGTAACTTCTACCAAGACTTTGACCTAACGTGGGGCGATCGCCGCGCCAATATATTCAATGGTGGCAATCTTCTCTCCCTTTCTCTCGACAAAACCTCCGGCTCTGGCTTCAGGTCCAAGAGAGAGTATCTGTTCGGAAGGATTGACATGCAGCTAAAGCTTGTTGCCGGCAACTCTGCCGGCACTGTCACTGCTTACTATCTGTCTTCTCAAGGACCTACTCATGATGAGATAGATTTTGAGTTCTTGGGAAATACTAGTGGGGACCCTTATATTGTGCACACCAATGTGTTCACTCAAGGAAAAGGAGACAGAGAGCAACAATTTTATCTCTGGTTTGACCCTACCAGAAATTTCCACACTTACTCAGTCAGTTGGAATCCCCAACAAATCATTTTTTTGGTGGACAACACTCCCATAAGAGTATTCGACAATGCCGAAAAAGTTGGAGTTCCATTCCCTAAAAACCAACCAATGAGGATCTACTCCAGCCTCTGGAATGCTGATGATTGGGCACGTGGCGGTTTAGTCAAAACCGATTGGACAAAGGCTCCCTTCACCGCGTATTATCGTAACTTCAATGTCCAGAGCTTTAGCTCGAAGTCCTCAGAGGCAGAGTGGCGGAGCCAAAAACTTGATGCCTATAGTAGAAGGAGACTCCGATGGGTTCAAAAGAATTTCATGATTTACAATTATTGTGCAGATCATAAAAGGTTCCCTCATGGCCTTCCTGTCGAGTGTAAACCATCAAAGTATCTCTAG

Network for GWHGAAZE021094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	29	208	1.20E-59
PF06955.13	XET_C	228	272	1.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.317
	SRR3591706	second leaf	10.633
	SRR3591707	mature leaf	2.149
	SRR3591708	Shoot apex	10.292
	SRR3591709	Stem	59.682
	SRR3591710	White floral bud	48.961
	SRR3591711	White flower	100.582
	SRR3591712	Green floral bud	12.630
	SRR3591713	Yellow flower	25.236
SRP173429	SRR8316895	Juvenile bud stage	10.485
	SRR8316896	Juvenile bud stage	8.417
	SRR8316897	Juvenile bud stage	2.841
	SRR8316894	Third green stage	2.221
	SRR8316900	Third green stage	5.106
	SRR8316901	Third green stage	9.191
	SRR8316898	Complete white stage	8.203
	SRR8316899	Complete white stage	4.569
	SRR8316903	Complete white stage	14.906
	SRR8316902	Silver flowering stage	35.509
	SRR8316904	Silver flowering stage	13.301
	SRR8316905	Silver flowering stage	1.197
	SRR8316906	Gold flowering stage	2.959
	SRR8316907	Gold flowering stage	5.063
	SRR8316908	Gold flowering stage	14.497
SRP132670	SRR6706286	Control	9.340
	SRR6706287	Light intensity 50%	7.714
	SRR6706288	Light intensity 20%	7.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.121
	CNS0095593	Slightly white alabastrum(diploid) 2	9.899
	CNS0095594	Slightly white alabastrum(diploid) 3	10.509
	CNS0095595	Whole white alabastrum(diploid) 2	5.603
	CNS0095596	Whole white alabastrum(diploid) 3	2.639
	CNS0095597	Whole white alabastrum(diploid) 4	5.270
	CNS0095598	Silvery flower (diploied) 1	5.319
	CNS0095599	Silvery flower (diploied) 2	2.875
	CNS0095600	Silvery flower (diploied) 3	12.979
	CNS0095601	Golden flower (diploid) 1	0.984
	CNS0095602	Golden flower (diploid) 2	7.353
	CNS0095603	Golden flower (diploid) 3	10.459
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.934
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.232
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.553
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.518
	CNS0095610	Silvery flower (diploied) 1	29.835
	CNS0095611	Silvery flower (diploied) 2	12.264
	CNS0095612	Silvery flower (diploied) 3	9.711
	CNS0095613	Golden flower (tetraploid) 1	8.054
	CNS0095614	Golden flower (tetraploid) 2	6.464
	CNS0095615	Golden flower (tetraploid) 3	5.542
CRA001975	CRR073297	Stem 1	5.670
	CRR073298	Stem 2	4.969
	CRR073299	Stem 3	7.848
	CRR073300	Leaf 1	3.275
	CRR073301	Leaf 2	4.147
	CRR073302	Leaf 3	5.061
	CRR073303	Juvenile bud 1	1.236
	CRR073304	Juvenile bud 2	0.843
	CRR073305	Juvenile bud 3	5.511
	CRR073306	Third green 1	16.974
	CRR073307	Third green 2	24.892
	CRR073308	Third green 3	19.955
	CRR073309	Second white 1	0.865
	CRR073310	Second white 2	1.834
	CRR073311	Second white 3	1.375
	CRR073312	Silver flowering 1	0.706
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.273
	CRR073315	Gold flowering 1	205.126
	CRR073316	Gold flowering 2	254.939
	CRR073317	Gold flowering 3	129.064
	CRR073318	Tawny withering 1	60.681
	CRR073319	Tawny withering 2	19.251
	CRR073320	Tawny withering 3	83.096