Gene detail

Detail information of GWHGAAZE021408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009777937.1	0	PREDICTED: probable sucrose-phosphate synthase 2 [Nicotiana sylvestris]
COG	YP_003529338.1	1E-132	sucrose-phosphate synthase
Swissprot	tr\|O04933\|SPSA2_CRAPL	0	Probable sucrose-phosphate synthase 2
trEMBL	tr\|M1CI66\|M1CI66_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400067951}
TAIR10	AT1G04920.1	0	sucrose phosphate synthase 3F

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	52181769	52194010	+
GWHAAZE00000006	mRNA	52181769	52194010	+
GWHAAZE00000006	exon	52181769	52182081	+
GWHAAZE00000006	exon	52182271	52182305	+
GWHAAZE00000006	exon	52184059	52184291	+
GWHAAZE00000006	exon	52185376	52185439	+
GWHAAZE00000006	exon	52185730	52186419	+
GWHAAZE00000006	exon	52187529	52187663	+
GWHAAZE00000006	exon	52187784	52187915	+
GWHAAZE00000006	exon	52188305	52188481	+
GWHAAZE00000006	exon	52190017	52190070	+
GWHAAZE00000006	exon	52190161	52190223	+
GWHAAZE00000006	exon	52191061	52192101	+
GWHAAZE00000006	exon	52192603	52192767	+
GWHAAZE00000006	exon	52193792	52194010	+
GWHAAZE00000006	CDS	52181769	52182081	+
GWHAAZE00000006	CDS	52182271	52182305	+
GWHAAZE00000006	CDS	52184059	52184291	+
GWHAAZE00000006	CDS	52185376	52185439	+
GWHAAZE00000006	CDS	52185730	52186419	+
GWHAAZE00000006	CDS	52187529	52187663	+
GWHAAZE00000006	CDS	52187784	52187915	+
GWHAAZE00000006	CDS	52188305	52188481	+
GWHAAZE00000006	CDS	52190017	52190070	+
GWHAAZE00000006	CDS	52190161	52190223	+
GWHAAZE00000006	CDS	52191061	52192101	+
GWHAAZE00000006	CDS	52192603	52192767	+
GWHAAZE00000006	CDS	52193792	52194010	+

Transcript Sequence
>GWHTAAZE021432 ATGGCAGGGAACGAGTGGATAAACGGCTACTTGGAGGCGATATTGGATTCCGGTGCATCGGCGATTGAGGAAAAGCCGACGCCGGTGAATGTGAGGGACAGGGGCAATTTTAATCCGACGAAGTATTTTGTGGAGGAAGTGGTTACTGGTGTTGATGAGACTGATCTACACAGAACATGGATCAAAGTGGTCGCCACTCGCAATACGAGAGAACGGAGTTCCAGGCTCGAGAATATGTGTTGGCGAATTTGGCATCTCACTCGCAAAAAGAAGCAGGTATATATTTATATATGTATCTTTATATGGCTTTTCTATAAACATGTTCGTGTAGAAATACGTAGAGAAAATTTGGAATGGGAGGACTTCCAACGGTTAGCCAACAGGAAGTGGGAGCGGGAACAAGGACGGAGGGATGTGACCGAGGACATGTCTGAAGATTTGTCCGAAGGAGAGAAGGGAGATGTTTTGGGAGATACAGCAACAGTTGAAAGTCCGAGGACCAGAAAGTTTCAACGCAATTTCTCCAACTTGGAAGTATGGGATAATAACAAGGAGAAGAAGCTTTACATTGTTCTTATTAGTTTACACGGTTTGGTGCGAGGAGAAAACATGGAGCTCGGCCGTGATTCTGATACCGGCGGTCAGATTAAATATGTCGTAGAGCTTGCTCGGGCACTAGCTAAGATGGCCGGGGTGTATAGGGTAGACCTCTTCACCCGCCAGGTAGCATCGCCTGAAGTAGACTGGAGCTATGGGGAGCCCACCGAGATGCTTACGGCAGGTTCCAATGATGCTGACGTGGGAGAAAGTAGTGGGGCTTATATTATAAGGATACCCTTTGGTCCTCGAGACAAATACCTTCGAAAGGAGTTACTTTGGCCTCATATTCAAGAATTCGTAGATGGAGCACTTTCCCACATTCTAAATATGTCAAAAGCTTTGAGCGAACAAATCGGTGAGGGCCAACCCATTTGGCCATACGTCATACATGGCCATTATGCAGATGCAGGGGATAGTGCCGCCCTTCTTTCTGGTGCTTTAAATGTTCCTATGGTTCTTACGGGGCACTCACTTGGTAGAAACAAACTAGAACAGCTTCTTAAGCAAGGGAGGCAGTCGAAAGAGGATATTAATTCGACATATAAGATTATGAGGAGAATAGAAGCAGAGGAGCTTTCTTTGGATGCGGCAGAGCTTGTTATAACAAGCACCAAACAGGAGATTGAAGAACAGTGGGGATTGTATGATGGGTTCGATGTGAAACTTGAGAAAGTTTTGCGGGCCCGGTCTAGACGGGGAGTCAACTGCCATGGCCGGTTCATGCCAAGGATGGCGGTAATCCCTCCAGGTATGGACTTCAGCAATGTTGTGAACCAAGAAGATAATGCTGAATCTGCAGATGGGGACCTCACTCCAGTAACTAATGCTGAAGGGTCTTCTCCAAAAGCTGTCCCAGTAATATGGTCAGAAGTTATGCGTTTCTTGACAAATCCCCATAAGCCAATGATTCTGGCCTTATCGAGACCAGATCCGAAGAAAAACATCACCACTCTTTTGAAAGCCTTTGGAGAATGCAGGCCTCTAAGGGAGCTTGCTAATCTTACCCTTATAATGGGAAATAGGGACGATATAGATGAGATGTCTGCTGCGAATGCTAGTGTCCTCACAACAGTATTGAAACTGGTAGATAGGTATGATCTTTATGGGCAAGTGGCCTTCCCTAAGCATCACAAGCAAAATGATGTTCCAGAAATCTATCGCCTTGCTGCTAGAACAAAGGGAGTTTTCATAAATCCAGCTTTGGTTGAGCCTTTTGGGCTTACCTTGATTGAGGCTGCAGCACATGGACTTCCAATGGTGGCTACAAAAAACGGTGGTCCAGTTGACATTCACAGGGTGCTGAACAACGGTCTACTCATAGACCCTCACGATCAGAACGCAATTGCCAATGCACTGCTTAAGCTAGTGTCAGAAAAGAACTTGTGGACCGAATGCCAAAGAAATGGTTGGAGAAACATACATCTCTTCTCATGGCCAGAGCACTGCCGCACATACCTAACGAGGGTGGCGGCCTGCCGGATGAGGCACCCACAATGGAAAACTGACACACCCACGGACGAATTTTCAGCCGAAGGGTCCCTAAACGATTCCCTTAAAGATGTGCAAGATATGTCCCTAAGGCTCTCCATTGATGGTGAAAGATCCTCAATAAATGAATCGCTAGATTACTCAAATGCAGGTGGTGGTGACCCGGTACAAGACCAAGTTAAACGTGTCTTAAGCAAGATCAAGAAGCCCGAAAATGGGGGACCCGATTCTGAAAATGACAAGAAAATGGCTGATAGTTTGCCAAGCAAGTATCCTATGTTGAGGAGAAGGCGCCGTTTGATTGTTATAGCACTCGATTATTATGAGAGCAATGGAGCACCAGATAAGCGAATGATTCAGATACTGCAAGAGATATTTAGAGCTGTTAAAATGGATGCAGAAGCTGCAAGATTTGCGGGTTTCGCTATATCGACAGCTATGCCTCTATGGGAGTTCACAGCGTTCTTGAAACACGGGAATATTAAGGTTAATGAGTTTGATGCTTTGATTTGTAGCAGTGGGAGTGAATTGTACTACCCTGGTACTTACAGTGAGGAAGATGGAATGGTCTGTCCTGACCCGGATTATGCTTCCCATATTGATTATCGTTGGGGTTCGGACGGCATAAAGAAAACCATTTGGAAACTTATGAATACGGTCGAAGGTGAGGAAAAATCTTCCAAAGCTTCACCTCCCATTGAGGAAGATTCAAAGTCGAGCAATTCTCATTGTCTCTCGTACTTGATAAAGGATGTCAGGAAGGTAAGTTTTAGAGCATTGGCAGTGGATGATCTCTGTTTGTGTTTGCTTGTCCCAAATAGATGCAAGCATTGTATCTTTTTCATTTGTGCAAGGAAAGTGGATGATATGAGGCAAAAGCTAAGGATGCGTGGCCTCCGCTGCCATTTGATGTATTGCAGGAACTCAACAAGAATTCAAGCTATCCCTCTTCTTGCATCTCGAGCACAGGCTCTCAGGTAATATATATATATATATATATATACGCACACATATGATTACGAGGAACTGATATCCGGCACCCACAAGACACTAATCATGAAAGGAGTTGTAGAGAAAGGTTCGGAGGAGTTACTTAGAACAGCCGGAAGCTATCTAAGAGACGATATTGTTCCAGGAGAGAGCCCACTGGTCACCTACGCGACCAGTGGAGCCAAAGCCGAAGATATTGCAAATGCATTAGCGCAAGTATCCAAATATTCTGCAGGAATGTGA

Network for GWHGAAZE021408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	189	453	2.20E-11
PF00534.21	Glycos_transf_1	496	669	4.30E-24

Protein Sequence

>GWHPAAZE021421
MAGNEWINGYLEAILDSGASAIEEKPTPVNVRDRGNFNPTKYFVEEVVTGVDETDLHRTWIKVVATRNTRERSSRLENMCWRIWHLTRKKKQVYIYICIFIWLFYKHVRVEIRRENLEWEDFQRLANRKWEREQGRRDVTEDMSEDLSEGEKGDVLGDTATVESPRTRKFQRNFSNLEVWDNNKEKKLYIVLISLHGLVRGENMELGRDSDTGGQIKYVVELARALAKMAGVYRVDLFTRQVASPEVDWSYGEPTEMLTAGSNDADVGESSGAYIIRIPFGPRDKYLRKELLWPHIQEFVDGALSHILNMSKALSEQIGEGQPIWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKIMRRIEAEELSLDAAELVITSTKQEIEEQWGLYDGFDVKLEKVLRARSRRGVNCHGRFMPRMAVIPPGMDFSNVVNQEDNAESADGDLTPVTNAEGSSPKAVPVIWSEVMRFLTNPHKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLIMGNRDDIDEMSAANASVLTTVLKLVDRYDLYGQVAFPKHHKQNDVPEIYRLAARTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLNNGLLIDPHDQNAIANALLKLVSEKNLWTECQRNGWRNIHLFSWPEHCRTYLTRVAACRMRHPQWKTDTPTDEFSAEGSLNDSLKDVQDMSLRLSIDGERSSINESLDYSNAGGGDPVQDQVKRVLSKIKKPENGGPDSENDKKMADSLPSKYPMLRRRRRLIVIALDYYESNGAPDKRMIQILQEIFRAVKMDAEAARFAGFAISTAMPLWEFTAFLKHGNIKVNEFDALICSSGSELYYPGTYSEEDGMVCPDPDYASHIDYRWGSDGIKKTIWKLMNTVEGEEKSSKASPPIEEDSKSSNSHCLSYLIKDVRKVSFRALAVDDLCLCLLVPNRCKHCIFFICARKVDDMRQKLRMRGLRCHLMYCRNSTRIQAIPLLASRAQALRYIYIYIYTHTYDYEELISGTHKTLIMKGVVEKGSEELLRTAGSYLRDDIVPGESPLVTYATSGAKAEDIANALAQVSKYSAGM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00696	E2.4.1.14	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0046524	molecular_function	sucrose-phosphate synthase activity
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.270
	SRR3591706	second leaf	6.413
	SRR3591707	mature leaf	10.008
	SRR3591708	Shoot apex	2.302
	SRR3591709	Stem	0.436
	SRR3591710	White floral bud	2.924
	SRR3591711	White flower	0.299
	SRR3591712	Green floral bud	18.485
	SRR3591713	Yellow flower	0.311
SRP173429	SRR8316895	Juvenile bud stage	4.959
	SRR8316896	Juvenile bud stage	12.006
	SRR8316897	Juvenile bud stage	5.208
	SRR8316894	Third green stage	3.597
	SRR8316900	Third green stage	12.908
	SRR8316901	Third green stage	12.496
	SRR8316898	Complete white stage	0.050
	SRR8316899	Complete white stage	0.559
	SRR8316903	Complete white stage	0.245
	SRR8316902	Silver flowering stage	0.014
	SRR8316904	Silver flowering stage	0.133
	SRR8316905	Silver flowering stage	0.022
	SRR8316906	Gold flowering stage	0.132
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.196
SRP132670	SRR6706286	Control	9.793
	SRR6706287	Light intensity 50%	9.916
	SRR6706288	Light intensity 20%	8.745
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.906
	CNS0095593	Slightly white alabastrum(diploid) 2	3.435
	CNS0095594	Slightly white alabastrum(diploid) 3	8.017
	CNS0095595	Whole white alabastrum(diploid) 2	11.257
	CNS0095596	Whole white alabastrum(diploid) 3	14.923
	CNS0095597	Whole white alabastrum(diploid) 4	13.712
	CNS0095598	Silvery flower (diploied) 1	0.724
	CNS0095599	Silvery flower (diploied) 2	1.391
	CNS0095600	Silvery flower (diploied) 3	0.392
	CNS0095601	Golden flower (diploid) 1	1.821
	CNS0095602	Golden flower (diploid) 2	0.991
	CNS0095603	Golden flower (diploid) 3	0.948
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.846
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.571
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.847
	CNS0095610	Silvery flower (diploied) 1	0.415
	CNS0095611	Silvery flower (diploied) 2	0.580
	CNS0095612	Silvery flower (diploied) 3	0.940
	CNS0095613	Golden flower (tetraploid) 1	0.163
	CNS0095614	Golden flower (tetraploid) 2	0.616
	CNS0095615	Golden flower (tetraploid) 3	0.371
CRA001975	CRR073297	Stem 1	7.521
	CRR073298	Stem 2	5.900
	CRR073299	Stem 3	7.379
	CRR073300	Leaf 1	9.886
	CRR073301	Leaf 2	7.421
	CRR073302	Leaf 3	5.974
	CRR073303	Juvenile bud 1	6.123
	CRR073304	Juvenile bud 2	4.430
	CRR073305	Juvenile bud 3	0.316
	CRR073306	Third green 1	0.630
	CRR073307	Third green 2	0.390
	CRR073308	Third green 3	0.405
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.337
	CRR073311	Second white 3	0.073
	CRR073312	Silver flowering 1	0.448
	CRR073313	Silver flowering 2	0.299
	CRR073314	Silver flowering 3	0.303
	CRR073315	Gold flowering 1	6.780
	CRR073316	Gold flowering 2	11.590
	CRR073317	Gold flowering 3	8.424
	CRR073318	Tawny withering 1	0.825
	CRR073319	Tawny withering 2	0.773
	CRR073320	Tawny withering 3	0.686