Gene detail

Detail information of GWHGAAZE022490

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007226999.1	0	hypothetical protein PRUPE_ppa001577mg [Prunus persica]
Swissprot	tr\|P17801\|KPRO_MAIZE	1E-62	Putative receptor protein kinase ZmPK1 (Precursor)
trEMBL	tr\|M5Y1R6\|M5Y1R6_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ28198.1}
TAIR10	AT1G34300.1	5E-49	lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73398040	73400430	+
GWHAAZE00000006	mRNA	73398040	73400430	+
GWHAAZE00000006	exon	73398040	73399780	+
GWHAAZE00000006	exon	73400147	73400430	+
GWHAAZE00000006	CDS	73398040	73399780	+
GWHAAZE00000006	CDS	73400147	73400430	+

Transcript Sequence
>GWHTAAZE022520 ATGGCCTCTTTTTCTTCTTTCTACCTCCTCTTCATCCTCTCAAAATTTATTTCCCTATCAGCCCAAATTCAAAACATTTCTTCCTTCTCCTCCTCAAACTCCCCATGGTTTCCCACCCAAACCCGAATCCTCCTCTCTCCTTCTTCCACCTTCGCCGCCGGGTTCCGACCCTTACCCGCTTCCCCAAACCTCTACACCTTCTCCATTTGGTACCATAACATCTCTATCAACGACACCGTTTGGTCCGCCAATCCAAACTCCCCGGTCAACCAGCTTGCCGCCCTAATCATCACCACCTCCGGCCAACTCCTCCTCAATACCTCTTCCGGTCAAAACCTGTGGCCCTCATCAACTCCAATTCGACAATCAAACTCCACTCAACTCACTCTCTCCGATTACGGTAACTTAATTTACGGCCAATGGGAAAGTTTTAATTACCCAACCAATACGATTTTACCCAATCAGAACATTAGTGGAATAACAATTTCCTCAAATAATGGGAACTACAAATTTGTCAATGCTTCGGAGCTTGTCTTCAATGCAACTGCTACCTATTACAGTAACGGTAATAATTTTCTCATGCTAGATGATACCGGGAAAATCGCGCAAGAAAGAGACGGAGCTTCGATCCTATCCGCAGATTTCGGTTTCCCCCGGATCCGACGGTTGACTCTCGACGACGATGGAAATCTCAAAATCTACAGCTTCAATCGGAACTCGACCGAGTCGACCCAGTGGAAAGTTGTTTGGCAAGCAGTGTACGAATTGTGCCAAATTTATGGTACGTGTGGTCCCAATTCTATATGTATAAATTATAATGGTAATTCCAACTCTACTTACTGTGTTTGTCCACCGGGGTTCCGGCGAGTTCCCGGCGCCGACAGTTTCACTTGCGTTCTGAAAACCCGGATTGTCGACCCGGGAAACACCAAGTTTCTGCGCTTGGACTATGTCAACTTTTCGGGCGGGTCAAACCAAACAAATACTTATGCCCGGAATTATACCATATGCGTGTCTCGCTGCTTGTCTAAACCGAATTGTCTCGGGTTTGGATTCAAATATGATGGAAACCAATACTGTGTACTCCAGTTGGATCAGTTGCTATATGGATACTGGTCTCCCGGTACTGAAACCACTATGTTTCTTCGGGTGGATAAATCCGAACCTGACAAATCTAACTTCACTGGCATGACCAATGTGCTCGAGACGGCATGCCCGGTTAGGGTCACCCTCCCTCTACCACCCAAAGAATCAAATTCCACGACCCGAAATATAGCTATAATTTGTACTCTTTTTGCTGCTGAACTCATTAGTGGAGTGTTTTTCTTTTGGGCTTTCTTGAAGAAATATGTTAAGTACAGGGACATGGCTCGAACCTTTGGCCTTGAATTCTCGCCCACAGGCGGGCCAAAACGGTTTAGCTATGCGGAGCTCAAAATTGCGACTAATGATTTCTCTAACATGATTGGAAGAGGCGGTTTTGGTGATGTTTATAAAGGCGAGTTGATGGATCATCGGGTGGTTGCTGTGAAATGTTTGAAAGATGTAACTGGCGGGGACGCTGAGTTTTGGGCAGAGGTCACCATTATTGCTCGAATGCACCATCTCAATTTGGTTCGGTTATGGGGATTTTGTGCTGAGAAGGGTCAAAGAATACTGGTTTATGAGTATGTGTCCAATGGTTCACTAGACAAGTTTTTATTTCACACGGATCGAGAAGGGTCAGAGGAGCAAGAAACAGGATCAAGAATGGAAAGTGAAGATTGGTATTTTCCTAGGTGGGCGTTCGATAAAGTTTTCAAGGAAATGAATGTGGAAGACATTTTGGATAGTCGGATCAAGCATTGTTACGATAGTCGAGTTCACTTTGATATGGTGAATCGGATGGTAAAAACAGCAATGTGGTGCCTTCAAGATCGACCGGAAATGAGGCCGTCAATGGGAAAAGTTGCTAAAATGTTAGAAGGAACCGTCGAGATTATAGAACCAACAAAACCCACAATATTTTTTCTAGGAGATGACTAA

Network for GWHGAAZE022490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	79	158	5.30E-11
PF00954.21	S_locus_glycop	220	289	1.80E-10
PF07714.18	PK_Tyr_Ser-Thr	485	572	3.80E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_SD-2b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.384
	SRR3591706	second leaf	5.937
	SRR3591707	mature leaf	10.165
	SRR3591708	Shoot apex	5.676
	SRR3591709	Stem	5.670
	SRR3591710	White floral bud	14.608
	SRR3591711	White flower	14.454
	SRR3591712	Green floral bud	5.735
	SRR3591713	Yellow flower	10.676
SRP173429	SRR8316895	Juvenile bud stage	8.837
	SRR8316896	Juvenile bud stage	7.575
	SRR8316897	Juvenile bud stage	3.100
	SRR8316894	Third green stage	2.661
	SRR8316900	Third green stage	5.975
	SRR8316901	Third green stage	6.799
	SRR8316898	Complete white stage	4.370
	SRR8316899	Complete white stage	8.973
	SRR8316903	Complete white stage	9.665
	SRR8316902	Silver flowering stage	7.911
	SRR8316904	Silver flowering stage	10.206
	SRR8316905	Silver flowering stage	4.666
	SRR8316906	Gold flowering stage	15.608
	SRR8316907	Gold flowering stage	14.132
	SRR8316908	Gold flowering stage	15.699
SRP132670	SRR6706286	Control	9.649
	SRR6706287	Light intensity 50%	10.240
	SRR6706288	Light intensity 20%	9.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.026
	CNS0095593	Slightly white alabastrum(diploid) 2	6.441
	CNS0095594	Slightly white alabastrum(diploid) 3	5.125
	CNS0095595	Whole white alabastrum(diploid) 2	4.106
	CNS0095596	Whole white alabastrum(diploid) 3	2.866
	CNS0095597	Whole white alabastrum(diploid) 4	4.605
	CNS0095598	Silvery flower (diploied) 1	11.062
	CNS0095599	Silvery flower (diploied) 2	10.537
	CNS0095600	Silvery flower (diploied) 3	16.008
	CNS0095601	Golden flower (diploid) 1	11.863
	CNS0095602	Golden flower (diploid) 2	19.194
	CNS0095603	Golden flower (diploid) 3	16.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.623
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.069
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.319
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.369
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.137
	CNS0095610	Silvery flower (diploied) 1	19.597
	CNS0095611	Silvery flower (diploied) 2	16.226
	CNS0095612	Silvery flower (diploied) 3	27.845
	CNS0095613	Golden flower (tetraploid) 1	10.664
	CNS0095614	Golden flower (tetraploid) 2	20.184
	CNS0095615	Golden flower (tetraploid) 3	27.054
CRA001975	CRR073297	Stem 1	9.974
	CRR073298	Stem 2	10.355
	CRR073299	Stem 3	9.423
	CRR073300	Leaf 1	15.496
	CRR073301	Leaf 2	17.278
	CRR073302	Leaf 3	8.942
	CRR073303	Juvenile bud 1	7.844
	CRR073304	Juvenile bud 2	10.275
	CRR073305	Juvenile bud 3	13.947
	CRR073306	Third green 1	20.165
	CRR073307	Third green 2	14.809
	CRR073308	Third green 3	22.221
	CRR073309	Second white 1	16.456
	CRR073310	Second white 2	17.830
	CRR073311	Second white 3	15.841
	CRR073312	Silver flowering 1	17.565
	CRR073313	Silver flowering 2	16.399
	CRR073314	Silver flowering 3	12.256
	CRR073315	Gold flowering 1	13.529
	CRR073316	Gold flowering 2	21.567
	CRR073317	Gold flowering 3	23.770
	CRR073318	Tawny withering 1	8.901
	CRR073319	Tawny withering 2	8.797
	CRR073320	Tawny withering 3	5.338