Gene detail

Detail information of GWHGAAZE022627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264047.1	8.4416E-121	PREDICTED: adenylate isopentenyltransferase-like [Nelumbo nucifera]
COG	YP_002315869.1	8E-28	tRNA delta(2)-isopentenylpyrophosphate transferase
Swissprot	tr\|Q5GHF7\|IPT_HUMLU	1E-108	Adenylate isopentenyltransferase
trEMBL	tr\|F6HEW3\|F6HEW3_VITVI	3E-117	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50908.1}
TAIR10	AT1G68460.1	2E-81	isopentenyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75634294	75636139	-
GWHAAZE00000006	mRNA	75634294	75636139	-
GWHAAZE00000006	exon	75635106	75636139	-
GWHAAZE00000006	exon	75634294	75634716	-
GWHAAZE00000006	CDS	75635106	75636139	-
GWHAAZE00000006	CDS	75634614	75634716	-
GWHAAZE00000006	three_prime_UTR	75634294	75634613	-

Transcript Sequence
>GWHTAAZE022657 ATGAGCATACACTCACTCTTTCATCGTAATCATCACCACCTATTCTCTCTCACCTTCCTCCCACCTCTCAAACTACCCCACCCAAAACCCATATGGCTTCACATGGCCGCCACCACAACCACCATCACCTGCAGCCACCACCTCAACAACCAAAATATCATCGTCATCATGGGCCCCACTGGCGCAGGCAAATCCCGCCTCTCCATTGACCTCGCCACCCAATTATACCTCCCTTCCGAAATCATCAACTCCGACAAAATCCAAGTCTACCAAGGCCTCGATATTACCACCAACAAAATCACAATGCCAGAGCGCCACGGCATCCCCCACCATCTCCTCGACTTCATCGACCCCACCCAACCAGAACTTACCCCGTCCGAGTACCGGGTAATCGGATCCTCCGCCATTTCCTACATCTCCTCCCGCTCCAGGTTACCCATCCTCGCAGGCGGCTCAAACTCCTTCATCTACGCCCTGCTCGCGGAACGGTTCGACCCTGATTCGGACATCTTCAGCGGGTCAGACCCGGTATGTGCGGAGCTCCGTTACAACTGTTGCTTTCTTTGGATGGACGTGTCTTTACCCGTTTTGTATCAGTATTTAGCTAAACGGGTCGATGAAATGCTTGACTCGGGGATGTTTAACGAGTTATCCGAGTTTTACGGATCGGAAGAGTTTGACTGGGTAAATGGTAACGGGTTGAAAAAGGCAATCGGAGTGCCCGAGTTCGAAAAGTATTTCAAAAGGTTCGGGTCGCGTAAGGATTTCACGAATACCGAGGAGGATTTGATGATGAGGGAAGTGGTGTATGAGGAGGCGGTTAGGGAGATCAAGGATAACACGTGTCAGCTAGCGAAGAGGCAGGTCGAGAAGATCCAACTGCTCAGGGAGGCTGGCTGGGACCTGCGCCGGATAAACGCGACGGAGGCGTTCAGGGCGGCGTTGGGGTCATCAGATTCCGGTGGGGTTTCGAGTATTTGGGAGAGAAAGGTGGTGGTACCAAGCATGAAGACTGTCAAGAGTTTCTTGGAGGAAAGTTCTTACCAAAATGGCTGGGAGGTTAGGAGTTGGTGCAAGCCTGGTGCAGCCAAGAGTGGAAGTGGCTCGACAAAAGGGCGATCAATTTTGGATCATTAAGCCGCCAACCACCCCCGCGCCTATGGTTTTGTGGGTGAATTGGTTTTTCGTTGGACGTACTGCGAACATATATACATATGTAGCTGAAGCTGAAGCTGCATGTGAAGAAATATATTTTTCCAGCTTGCAAATTTCCAGAAGTAGTTTATATTAATTGAATGGAAACCTGAAGATATGATGAGGCGTTCAACGAAACGAATTGAAGAGAAGTCTTCATATAACAAAGTTGGTTATTCAAATCATATAAATGGGTTTTTTTTTTGTTTGTCATTATTTAACCACTTGGAATATCAAGTACGTAATCTGATGCAGCTTGTTAA

Network for GWHGAAZE022627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01715.18	IPPT	88	163	2.10E-17
PF01715.18	IPPT	181	289	3.20E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10760	IPT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.060
	SRR3591706	second leaf	0.308
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.887
	SRR3591709	Stem	0.384
	SRR3591710	White floral bud	8.594
	SRR3591711	White flower	16.475
	SRR3591712	Green floral bud	7.798
	SRR3591713	Yellow flower	3.124
SRP173429	SRR8316895	Juvenile bud stage	2.238
	SRR8316896	Juvenile bud stage	13.083
	SRR8316897	Juvenile bud stage	4.727
	SRR8316894	Third green stage	4.638
	SRR8316900	Third green stage	9.072
	SRR8316901	Third green stage	14.733
	SRR8316898	Complete white stage	3.042
	SRR8316899	Complete white stage	0.368
	SRR8316903	Complete white stage	6.388
	SRR8316902	Silver flowering stage	1.949
	SRR8316904	Silver flowering stage	2.492
	SRR8316905	Silver flowering stage	0.935
	SRR8316906	Gold flowering stage	1.764
	SRR8316907	Gold flowering stage	1.910
	SRR8316908	Gold flowering stage	2.359
SRP132670	SRR6706286	Control	4.383
	SRR6706287	Light intensity 50%	5.096
	SRR6706288	Light intensity 20%	3.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.788
	CNS0095593	Slightly white alabastrum(diploid) 2	10.865
	CNS0095594	Slightly white alabastrum(diploid) 3	22.750
	CNS0095595	Whole white alabastrum(diploid) 2	16.019
	CNS0095596	Whole white alabastrum(diploid) 3	19.504
	CNS0095597	Whole white alabastrum(diploid) 4	12.146
	CNS0095598	Silvery flower (diploied) 1	0.197
	CNS0095599	Silvery flower (diploied) 2	0.599
	CNS0095600	Silvery flower (diploied) 3	2.144
	CNS0095601	Golden flower (diploid) 1	0.537
	CNS0095602	Golden flower (diploid) 2	0.548
	CNS0095603	Golden flower (diploid) 3	0.742
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.666
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.143
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.741
	CNS0095610	Silvery flower (diploied) 1	1.699
	CNS0095611	Silvery flower (diploied) 2	1.880
	CNS0095612	Silvery flower (diploied) 3	3.485
	CNS0095613	Golden flower (tetraploid) 1	0.599
	CNS0095614	Golden flower (tetraploid) 2	4.443
	CNS0095615	Golden flower (tetraploid) 3	0.449
CRA001975	CRR073297	Stem 1	5.016
	CRR073298	Stem 2	6.809
	CRR073299	Stem 3	3.413
	CRR073300	Leaf 1	3.993
	CRR073301	Leaf 2	7.501
	CRR073302	Leaf 3	5.409
	CRR073303	Juvenile bud 1	0.935
	CRR073304	Juvenile bud 2	3.496
	CRR073305	Juvenile bud 3	0.473
	CRR073306	Third green 1	6.964
	CRR073307	Third green 2	4.770
	CRR073308	Third green 3	7.602
	CRR073309	Second white 1	0.687
	CRR073310	Second white 2	1.093
	CRR073311	Second white 3	1.238
	CRR073312	Silver flowering 1	0.794
	CRR073313	Silver flowering 2	0.208
	CRR073314	Silver flowering 3	0.877
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.658
	CRR073319	Tawny withering 2	0.458
	CRR073320	Tawny withering 3	1.593