LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE022627

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE022627

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE022627AT1G68460.1isopentenyltransferase 11positive
GWHGAAZE030013AT1G75110.1Nucleotide-diphospho-sugar transferase family protein0.91positive
GWHGAAZE026548AT5G05480.1Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein0.9positive
GWHGAAZE015054ATCG00020.1photosystem II reaction center protein A0.89positive
GWHGAAZE012493AT1G70670.1Caleosin-related family protein0.89positive
GWHGAAZE025974AT4G13340.1Leucine-rich repeat (LRR) family protein0.89positive
GWHGAAZE025026AT3G60580.1C2H2-like zinc finger protein0.88positive
GWHGAAZE003634AT5G24130.1polypyrimidine tract-binding-like protein;(source:Araport11)0.88positive
GWHGAAZE024071AT1G21750.1PDI-like 1-10.88positive
GWHGAAZE011494AT4G13510.1ammonium transporter 1;10.88positive
GWHGAAZE029092AT3G45070.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.87positive
GWHGAAZE003867AT2G38910.1calcium-dependent protein kinase 200.87positive
GWHGAAZE017620AT5G13330.1related to AP2 6l0.87positive
GWHGAAZE022991AT1G13180.1Actin-like ATPase superfamily protein0.87positive
GWHGAAZE005554AT3G25020.1receptor like protein 420.87positive
GWHGAAZE024632AT5G57810.1tetraspanin150.87positive
GWHGAAZE031258AT3G60460.1myb-like HTH transcriptional regulator family protein0.87positive
GWHGAAZE012545AT1G15020.2quiescin-sulfhydryl oxidase 10.86positive
GWHGAAZE029473AT1G57600.1MBOAT (membrane bound O-acyl transferase) family protein0.86positive
GWHGAAZE013119----0.86positive
GWHGAAZE011944AT5G26250.1Major facilitator superfamily protein0.86positive
GWHGAAZE029407AT3G18570.1Oleosin family protein0.86positive
GWHGAAZE019201AT2G47470.1thioredoxin family protein0.86positive
GWHGAAZE016344AT5G64410.1oligopeptide transporter 40.86positive
GWHGAAZE013679AT1G24480.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.86positive
GWHGAAZE029620AT4G24330.1Protein of unknown function (DUF1682)0.86positive
GWHGAAZE030543AT5G62850.1Nodulin MtN3 family protein0.86positive


Expression profiling, GSEA and motif analysis