Gene detail

Detail information of GWHGAAZE023041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP26783.1	2.9138E-154	hypothetical protein JCGZ_17941 [Jatropha curcas]
COG	YP_004616201.1	2E-27	proteasome endopeptidase complex subunit beta
Swissprot	tr\|O24361\|PSB5_SPIOL	4E-148	Proteasome subunit beta type-5 (Precursor)
trEMBL	tr\|A0A067JVG8\|A0A067JVG8_JATCU	1E-154	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT3G26340.1	1E-114	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82431544	82436518	+
GWHAAZE00000006	mRNA	82431544	82436518	+
GWHAAZE00000006	exon	82431544	82431666	+
GWHAAZE00000006	exon	82431778	82431907	+
GWHAAZE00000006	exon	82432107	82432241	+
GWHAAZE00000006	exon	82433196	82433302	+
GWHAAZE00000006	exon	82434794	82434928	+
GWHAAZE00000006	exon	82435024	82435127	+
GWHAAZE00000006	exon	82435800	82435900	+
GWHAAZE00000006	exon	82435988	82436518	+
GWHAAZE00000006	CDS	82431544	82431666	+
GWHAAZE00000006	CDS	82431778	82431907	+
GWHAAZE00000006	CDS	82432107	82432241	+
GWHAAZE00000006	CDS	82433196	82433302	+
GWHAAZE00000006	CDS	82434794	82434928	+
GWHAAZE00000006	CDS	82435024	82435127	+
GWHAAZE00000006	CDS	82435800	82435900	+
GWHAAZE00000006	CDS	82435988	82436115	+
GWHAAZE00000006	three_prime_UTR	82436116	82436518	+

Transcript Sequence
>GWHTAAZE023071 GTAATAACAATAATCATGAGGATTGACTTTAGTGGACTGGAATCAACTGCTGCACCATGGGCAGATGAGTTGTTTAATGGTTTTTCAACTCCTCCTTCATTTTCAATTCCTGATACTATTGATTTTGATGGTTTTCAGAAAAAAACAGTTCAGATGGTGAAGCCGGCAAAGGGAACAACTACTTTGGCTTTTATTTTTAAGCACGGTGTGATTGTTGCAGCGGATTCTCGTGCTAGCATGGGAGGATATATCTTACAAACCGTAGCCATGGACCAAGTTTTATTTGTTGTGAAGAATTTTGCATCTGACCTTGATATGGGATTGAAGTTGTCAAAAGTGTGCCAAGGCACGCTCCTCAGCCCAGGGCAGAGAGATGCACTTCGAAAAGCATCACAATCTGTGAGAAAAATCATTGAAATCAATCCCTACATGCTTGGCACAATGGCTGGTGGAGCTGCTGACTGCCAGTTCTGGCTCAGAAATCTGGGAATTAAGTGCCGTTCACATGAATTAGCCAACAAGAGAAGAATCTCAGTTACTGGAGCTTCCAAGTTGCTAGCAAACACTCTATATTCTTACCGTGGAATGGGTTTGTCTGTCGGAACGATGGTTGCTGGTTGGGATGAAAAGGGCCCTCGCCTATATTATGTGGATAGTGAAGGGGGGCGGTTAGAAGGAACAAAATTTTCTGTTGGATCTGGTTCACCTTATGCTTATGGTGTCTTGGATAGCGGATACGATTATGATATGACAATCAAAGAAGCTGCCGCGTTGGCAAGAGGTGCCATTTATCATGCAACATTCCGTGATGCGGCCAGTGGTGGTGTTGCTAGCGTTTATTATGTGGGACCGAATGGATGGAAGAAGCTATCTGGAGATGATGTTGGAGAACTTCACTATAAGTACTTTCCTGTTGAACCGGCTCCAGTTGAAGAGGAGATGATTGATGTCCCAGTGGCCTGATGACTAGGATCCCCTTTTTCTTCTTACGTACGCCTAATATACTTTGTCTTGGGGCAATTCTTAGCTTAGGCCCTTTGTTTCTTACAGAAAGAAGAAAACAAAAATCTTCTAGGCCCGGTTTCTAACTTAGCCTTCTGCTGGTTTGGGTAGTATTCATTGCGTGATATATATTGATATTATGTATTCACAAACTATTTTTCTGTGGGTGCTGGACCTTTTATGAATTCATTGCAATAGGTGAACACAAGTTATGAGTCATGGTGCACCAAGCAACTTCGCTTGATAGCTAAAGAATAGCATTTCGCACAAATCTGTGTGGGGTTAAATGGGCACACTATTGATGTTTACATTTTCTATTAATTGTACTAGTGATAATAATGCATTATGGTTGGGTGGCAATTAA

Network for GWHGAAZE023041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	131	282	3.50E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02737	PSMB5	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.025
	SRR3591706	second leaf	18.852
	SRR3591707	mature leaf	7.178
	SRR3591708	Shoot apex	27.098
	SRR3591709	Stem	26.454
	SRR3591710	White floral bud	31.549
	SRR3591711	White flower	102.973
	SRR3591712	Green floral bud	38.762
	SRR3591713	Yellow flower	82.034
SRP173429	SRR8316895	Juvenile bud stage	24.396
	SRR8316896	Juvenile bud stage	44.954
	SRR8316897	Juvenile bud stage	18.573
	SRR8316894	Third green stage	14.314
	SRR8316900	Third green stage	61.575
	SRR8316901	Third green stage	57.210
	SRR8316898	Complete white stage	14.934
	SRR8316899	Complete white stage	35.119
	SRR8316903	Complete white stage	18.540
	SRR8316902	Silver flowering stage	34.551
	SRR8316904	Silver flowering stage	35.975
	SRR8316905	Silver flowering stage	16.800
	SRR8316906	Gold flowering stage	133.796
	SRR8316907	Gold flowering stage	110.081
	SRR8316908	Gold flowering stage	111.695
SRP132670	SRR6706286	Control	43.487
	SRR6706287	Light intensity 50%	43.395
	SRR6706288	Light intensity 20%	49.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.046
	CNS0095593	Slightly white alabastrum(diploid) 2	52.449
	CNS0095594	Slightly white alabastrum(diploid) 3	52.224
	CNS0095595	Whole white alabastrum(diploid) 2	49.560
	CNS0095596	Whole white alabastrum(diploid) 3	49.783
	CNS0095597	Whole white alabastrum(diploid) 4	37.193
	CNS0095598	Silvery flower (diploied) 1	24.211
	CNS0095599	Silvery flower (diploied) 2	30.263
	CNS0095600	Silvery flower (diploied) 3	39.476
	CNS0095601	Golden flower (diploid) 1	25.610
	CNS0095602	Golden flower (diploid) 2	31.670
	CNS0095603	Golden flower (diploid) 3	31.868
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.785
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.054
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.427
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.412
	CNS0095610	Silvery flower (diploied) 1	61.821
	CNS0095611	Silvery flower (diploied) 2	43.636
	CNS0095612	Silvery flower (diploied) 3	37.488
	CNS0095613	Golden flower (tetraploid) 1	79.055
	CNS0095614	Golden flower (tetraploid) 2	57.596
	CNS0095615	Golden flower (tetraploid) 3	91.280
CRA001975	CRR073297	Stem 1	36.179
	CRR073298	Stem 2	37.917
	CRR073299	Stem 3	41.072
	CRR073300	Leaf 1	55.055
	CRR073301	Leaf 2	52.406
	CRR073302	Leaf 3	59.592
	CRR073303	Juvenile bud 1	64.467
	CRR073304	Juvenile bud 2	54.685
	CRR073305	Juvenile bud 3	48.696
	CRR073306	Third green 1	19.316
	CRR073307	Third green 2	13.461
	CRR073308	Third green 3	17.474
	CRR073309	Second white 1	67.949
	CRR073310	Second white 2	77.366
	CRR073311	Second white 3	59.149
	CRR073312	Silver flowering 1	26.658
	CRR073313	Silver flowering 2	31.573
	CRR073314	Silver flowering 3	17.427
	CRR073315	Gold flowering 1	7.008
	CRR073316	Gold flowering 2	7.244
	CRR073317	Gold flowering 3	6.249
	CRR073318	Tawny withering 1	25.300
	CRR073319	Tawny withering 2	27.401
	CRR073320	Tawny withering 3	24.649