Gene detail

Detail information of GWHGAAZE024156

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237760.1	1.4223E-143	PREDICTED: peroxidase 43-like isoform X2 [Solanum lycopersicum]
Swissprot	tr\|Q9SZH2\|PER43_ARATH	7E-133	Peroxidase 43 (Precursor)
trEMBL	tr\|K4BT60\|K4BT60_SOLLC	3E-139	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g064690.2.1}
TAIR10	AT4G25980.1	1E-107	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	36359549	36365410	-
GWHAAZE00000007	mRNA	36359549	36365410	-
GWHAAZE00000007	exon	36359549	36359970	-
GWHAAZE00000007	exon	36361425	36361590	-
GWHAAZE00000007	exon	36364087	36364269	-
GWHAAZE00000007	exon	36365201	36365410	-
GWHAAZE00000007	CDS	36365201	36365410	-
GWHAAZE00000007	CDS	36364087	36364269	-
GWHAAZE00000007	CDS	36361425	36361590	-
GWHAAZE00000007	CDS	36359549	36359970	-

Transcript Sequence
>GWHTAAZE024190 ATGGGGATATTGAATCATGTGGTTTTGGGTGTGATGGTAATGTTGTGTAATGGGATTGGGGTAAAAGGAGAACTGAATGTTGGGTTTTACTCCCAAACATGTCCTAATGCAGAGTCCATAGTGATGTCTGTTGTTAAAGATGCCACTGCCAGTAACTCCAGAATCCCTCCTATTCTTCTTCGCCTCCATTTCCATGACTGCTTTGTTGAGGGGTGTGATGGGTCAATTTTGATTGACGATGGTGAAAATATAGAAAAAGGTGCATTTGGACATGAAGGCGTTAGAGGGTTTGATGAGATAGAGTTGGCCAAAACAAAGTTGGAAGTCGAATGTCCAGGGGTTGTTTCTTGCGCTGATATTGTTGCCATGGCGGCCAGAGATGCTGTTTTCTTGAGTGGTGGGCCACATTATCAAGTTGAGACTGGCCGGAGAGATGGGCGGGTTTCCAAAGCGTCACTCGCCGCCGACATGCCGGACGTGAATGACTCCATTGATACTCTCAAGTCCAAGTTCATGCACAAGGGTCTTCCCCCCAAAGATCTTGTCCTTCTTACTGCCGGTGCGCACACAATTGGTACAACAGCATGCTTCTTCATGCCGGTGCGACTCTACAACTTCACTGGAAAAGACGACACAGATCCGTCGATCAACCCTCAATTGCTCCCTAAACTAAAAAGAAGATGTCCAATTAATGGCGATGTTAATGTCCGAATACCTCTTGACCCCATAACCAGTGAAGTGTTAGACGATCAAGTTATTCGCAACATTAAGAACGGATTTGCAGTAATAGCATCCGATGCTAGGCTTTACGATGATGATGCCACCAAGGAAACAATTGAGTCATATCTTAAATTCGCGAGTCAATTGGATGGATCGTTCTTTGGAACTGTTTTTCCTGAAGCAATGGTAAGGATGGGTCAGATTGGGGTGAAGACTGGGTCTAATGGAGAGATTAGGCGAGTTTGTCACTCATTTAATTGA

Network for GWHGAAZE024156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	43	283	3.30E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.104
	SRR3591711	White flower	0.072
	SRR3591712	Green floral bud	0.196
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.131
	SRR8316896	Juvenile bud stage	0.184
	SRR8316897	Juvenile bud stage	0.125
	SRR8316894	Third green stage	0.151
	SRR8316900	Third green stage	0.374
	SRR8316901	Third green stage	0.495
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.161
	SRR6706287	Light intensity 50%	0.135
	SRR6706288	Light intensity 20%	0.169
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.553
	CNS0095593	Slightly white alabastrum(diploid) 2	0.125
	CNS0095594	Slightly white alabastrum(diploid) 3	0.414
	CNS0095595	Whole white alabastrum(diploid) 2	0.977
	CNS0095596	Whole white alabastrum(diploid) 3	0.527
	CNS0095597	Whole white alabastrum(diploid) 4	0.748
	CNS0095598	Silvery flower (diploied) 1	0.129
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.068
	CNS0095602	Golden flower (diploid) 2	0.026
	CNS0095603	Golden flower (diploid) 3	0.005
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.318
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.013
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.116
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.667
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.171
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.213
	CRR073298	Stem 2	0.079
	CRR073299	Stem 3	0.650
	CRR073300	Leaf 1	0.486
	CRR073301	Leaf 2	0.399
	CRR073302	Leaf 3	0.157
	CRR073303	Juvenile bud 1	0.132
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.155
	CRR073309	Second white 1	0.013
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.133
	CRR073318	Tawny withering 1	0.136
	CRR073319	Tawny withering 2	0.018
	CRR073320	Tawny withering 3	0.003