Gene detail

Detail information of GWHGAAZE024918

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABR13310.1	5.9331E-142	putative NAD dependent malic enzyme [Prunus dulcis]
COG	YP_002761901.1	2E-57	malic enzyme
Swissprot	tr\|P37225\|MAON_SOLTU	1E-140	NAD-dependent malic enzyme 59 kDa isoform, mitochondrial (Precursor)
trEMBL	tr\|A7Y7M4\|A7Y7M4_PRUDU	2E-142	Putative NAD dependent malic enzyme {ECO:0000313\|EMBL:ABR13310.1} (Fragment)
TAIR10	AT4G00570.1	3E-94	NAD-dependent malic enzyme 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51702780	51708304	-
GWHAAZE00000007	mRNA	51702780	51708304	-
GWHAAZE00000007	exon	51708173	51708304	-
GWHAAZE00000007	exon	51705483	51705579	-
GWHAAZE00000007	exon	51703722	51703840	-
GWHAAZE00000007	exon	51703467	51703634	-
GWHAAZE00000007	exon	51702780	51702935	-
GWHAAZE00000007	CDS	51708173	51708304	-
GWHAAZE00000007	CDS	51705483	51705579	-
GWHAAZE00000007	CDS	51703722	51703840	-
GWHAAZE00000007	CDS	51703467	51703634	-
GWHAAZE00000007	CDS	51702780	51702935	-

Transcript Sequence
>GWHTAAZE024952 ATGTGGAAGCTCATCGCTCGATCCGCGGCGTCGAATCTCCGCCGGTCGCGGTTGTTGTCCACGGCGATTCCAGGTCCGAGTATTGTTCACAAGCGTGGTGCTGATATTCTTCACGATCCGTGGTTTAACAAGGACACTGGCTTCCCTTTGACAGAAAGAGACCGACTTGGGCTTCGAGGTCTCCTCCCACCTCGTGTGATATCCTTTGAGCAGCAGTATGCTCGTTTCATGGAATCATATCGATCGCTTGAACAAAATACTCGAGGTCAACCAGAAGGTGTTGTATCTTTAGCAAAATGGAGGATATTGAATCGATTGCATGACAGGAACGAGACATTATATTACCGAGTACTCATTGATAACATTAAAAATTTTGCTCCTGTAATATACACTCCTACGGTTGGATTGGTTTGTCAAAACTATTCGGGTTTGTTTAGACGCCCACGGGGAATGTACTTCAGTGCAAAAGATAAGGGAGAAATGATGTCTATGATCTATAATTGGCCCTCTCAACAGGTGGACATGATTGTGATCACAGATGGCAGTCGTATACTTGGCTTAGGTGATCTTGGAGTTCAGGGAATTGGTATACCAATTGGAAAACTCGACATGTATGTTGCTGCTGCTGGTATCAATCCACAAAGAGTATGCACTATCACCTTTTTCTATTAG

Network for GWHGAAZE024918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00390.20	malic	107	220	1.60E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00028	E1.1.1.39	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004471	molecular_function	malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004470	molecular_function	malic enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	122.285
	SRR3591706	second leaf	82.775
	SRR3591707	mature leaf	59.324
	SRR3591708	Shoot apex	68.886
	SRR3591709	Stem	62.043
	SRR3591710	White floral bud	43.327
	SRR3591711	White flower	24.792
	SRR3591712	Green floral bud	77.682
	SRR3591713	Yellow flower	11.810
SRP173429	SRR8316895	Juvenile bud stage	46.787
	SRR8316896	Juvenile bud stage	60.976
	SRR8316897	Juvenile bud stage	34.326
	SRR8316894	Third green stage	33.832
	SRR8316900	Third green stage	87.761
	SRR8316901	Third green stage	67.368
	SRR8316898	Complete white stage	20.339
	SRR8316899	Complete white stage	83.938
	SRR8316903	Complete white stage	32.811
	SRR8316902	Silver flowering stage	8.062
	SRR8316904	Silver flowering stage	12.416
	SRR8316905	Silver flowering stage	5.876
	SRR8316906	Gold flowering stage	15.322
	SRR8316907	Gold flowering stage	14.589
	SRR8316908	Gold flowering stage	25.247
SRP132670	SRR6706286	Control	74.839
	SRR6706287	Light intensity 50%	80.000
	SRR6706288	Light intensity 20%	87.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.011
	CNS0095593	Slightly white alabastrum(diploid) 2	18.082
	CNS0095594	Slightly white alabastrum(diploid) 3	24.037
	CNS0095595	Whole white alabastrum(diploid) 2	18.114
	CNS0095596	Whole white alabastrum(diploid) 3	22.507
	CNS0095597	Whole white alabastrum(diploid) 4	18.817
	CNS0095598	Silvery flower (diploied) 1	38.123
	CNS0095599	Silvery flower (diploied) 2	35.724
	CNS0095600	Silvery flower (diploied) 3	27.174
	CNS0095601	Golden flower (diploid) 1	30.173
	CNS0095602	Golden flower (diploid) 2	28.388
	CNS0095603	Golden flower (diploid) 3	26.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.258
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.206
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.974
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.128
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.319
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.528
	CNS0095610	Silvery flower (diploied) 1	26.786
	CNS0095611	Silvery flower (diploied) 2	24.327
	CNS0095612	Silvery flower (diploied) 3	16.543
	CNS0095613	Golden flower (tetraploid) 1	8.672
	CNS0095614	Golden flower (tetraploid) 2	17.442
	CNS0095615	Golden flower (tetraploid) 3	5.029
CRA001975	CRR073297	Stem 1	64.848
	CRR073298	Stem 2	58.982
	CRR073299	Stem 3	61.912
	CRR073300	Leaf 1	73.731
	CRR073301	Leaf 2	62.993
	CRR073302	Leaf 3	74.395
	CRR073303	Juvenile bud 1	60.809
	CRR073304	Juvenile bud 2	53.915
	CRR073305	Juvenile bud 3	67.282
	CRR073306	Third green 1	16.816
	CRR073307	Third green 2	11.818
	CRR073308	Third green 3	11.714
	CRR073309	Second white 1	5.480
	CRR073310	Second white 2	5.608
	CRR073311	Second white 3	3.960
	CRR073312	Silver flowering 1	3.756
	CRR073313	Silver flowering 2	4.431
	CRR073314	Silver flowering 3	4.315
	CRR073315	Gold flowering 1	34.826
	CRR073316	Gold flowering 2	53.804
	CRR073317	Gold flowering 3	37.684
	CRR073318	Tawny withering 1	28.173
	CRR073319	Tawny withering 2	16.962
	CRR073320	Tawny withering 3	29.019