LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE024918

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE024918

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE024918AT4G00570.1NAD-dependent malic enzyme 21positive
GWHGAAZE030858AT2G32070.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein-0.65negative
GWHGAAZE025552AT1G80160.2Lactoylglutathione lyase / glyoxalase I family protein-0.65negative
GWHGAAZE026184AT5G24870.2RING/U-box superfamily protein-0.62negative
GWHGAAZE025082AT4G09320.1Nucleoside diphosphate kinase family protein-0.62negative
GWHGAAZE000650AT5G05580.1fatty acid desaturase 8-0.62negative
GWHGAAZE008845AT2G27510.1ferredoxin 3-0.61negative
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)-0.61negative
GWHGAAZE017552AT1G15860.2Domain of unknown function (DUF298)-0.61negative
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.61negative
GWHGAAZE000665AT5G05580.1fatty acid desaturase 8-0.61negative
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein-0.61negative
GWHGAAZE005860AT1G01050.1pyrophosphorylase 1-0.6negative
GWHGAAZE002724AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.6negative
GWHGAAZE016177AT5G09360.1laccase 14-0.59negative
GWHGAAZE015039AT4G35510.1PHD finger-like protein;(source:Araport11)-0.59negative
GWHGAAZE008897AT2G27510.1ferredoxin 3-0.59negative
GWHGAAZE026945AT1G11740.1ankyrin repeat family protein-0.59negative
GWHGAAZE006212AT4G22590.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.59negative
GWHGAAZE005521AT5G02230.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.59negative
GWHGAAZE029487AT2G02370.2SNARE associated Golgi protein family-0.59negative
GWHGAAZE015882AT1G21920.1Histone H3 K4-specific methyltransferase SET7/9 family protein-0.59negative
GWHGAAZE015202AT5G65380.1MATE efflux family protein-0.58negative
GWHGAAZE008929AT2G36090.1F-box family protein-0.58negative
GWHGAAZE015925AT1G01720.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.58negative
GWHGAAZE033819AT1G09310.1Protein of unknown function, DUF538-0.58negative
GWHGAAZE010911AT5G39530.1Protein of unknown function (DUF1997)-0.58negative
GWHGAAZE023207AT3G18990.1AP2/B3-like transcriptional factor family protein-0.58negative
GWHGAAZE012173AT4G15563.1F-box-like protein;(source:Araport11)-0.58negative
GWHGAAZE026760AT2G30860.1glutathione S-transferase PHI 9-0.58negative
GWHGAAZE014229AT5G64460.8Phosphoglycerate mutase family protein-0.58negative
GWHGAAZE006328AT3G03000.1EF hand calcium-binding protein family-0.58negative
GWHGAAZE033316AT3G27330.1zinc finger (C3HC4-type RING finger) family protein-0.58negative
GWHGAAZE009115AT2G29380.1highly ABA-induced PP2C gene 3-0.58negative
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.58negative
GWHGAAZE008554AT2G26930.14-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase-0.58negative
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)-0.57negative
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein-0.57negative
GWHGAAZE028398AT2G26040.1PYR1-like 2-0.57negative
GWHGAAZE000642AT2G30040.1mitogen-activated protein kinase kinase kinase 14-0.57negative
GWHGAAZE026827AT1G06290.1acyl-CoA oxidase 3-0.57negative
GWHGAAZE008201AT4G12070.1hypothetical protein;(source:Araport11)-0.57negative
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 1-0.57negative
GWHGAAZE020868AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.57negative
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.57negative
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein-0.57negative
GWHGAAZE013965AT1G19640.1jasmonic acid carboxyl methyltransferase-0.57negative
GWHGAAZE009561AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 4-0.57negative
GWHGAAZE005320AT5G01830.1ARM repeat superfamily protein-0.56negative
GWHGAAZE032753AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.56negative
GWHGAAZE016368AT1G10070.2branched-chain amino acid transaminase 2-0.56negative
GWHGAAZE000206AT3G63010.1alpha/beta-Hydrolases superfamily protein-0.56negative
GWHGAAZE008931AT3G44326.1F-box family protein-0.56negative
GWHGAAZE023997AT4G08180.1OSBP(oxysterol binding protein)-related protein 1C-0.56negative
GWHGAAZE025068AT1G02090.1Proteasome component (PCI) domain protein-0.56negative
GWHGAAZE001397AT3G12630.1A20/AN1-like zinc finger family protein-0.56negative
GWHGAAZE022613AT2G01260.1Protein of unknown function (DUF789)-0.56negative
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein-0.56negative
GWHGAAZE033552AT5G57360.1Galactose oxidase/kelch repeat superfamily protein-0.56negative
GWHGAAZE018844AT1G22930.1T-complex protein 11-0.56negative
GWHGAAZE028420AT4G32940.1gamma vacuolar processing enzyme-0.56negative
GWHGAAZE015050AT5G65980.1Auxin efflux carrier family protein-0.56negative
GWHGAAZE009574AT3G25110.1fatA acyl-ACP thioesterase-0.56negative
GWHGAAZE007837AT5G64290.1dicarboxylate transport 2.1-0.56negative
GWHGAAZE022707AT2G37240.1Thioredoxin superfamily protein-0.56negative
GWHGAAZE008921AT2G27310.1F-box family protein-0.56negative


Expression profiling, GSEA and motif analysis