Gene detail

Detail information of GWHGAAZE025884

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004141038.1	5.4783E-110	PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Cucumis sativus]
Swissprot	tr\|Q9SZE4\|VP322_ARATH	2E-95	Vacuolar protein sorting-associated protein 32 homolog 2
trEMBL	tr\|A0A0A0LHT5\|A0A0A0LHT5_CUCSA	2E-110	Uncharacterized protein {ECO:0000313\|EMBL:KGN60554.1}
TAIR10	AT4G29160.2	4E-57	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69545457	69548096	+
GWHAAZE00000007	mRNA	69545457	69548096	+
GWHAAZE00000007	exon	69545457	69545556	+
GWHAAZE00000007	exon	69546185	69546270	+
GWHAAZE00000007	exon	69546394	69546485	+
GWHAAZE00000007	exon	69547713	69547827	+
GWHAAZE00000007	exon	69547905	69548096	+
GWHAAZE00000007	CDS	69545457	69545556	+
GWHAAZE00000007	CDS	69546185	69546270	+
GWHAAZE00000007	CDS	69546394	69546485	+
GWHAAZE00000007	CDS	69547713	69547827	+
GWHAAZE00000007	CDS	69547905	69548096	+

Transcript Sequence
>GWHTAAZE025918 ACACTTGAAATGCTTGAGAAAAAGGAGAAAGTTCTTGTGAAGAAGGCTGCAGCAGAAGTTGAAAAGGCCAAGGAATTTACCAGACAGAAAAATAAAAGGGCGGCAATACAATGCTTAAAGAGGAAGAGACTTTATGAGGGGCAAGTCGAACAACTTGGGAACTTCCAGTTGCGCATTCATGATCAGATGATAATGCTAGAAGGTGCAAAAGCGACCACAGAGACCGTTGATGCTTTGAGAACTGGAGCAGCTACAATGAAAGCCATGCAAAAGGCGACGAATATTGATGATGTGGACAAAACGATGGACGAGATCAACGAGCAAACGGAGAATATGAAGCAAATTCAAGAAGCATTGTCAGCACCAATCGGTGCAGCAGCTGATTTTGATGAAGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAGGAGCCGAGTTGGAGGAACAGCTTCTCCAGCCTGCCACGATTGCCCCTGCAGCTCCAGTGGTTGCACCGGGTGGCAGGCAACAAGCGCGTCCTGCTCCTCAGAAGAAGACATCTGAGGAAGACGAACTTGCTGCGTTGCAAGCAGAAATGGCGCTATAG

Network for GWHGAAZE025884

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	3	163	2.50E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12194	CHMP4, SNF7, VPS32	Endocytosis	map04144
K12194	CHMP4, SNF7, VPS32	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.094
	SRR3591706	second leaf	19.133
	SRR3591707	mature leaf	18.422
	SRR3591708	Shoot apex	23.044
	SRR3591709	Stem	51.332
	SRR3591710	White floral bud	75.443
	SRR3591711	White flower	94.916
	SRR3591712	Green floral bud	40.694
	SRR3591713	Yellow flower	90.913
SRP173429	SRR8316895	Juvenile bud stage	20.378
	SRR8316896	Juvenile bud stage	32.805
	SRR8316897	Juvenile bud stage	17.134
	SRR8316894	Third green stage	14.024
	SRR8316900	Third green stage	46.377
	SRR8316901	Third green stage	46.950
	SRR8316898	Complete white stage	44.551
	SRR8316899	Complete white stage	56.758
	SRR8316903	Complete white stage	67.887
	SRR8316902	Silver flowering stage	64.438
	SRR8316904	Silver flowering stage	64.731
	SRR8316905	Silver flowering stage	41.585
	SRR8316906	Gold flowering stage	136.289
	SRR8316907	Gold flowering stage	121.641
	SRR8316908	Gold flowering stage	126.177
SRP132670	SRR6706286	Control	36.090
	SRR6706287	Light intensity 50%	40.787
	SRR6706288	Light intensity 20%	40.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.292
	CNS0095593	Slightly white alabastrum(diploid) 2	23.696
	CNS0095594	Slightly white alabastrum(diploid) 3	26.158
	CNS0095595	Whole white alabastrum(diploid) 2	28.942
	CNS0095596	Whole white alabastrum(diploid) 3	34.195
	CNS0095597	Whole white alabastrum(diploid) 4	30.814
	CNS0095598	Silvery flower (diploied) 1	38.231
	CNS0095599	Silvery flower (diploied) 2	32.036
	CNS0095600	Silvery flower (diploied) 3	63.996
	CNS0095601	Golden flower (diploid) 1	37.826
	CNS0095602	Golden flower (diploid) 2	52.979
	CNS0095603	Golden flower (diploid) 3	51.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.615
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.837
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.595
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.301
	CNS0095610	Silvery flower (diploied) 1	69.592
	CNS0095611	Silvery flower (diploied) 2	55.735
	CNS0095612	Silvery flower (diploied) 3	82.891
	CNS0095613	Golden flower (tetraploid) 1	89.082
	CNS0095614	Golden flower (tetraploid) 2	57.307
	CNS0095615	Golden flower (tetraploid) 3	83.547
CRA001975	CRR073297	Stem 1	24.101
	CRR073298	Stem 2	26.839
	CRR073299	Stem 3	23.544
	CRR073300	Leaf 1	30.346
	CRR073301	Leaf 2	32.976
	CRR073302	Leaf 3	21.471
	CRR073303	Juvenile bud 1	20.727
	CRR073304	Juvenile bud 2	28.340
	CRR073305	Juvenile bud 3	15.812
	CRR073306	Third green 1	107.470
	CRR073307	Third green 2	96.024
	CRR073308	Third green 3	87.266
	CRR073309	Second white 1	33.823
	CRR073310	Second white 2	80.872
	CRR073311	Second white 3	58.946
	CRR073312	Silver flowering 1	32.536
	CRR073313	Silver flowering 2	25.067
	CRR073314	Silver flowering 3	34.762
	CRR073315	Gold flowering 1	15.447
	CRR073316	Gold flowering 2	22.048
	CRR073317	Gold flowering 3	9.854
	CRR073318	Tawny withering 1	25.035
	CRR073319	Tawny withering 2	23.698
	CRR073320	Tawny withering 3	27.421