LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE025884

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE025884

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE025884AT4G29160.2SNF7 family protein1positive
GWHGAAZE012665AT3G49470.1nascent polypeptide-associated complex subunit alpha-like protein 2-0.65negative
GWHGAAZE006213AT4G22580.1Exostosin family protein-0.61negative
GWHGAAZE009631AT2G20340.1Pyridoxal phosphate (PLP)-dependent transferases superfamily protein-0.61negative
GWHGAAZE018393AT2G21250.1NAD(P)-linked oxidoreductase superfamily protein-0.61negative
GWHGAAZE000698AT5G58900.1Homeodomain-like transcriptional regulator-0.61negative
GWHGAAZE003700AT4G27690.1vacuolar protein sorting 26B-0.61negative
GWHGAAZE009277AT1G07420.2sterol 4-alpha-methyl-oxidase 2-1-0.6negative
GWHGAAZE004945AT4G17180.1O-Glycosyl hydrolases family 17 protein-0.6negative
GWHGAAZE005490AT3G53900.2uracil phosphoribosyltransferase-0.6negative
GWHGAAZE029720AT3G19720.1P-loop containing nucleoside triphosphate hydrolases superfamily protein-0.6negative
GWHGAAZE006483AT4G22290.1Ubiquitin-specific protease family C19-related protein-0.6negative
GWHGAAZE018128AT3G18050.1GPI-anchored protein;(source:Araport11)-0.6negative
GWHGAAZE004519AT1G29790.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein-0.6negative
GWHGAAZE007852AT4G08980.5F-BOX WITH WD-40 2-0.6negative
GWHGAAZE025285AT5G14790.1ARM repeat superfamily protein-0.59negative
GWHGAAZE009381AT5G58480.1O-Glycosyl hydrolases family 17 protein-0.59negative
GWHGAAZE001013AT1G08200.1UDP-D-apiose/UDP-D-xylose synthase 2-0.59negative
GWHGAAZE012526AT1G15000.1serine carboxypeptidase-like 50-0.59negative
GWHGAAZE000399AT2G20300.1Protein kinase superfamily protein-0.59negative
GWHGAAZE023529AT2G16390.1SNF2 domain-containing protein / helicase domain-containing protein-0.59negative
GWHGAAZE026756AT5G03040.3IQ-domain 2-0.59negative
GWHGAAZE013429AT1G68920.2basic helix-loop-helix (bHLH) DNA-binding superfamily protein-0.59negative
GWHGAAZE013311AT5G03770.1KDO transferase A-0.59negative
GWHGAAZE018285AT4G38430.1rho guanyl-nucleotide exchange factor 1-0.59negative
GWHGAAZE027597-----0.58negative
GWHGAAZE015014AT4G35640.1serine acetyltransferase 3;2-0.58negative
GWHGAAZE008955AT1G08460.1histone deacetylase 8-0.58negative
GWHGAAZE017826AT1G74520.1HVA22 homologue A-0.58negative
GWHGAAZE000761AT3G46550.1Fasciclin-like arabinogalactan family protein-0.58negative
GWHGAAZE007044AT5G19630.1alpha/beta-Hydrolases superfamily protein-0.58negative
GWHGAAZE026496AT1G06850.1basic leucine-zipper 52-0.58negative
GWHGAAZE027383AT1G56000.1FAD/NAD(P)-binding oxidoreductase family protein-0.57negative
GWHGAAZE015084AT1G79500.4Aldolase-type TIM barrel family protein-0.57negative
GWHGAAZE014814AT1G13280.1allene oxide cyclase 4-0.57negative
GWHGAAZE005280AT5G01020.1Protein kinase superfamily protein-0.57negative
GWHGAAZE013065AT5G02030.1POX (plant homeobox) family protein-0.57negative
GWHGAAZE022898AT1G70280.2NHL domain-containing protein-0.57negative
GWHGAAZE001027AT2G27810.1nucleobase-ascorbate transporter 12-0.57negative
GWHGAAZE006917AT1G30910.1Molybdenum cofactor sulfurase family protein-0.57negative
GWHGAAZE018651AT4G33680.1Pyridoxal phosphate (PLP)-dependent transferases superfamily protein-0.57negative
GWHGAAZE029765AT3G19540.1Protein of unknown function (DUF620)-0.57negative
GWHGAAZE014720AT3G49660.1Transducin/WD40 repeat-like superfamily protein-0.57negative
GWHGAAZE031206AT2G44640.1TRIGALACTOSYLDIACYLGLYCEROL-like protein;(source:Araport11)-0.57negative
GWHGAAZE030564AT5G50110.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein-0.57negative
GWHGAAZE012916AT3G53190.1Pectin lyase-like superfamily protein-0.57negative
GWHGAAZE030568AT1G74910.2ADP-glucose pyrophosphorylase family protein-0.57negative
GWHGAAZE005773-----0.56negative
GWHGAAZE030726AT5G14210.1Leucine-rich repeat protein kinase family protein-0.56negative
GWHGAAZE014638AT4G37450.1arabinogalactan protein 18-0.56negative
GWHGAAZE022661AT1G25500.2Plasma-membrane choline transporter family protein-0.56negative
GWHGAAZE000711AT2G29510.1Protein of unknown function (DUF3527)-0.56negative
GWHGAAZE005095AT5G04520.1Protein of unknown function DUF455-0.56negative
GWHGAAZE007120AT2G30140.2UDP-Glycosyltransferase superfamily protein-0.56negative
GWHGAAZE000928AT5G04250.2Cysteine proteinases superfamily protein-0.56negative
GWHGAAZE005245AT3G61650.1gamma-tubulin-0.56negative
GWHGAAZE004507AT4G18100.1Ribosomal protein L32e-0.56negative
GWHGAAZE013483AT2G03350.1Protein of unknown function, DUF538-0.56negative
GWHGAAZE027182AT4G27435.1Protein of unknown function (DUF1218)-0.56negative
GWHGAAZE029764AT3G19540.1Protein of unknown function (DUF620)-0.56negative
GWHGAAZE007375AT3G02580.1sterol 1-0.56negative
GWHGAAZE031819AT3G55850.1Amidohydrolase family-0.56negative
GWHGAAZE009487AT3G25500.1formin homology 1-0.56negative
GWHGAAZE029771AT2G14830.2Regulator of Vps4 activity in the MVB pathway protein-0.56negative
GWHGAAZE009243AT3G46550.1Fasciclin-like arabinogalactan family protein-0.56negative
GWHGAAZE030859AT1G15910.1XH/XS domain-containing protein-0.56negative
GWHGAAZE003968AT2G40830.3RING-H2 finger C1A-0.56negative
GWHGAAZE002803AT5G54770.1thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)-0.56negative
GWHGAAZE025357AT5G14450.1GDSL-like Lipase/Acylhydrolase superfamily protein-0.56negative


Expression profiling, GSEA and motif analysis