Gene detail

Detail information of GWHGAAZE029878

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009599814.1	PREDICTED: dynamin-related protein 3A-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8S944\|DRP3A_ARATH	Dynamin-related protein 3A
trEMBL	tr\|A0A067DYS6\|A0A067DYS6_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO44157.1}
TAIR10	AT4G33650.1	dynamin-related protein 3A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	34730049	34740733	+
GWHAAZE00000009	mRNA	34730049	34740733	+
GWHAAZE00000009	exon	34730049	34730429	+
GWHAAZE00000009	exon	34730506	34730547	+
GWHAAZE00000009	exon	34731023	34731123	+
GWHAAZE00000009	exon	34732182	34732371	+
GWHAAZE00000009	exon	34733534	34733816	+
GWHAAZE00000009	exon	34733941	34733969	+
GWHAAZE00000009	exon	34734071	34734172	+
GWHAAZE00000009	exon	34735028	34735096	+
GWHAAZE00000009	exon	34735183	34735242	+
GWHAAZE00000009	exon	34735449	34735562	+
GWHAAZE00000009	exon	34735970	34736018	+
GWHAAZE00000009	exon	34736105	34736214	+
GWHAAZE00000009	exon	34736306	34736398	+
GWHAAZE00000009	exon	34736583	34736675	+
GWHAAZE00000009	exon	34736758	34736895	+
GWHAAZE00000009	exon	34737163	34737276	+
GWHAAZE00000009	exon	34737417	34737512	+
GWHAAZE00000009	exon	34737916	34737958	+
GWHAAZE00000009	exon	34738192	34738340	+
GWHAAZE00000009	exon	34738427	34738573	+
GWHAAZE00000009	exon	34739575	34739627	+
GWHAAZE00000009	exon	34739789	34739888	+
GWHAAZE00000009	exon	34740443	34740733	+
GWHAAZE00000009	CDS	34730049	34730429	+
GWHAAZE00000009	CDS	34730506	34730547	+
GWHAAZE00000009	CDS	34731023	34731123	+
GWHAAZE00000009	CDS	34732182	34732371	+
GWHAAZE00000009	CDS	34733534	34733816	+
GWHAAZE00000009	CDS	34733941	34733969	+
GWHAAZE00000009	CDS	34734071	34734172	+
GWHAAZE00000009	CDS	34735028	34735096	+
GWHAAZE00000009	CDS	34735183	34735242	+
GWHAAZE00000009	CDS	34735449	34735562	+
GWHAAZE00000009	CDS	34735970	34736018	+
GWHAAZE00000009	CDS	34736105	34736214	+
GWHAAZE00000009	CDS	34736306	34736398	+
GWHAAZE00000009	CDS	34736583	34736675	+
GWHAAZE00000009	CDS	34736758	34736895	+
GWHAAZE00000009	CDS	34737163	34737276	+
GWHAAZE00000009	CDS	34737417	34737512	+
GWHAAZE00000009	CDS	34737916	34737958	+
GWHAAZE00000009	CDS	34738192	34738340	+
GWHAAZE00000009	CDS	34738427	34738573	+
GWHAAZE00000009	CDS	34739575	34739627	+
GWHAAZE00000009	CDS	34739789	34739888	+
GWHAAZE00000009	CDS	34740443	34740733	+

Transcript Sequence
>GWHTAAZE029912 ATGGCCGACGAACCACTAACTTCCCCTCCCTCCTCCCCCTCTCCTCCATCTTCAAACGCAGCTCCCCTCGGCCGCTCCGTGATCCCAACCATAAACAGGCTCCAAGACATATTCGCGCAGCTCGGTAGTTCATCCACTATCGAGCTACCTCAGGTTGCAGTTGTAGGCAGCCAGAGCAGCGGCAAATCGAGTGTTCTCGAAGCTCTAGTCGGCCGTGATTTCTTGCCTAGGGGCTCCGATATTTGTACGCGAAGGCCGCTTGTGCTTCAGCTACTGCAGACGAAGCGGAAGGGGGACGGGAGTGAGGAGGAGTATGGCGAGTTCTTGCACTTGCCGGGGAAGAGGTTCTTCAATTTCAATGAGATTCGGAAGGAGATTCAGGAGTTATTTTTCAACTTCAATGAGATTCGGAAGGAGATTCAGGTACTACTTGATGCATTGCTTTGTGCTTTTCGAAGGCAATGGTTTAAGGTTTATTTGGGCTTATTATATGTGAAGTTCGAATCTTTGATATTTCTTCATTGTCGACGTTGCCCAGCTCCTCCAGTCGACGTCTCTCCTCTGTTTTCTTCTCCACTCGACGTGTCTTGGGAGGTTTTCTCCTCCACTGGACGGCTCTCCTCTGTTTTTTCCAGAACACTCGACGTGTTCTGCTCCGTTTTCTCCTCCACTCGACGTTCCTCAAGATGTAAAGAGATGGTGGTCGCCTGGTCGGCCGAGACGGATAGAGAAGCAGGAGGAAACAAAGGTGTTTCTGACAAACAGATCCGATTGAAGATTTTTTCACCCAATGTTCTTGATATTACACTGGTGGATTTGCCGGGTATAACCAAGGTTCCCGTTGGTGACCAGCCTTCTGATATTGAAGCGCGGATTAGAACGATGATAATGTCATACATTAAACTTCCAAGCTGTTTGATACTAGCGGTTACACCAGCAAATTCTGACTTAGCAAACTCTGATGCTCTTCAAATAGCTGGAAACGCTGACCCTGATGGTTATAGAACAATTGGTGTGATCACAAAGTTGGATATTATGGACAGGGGTACTGATGCTCGCAACTTTTTGCTTGGGAAAGTGATTCCTCTTCGACTCGGTTATATAGGTGTTGTGAATCGTAGTCAAGAGGACATTATGTTCAACCGAACTATTAAGGATGCTCTTGTGGCTGAAGAGAAATTCTTTCGTAGTCGTCCGGTGTATAATGATATCGCTGATCGTTGTGGCGTCCCCCAATTGGCAAAGAAGTTGAACCAGATTTTGGTACAACATATCATGACAATGCTTCCAGGGTTGAAGAAACGCGTTGGCACTGAACTAGTTACTGTTGCAAAAGAACTTAATAGTTATGGAGAAATAACAGAATCGAAGGCTGGTCAGGGAGCTCTTCTTCTAAACATTCTTTCAAAGTATTCTGAAGCATTCTCTTCAATGATTGAGGGGAAGAATGAGGAAATGTCAACATATGAGCTGTCAGGTGGAGCAAGAATACATTATATCTTCCAATCAATTTTCGTGAAGAGTTTGGAGGAGGTGGATCCATGTGAGGACTTAACTGATGATGACATCCGAACTGCCATCCAGAATGCAACTGGTCCTAGATCTGCATTGTTTGTACCAGAAGTTCCATTTGAAGTTCTTATTCGACGGCAAATAGCTCGTTTGTTAGATCCTAGTCTTCAATGTGCAAGATTCATCTATGACGAGTTAATAAAGATGAGCCATTGCTGTATGGTTAATGAGCTTCAGCGGTTCCCTGTTCTAAGAAAACGCATGGATGAGGTGATAGGGAATTTTTTGCGAGAAGGTCTTGAACCATCAGAGACAATGATTGGACACATTGTAGAGATGGAGATGGACTACATCAACACTTCGCATCCGAATTTTATTGGGGGAAGCAAAGCTGTAGAGACTGCACAGCAGCAGATCAAATCGTCCAGGTTAGCTGCTCCAATTCTTAGGCCAAAGGATACAGTAGAGTCTGAAAAAGGACCATCATCTGAAAGAAGTCTCAGATCTCGTGCCATCCTTGCCAGACAACCTAATGGGATTGTTCCAGAGCAGGGAGTTCGGCCTGTTGCAGAAGTGGAGAAAGCCACACCATCTGGAAATACAACTGGCTCAAGCTGGGGGATTTCATCCATTTTTGGTGGGTCTGATAATCGCAATTCTAGCAAAGAGAATTCATCAAGCAAGCCATTTAGTGACCATGCTCAGAGCATGGAGCATTCACTATCTATCATCCATTTAAGAGAGCCCCCAACCGTCTTGAGGCCCACAGAAACCCATTCGGATGAGGAGAATCTTGAAATCACAGTCACAAAGCTGTTGTTGAGGTCGTATTATGACATTGTGAGAAAGAACGTCGAAGATGCCATACCTAAAGCAATTATGCACTTCTTGGTAAACCATACCAAACGAGAGCTGCACAATGTCTTCATTAGAAAGCTTTACAGAGACAACCTGTTTGAAGAGATGTTGCAAGAACCTAATGAGGTGGCGACAAAGAGAAAGGCTGCCAGAGAAAAACTCCGTGTTCTTCAGCAGGCTTTCCGGACATTGGATGAATTACCACTTGAAGCCGAGATGGTGGAGAGGGGTTACAGCTCGAATACTACTGATCCAACAGGCCTTCCCAAAATCCACGGGCTACCAACATCATCGTTTTACTCCACAAGCAGTGGTTCAACAGATTCATACACAGCTTCACCCAAGAACCCAAAGTCCCGTAAGTCATCTCATTCTGGGGAGCTATATTCTTCGTCCTATGCTAACTCAGACTCTAATGGAGGTAATCGAAATTCCGCTTTTGGCCTATATCCAACAGTTGATGCATATACTGTTTGA

Network for GWHGAAZE029878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.24	Dynamin_N	52	130	3.60E-21
PF00350.24	Dynamin_N	227	342	2.90E-25
PF01031.21	Dynamin_M	353	637	6.70E-102
PF02212.19	GED	767	856	1.00E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17065	DNM1L	TNF signaling pathway	map04668
		Mitophagy - yeast	map04139
		Apoptosis - fly	map04214
		Necroptosis	map04217
		NOD-like receptor signaling pathway	map04621

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.397
	SRR3591706	second leaf	14.913
	SRR3591707	mature leaf	19.503
	SRR3591708	Shoot apex	17.726
	SRR3591709	Stem	21.404
	SRR3591710	White floral bud	19.758
	SRR3591711	White flower	24.167
	SRR3591712	Green floral bud	19.545
	SRR3591713	Yellow flower	17.972
SRP173429	SRR8316895	Juvenile bud stage	11.279
	SRR8316896	Juvenile bud stage	16.069
	SRR8316897	Juvenile bud stage	6.930
	SRR8316894	Third green stage	6.000
	SRR8316900	Third green stage	17.219
	SRR8316901	Third green stage	15.955
	SRR8316898	Complete white stage	7.055
	SRR8316899	Complete white stage	22.028
	SRR8316903	Complete white stage	12.691
	SRR8316902	Silver flowering stage	8.613
	SRR8316904	Silver flowering stage	13.154
	SRR8316905	Silver flowering stage	6.722
	SRR8316906	Gold flowering stage	20.865
	SRR8316907	Gold flowering stage	19.012
	SRR8316908	Gold flowering stage	21.398
SRP132670	SRR6706286	Control	13.626
	SRR6706287	Light intensity 50%	14.607
	SRR6706288	Light intensity 20%	16.183
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.408
	CNS0095593	Slightly white alabastrum(diploid) 2	9.341
	CNS0095594	Slightly white alabastrum(diploid) 3	7.650
	CNS0095595	Whole white alabastrum(diploid) 2	9.011
	CNS0095596	Whole white alabastrum(diploid) 3	9.153
	CNS0095597	Whole white alabastrum(diploid) 4	8.976
	CNS0095598	Silvery flower (diploied) 1	14.829
	CNS0095599	Silvery flower (diploied) 2	9.994
	CNS0095600	Silvery flower (diploied) 3	25.634
	CNS0095601	Golden flower (diploid) 1	11.665
	CNS0095602	Golden flower (diploid) 2	22.630
	CNS0095603	Golden flower (diploid) 3	21.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.795
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.986
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.614
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.243
	CNS0095610	Silvery flower (diploied) 1	25.117
	CNS0095611	Silvery flower (diploied) 2	25.802
	CNS0095612	Silvery flower (diploied) 3	18.864
	CNS0095613	Golden flower (tetraploid) 1	13.096
	CNS0095614	Golden flower (tetraploid) 2	19.910
	CNS0095615	Golden flower (tetraploid) 3	19.856
CRA001975	CRR073297	Stem 1	17.762
	CRR073298	Stem 2	15.451
	CRR073299	Stem 3	15.782
	CRR073300	Leaf 1	14.713
	CRR073301	Leaf 2	12.035
	CRR073302	Leaf 3	9.692
	CRR073303	Juvenile bud 1	10.810
	CRR073304	Juvenile bud 2	8.674
	CRR073305	Juvenile bud 3	18.107
	CRR073306	Third green 1	5.712
	CRR073307	Third green 2	5.419
	CRR073308	Third green 3	6.642
	CRR073309	Second white 1	10.435
	CRR073310	Second white 2	11.863
	CRR073311	Second white 3	13.199
	CRR073312	Silver flowering 1	9.744
	CRR073313	Silver flowering 2	12.532
	CRR073314	Silver flowering 3	8.563
	CRR073315	Gold flowering 1	9.475
	CRR073316	Gold flowering 2	18.280
	CRR073317	Gold flowering 3	14.459
	CRR073318	Tawny withering 1	14.043
	CRR073319	Tawny withering 2	12.739
	CRR073320	Tawny withering 3	17.875