LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE029878

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE029878

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE029878AT4G33650.1dynamin-related protein 3A1positive
GWHGAAZE026091AT4G31880.2One of 5 PO76/PDS5 cohesion cofactor orthologs of Arabidopsis.0.9positive
GWHGAAZE009354AT3G11130.1Clathrin, heavy chain0.9positive
GWHGAAZE023065AT5G53150.1DNAJ heat shock N-terminal domain-containing protein0.89positive
GWHGAAZE018694AT4G33650.1dynamin-related protein 3A0.89positive
GWHGAAZE016095AT4G08350.1global transcription factor group A20.89positive
GWHGAAZE026212AT3G49600.1ubiquitin-specific protease 260.89positive
GWHGAAZE007294AT3G22170.2far-red elongated hypocotyls 30.89positive
GWHGAAZE012747AT3G61690.1nucleotidyltransferases0.89positive
GWHGAAZE017004AT2G22300.2signal responsive 10.89positive
GWHGAAZE016040AT5G08470.1peroxisome 10.88positive
GWHGAAZE000176AT1G03000.1peroxin 60.88positive
GWHGAAZE009668AT5G28900.1Calcium-binding EF-hand family protein0.88positive
GWHGAAZE012813AT5G06600.2ubiquitin-specific protease 120.87positive
GWHGAAZE027738AT4G17330.1G2484-1 protein0.87positive
GWHGAAZE012188AT4G02570.4cullin 10.87positive
GWHGAAZE013101AT5G02310.1proteolysis 60.87positive
GWHGAAZE000352AT1G08620.2Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein0.87positive
GWHGAAZE026111AT5G25060.1RNA recognition motif (RRM)-containing protein0.87positive
GWHGAAZE005336AT3G08850.1HEAT repeat ;WD domain, G-beta repeat protein protein0.87positive
GWHGAAZE025477AT5G13950.2nuclear factor kappa-B-binding protein;(source:Araport11)0.87positive
GWHGAAZE006390AT5G47010.1RNA helicase, putative0.87positive
GWHGAAZE030710AT3G48470.1embryo defective 24230.87positive
GWHGAAZE025718AT4G29380.1protein kinase family protein / WD-40 repeat family protein0.87positive
GWHGAAZE030513AT4G24680.1modifier of snc10.86positive
GWHGAAZE000449AT3G24870.1Helicase/SANT-associated, DNA binding protein0.86positive
GWHGAAZE031201AT3G60190.1DYNAMIN-like 1E0.86positive
GWHGAAZE033083AT5G15540.2PHD finger family protein0.86positive
GWHGAAZE012608AT5G16680.1RING/FYVE/PHD zinc finger superfamily protein0.86positive
GWHGAAZE030404AT1G73930.2polarity axis stabilization protein;(source:Araport11)0.86positive
GWHGAAZE000218AT2G48060.1piezo-type mechanosensitive ion channel component;(source:Araport11)0.86positive
GWHGAAZE031518AT1G76390.2ARM repeat superfamily protein0.86positive
GWHGAAZE004573AT5G46210.1cullin40.86positive
GWHGAAZE002301AT4G15180.1SET domain protein 20.86positive
GWHGAAZE006621AT4G21710.1DNA-directed RNA polymerase family protein0.86positive
GWHGAAZE022493AT2G01818.1PLATZ transcription factor family protein0.86positive
GWHGAAZE004901AT4G12570.1ubiquitin protein ligase 50.86positive
GWHGAAZE005875AT4G10570.1ubiquitin-specific protease 90.86positive
GWHGAAZE005225AT1G08600.4P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE018401AT2G16485.1nucleic acid binding;zinc ion binding;DNA binding0.86positive
GWHGAAZE003866AT5G06600.1ubiquitin-specific protease 120.86positive
GWHGAAZE014239AT1G70320.1ubiquitin-protein ligase 20.86positive
GWHGAAZE014111AT5G42920.2THO complex, subunit 50.86positive
GWHGAAZE022273AT5G49930.1zinc knuckle (CCHC-type) family protein0.86positive


Expression profiling, GSEA and motif analysis