Gene detail

Detail information of GWHGAAZE031135

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001241191.1	6.1622E-172	uncharacterized protein LOC100799919 [Glycine max]
COG	NP_613670.1	7E-69	proteasome subunit alpha
Swissprot	tr\|Q9M4T8\|PSA5_SOYBN	1E-173	Proteasome subunit alpha type-5
trEMBL	tr\|C6TGU2\|C6TGU2_SOYBN	2E-172	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT1G53850.2	3E-133	20S proteasome alpha subunit E1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	53807369	53813003	+
GWHAAZE00000009	mRNA	53807369	53813003	+
GWHAAZE00000009	exon	53807369	53807382	+
GWHAAZE00000009	exon	53807511	53807592	+
GWHAAZE00000009	exon	53807709	53807789	+
GWHAAZE00000009	exon	53808276	53808389	+
GWHAAZE00000009	exon	53808493	53808594	+
GWHAAZE00000009	exon	53809869	53809927	+
GWHAAZE00000009	exon	53810453	53810555	+
GWHAAZE00000009	exon	53812339	53812404	+
GWHAAZE00000009	exon	53812911	53813003	+
GWHAAZE00000009	CDS	53807369	53807382	+
GWHAAZE00000009	CDS	53807511	53807592	+
GWHAAZE00000009	CDS	53807709	53807789	+
GWHAAZE00000009	CDS	53808276	53808389	+
GWHAAZE00000009	CDS	53808493	53808594	+
GWHAAZE00000009	CDS	53809869	53809927	+
GWHAAZE00000009	CDS	53810453	53810555	+
GWHAAZE00000009	CDS	53812339	53812404	+
GWHAAZE00000009	CDS	53812911	53813003	+

Transcript Sequence
>GWHTAAZE031169 ATGTTTCTTACCAGGACCGAGTACGATAGAGGTGTGAATACCTTCTCTCCCGAAGGCCGATTGTTTCAGGTTGAATATGCCATTGAGGCCATCAAGTTAGGTTCAACGGCAATTGGGTTAAAGACCAAGGAAGGGGTTGTTCTTGCAGTTGAGAAGCGGATTACCTCACCACTTCTGGAACCCAGCAGTGTGGAGAAAATTATGGAAATTGATGAGCATATTGGCTGTGCAATGAGTGGGTTAATTGCCGATGCCCGTACACTCGTTGAACATGCACGAGTTGAAACTCAGAATCATAGGTTCTCGTATGGTGAGCCGATGACTGTTGAGTCCACTACACAAGCCCTTTGTGATTTGGCCCTGCGATTTGGTGAGGGCGATGAAGAATCTATGTCTCGACCTTTTGGTGTCTCTCTTCTCATTGCTGGTCATGATGAGAATGGTCCCAGCCTGTACTATACAGATCCTTCTGGCACGTTTTGGCAATGCAATGGAAAAGCAATTGGTTCAGGTTCTGAAGGTGCTGACAGCTCTTTGCAGGAGCAATATAACAAGGACTTGACACTAAAAGAAGCTGAAACAATAGCTCTTTCCATCCTGAAGCAAGTTATGGAAGAAAAGGTTACCCCGAATAACGTGGATATTGCAAAGGTCGCTCCGACTTACCATTTGTACACCCCTTCTGAGGTGGAGGATGTCATCGGTCGCCTATGA

Network for GWHGAAZE031135

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0088	GO:0004175 endopeptidase activity GOslim:molecular_function GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function GO:0005839 proteasome core complex GOslim:cellular_component GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process map03050 Proteasome GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process GOslim:biological_process

Module ID

Function Annotation

CFinderModule0088

GO:0004175 endopeptidase activity GOslim:molecular_function
GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function
GO:0005839 proteasome core complex GOslim:cellular_component
GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process
map03050 Proteasome
GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component
GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process GOslim:biological_process

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	8	30	1.20E-13
PF00227.27	Proteasome	31	218	6.50E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02729	PSMA5	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0004298	molecular_function	threonine-type endopeptidase activity
GO:0004175	molecular_function	endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	216.893
	SRR3591706	second leaf	111.276
	SRR3591707	mature leaf	64.538
	SRR3591708	Shoot apex	182.568
	SRR3591709	Stem	169.506
	SRR3591710	White floral bud	143.704
	SRR3591711	White flower	291.847
	SRR3591712	Green floral bud	155.095
	SRR3591713	Yellow flower	318.862
SRP173429	SRR8316895	Juvenile bud stage	97.194
	SRR8316896	Juvenile bud stage	136.094
	SRR8316897	Juvenile bud stage	65.968
	SRR8316894	Third green stage	50.697
	SRR8316900	Third green stage	166.975
	SRR8316901	Third green stage	164.777
	SRR8316898	Complete white stage	71.007
	SRR8316899	Complete white stage	178.763
	SRR8316903	Complete white stage	87.303
	SRR8316902	Silver flowering stage	98.626
	SRR8316904	Silver flowering stage	106.642
	SRR8316905	Silver flowering stage	56.012
	SRR8316906	Gold flowering stage	288.552
	SRR8316907	Gold flowering stage	262.798
	SRR8316908	Gold flowering stage	277.269
SRP132670	SRR6706286	Control	125.190
	SRR6706287	Light intensity 50%	131.054
	SRR6706288	Light intensity 20%	144.982
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	164.688
	CNS0095593	Slightly white alabastrum(diploid) 2	174.381
	CNS0095594	Slightly white alabastrum(diploid) 3	139.104
	CNS0095595	Whole white alabastrum(diploid) 2	133.093
	CNS0095596	Whole white alabastrum(diploid) 3	132.248
	CNS0095597	Whole white alabastrum(diploid) 4	118.473
	CNS0095598	Silvery flower (diploied) 1	123.283
	CNS0095599	Silvery flower (diploied) 2	143.440
	CNS0095600	Silvery flower (diploied) 3	183.812
	CNS0095601	Golden flower (diploid) 1	132.147
	CNS0095602	Golden flower (diploid) 2	159.869
	CNS0095603	Golden flower (diploid) 3	149.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	129.674
	CNS0095605	Slightly white alabastrum(tetraploid) 2	112.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	147.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.434
	CNS0095608	Whole white alabastrum(tetraploid) 2	87.807
	CNS0095609	Whole white alabastrum(tetraploid) 3	123.508
	CNS0095610	Silvery flower (diploied) 1	185.347
	CNS0095611	Silvery flower (diploied) 2	171.194
	CNS0095612	Silvery flower (diploied) 3	140.357
	CNS0095613	Golden flower (tetraploid) 1	182.618
	CNS0095614	Golden flower (tetraploid) 2	161.587
	CNS0095615	Golden flower (tetraploid) 3	194.792
CRA001975	CRR073297	Stem 1	161.280
	CRR073298	Stem 2	154.487
	CRR073299	Stem 3	213.461
	CRR073300	Leaf 1	193.064
	CRR073301	Leaf 2	216.407
	CRR073302	Leaf 3	244.396
	CRR073303	Juvenile bud 1	268.998
	CRR073304	Juvenile bud 2	224.292
	CRR073305	Juvenile bud 3	192.583
	CRR073306	Third green 1	142.901
	CRR073307	Third green 2	154.176
	CRR073308	Third green 3	129.948
	CRR073309	Second white 1	291.307
	CRR073310	Second white 2	263.918
	CRR073311	Second white 3	195.664
	CRR073312	Silver flowering 1	179.123
	CRR073313	Silver flowering 2	178.976
	CRR073314	Silver flowering 3	148.092
	CRR073315	Gold flowering 1	116.053
	CRR073316	Gold flowering 2	124.258
	CRR073317	Gold flowering 3	82.548
	CRR073318	Tawny withering 1	195.411
	CRR073319	Tawny withering 2	197.956
	CRR073320	Tawny withering 3	200.360