Gene detail

Detail information of GWHGAAZE033217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02154.1	1.2366E-173	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FL16\|PER63_ARATH	4E-142	Peroxidase 63 (Precursor)
trEMBL	tr\|A0A068U1X1\|A0A068U1X1_COFCA	5E-174	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02154.1}
TAIR10	AT5G40150.1	4E-114	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3048136	3049689	+
GWHAAZE00000094	mRNA	3048136	3049689	+
GWHAAZE00000094	exon	3048136	3048538	+
GWHAAZE00000094	exon	3049002	3049689	+
GWHAAZE00000094	five_prime_UTR	3048136	3048180	+
GWHAAZE00000094	CDS	3048181	3048538	+
GWHAAZE00000094	CDS	3049002	3049504	+
GWHAAZE00000094	three_prime_UTR	3049505	3049689	+

Transcript Sequence
>GWHTAAZE033256 AACACAGCCTACTACCAAAAAACATGCCCTAAATTCGAGCAGATAATGCAAGACACCACCACCAACAAGCAGATCAACTCACCCACCACCGCCGCCGCCGCACTCCGCCTCTTCTTCCACGACTGCCTAGTCGAAGGCTGCGACGCTTCCGTCCTCATCTCCTCCACCGCCTTCGCCAAGGCCGAGCGAGACGCCGACATCAACCTCTCCCTCCCCGGCGACGGCTTCGACGTCGTCGTCCGCGCCAAGACCGCCCTCGAACTCGCCTGTCCCGGCGTCGTATCCTGTTCCGACATACTCGCCGTCGCCGTTCGGAATCTCGTCACGATGATGGGCGGACCGTACTACACCGTCAAATTAGGGCGGAGAGATGGATTAGTATCCCGAGCTTCTCGTGTTGAAGGTAATCTTCCCAGGCCAACAATGTCAATGGACCAAATCATAAAAATTTTCACTTCGAGAGGATTCACAGTACAAGAAATGGTGGCGTTAACCGGAGCTCACACTATTGGATTCTCCCATTGTAAAGAGTTCAGTTCAAATATTTACAACTACAGCAAAAACGCACAATCTGATCCATCATATAATCCGAGATTCGCACAGGCATTGAGAGATGCTTGTGCCGATTACCACAACAACCCTACATTATCGGTGTTCAACGATGTCATGACTCCAAACAAATTTGATAATAAGTATTTTGACAATTTGCCAAAAGGATTGGGGATTTTGTCGTCGGATCGGGCTTTGGTTTCGGATCAGAGGACGAGGCCATTTGCGGAGACGTATGCTAAAGATCAGAATGCGTTCTTTGAGGCATTTGCTCGAGCAATGGAGAAGCTTAGCCTTTACGGGGTGAAGACGGGGAAGAGAGGACAGATTCGGCGAAGGTGTGATGCATTTAACTAAATTAGAGAGGGTTTTTTTTTTACTGTGGGTTGTGAACTATGTTCATGAGTATATGGTTTCTTTTAAAGTATTTTTGGTTTTTCTTGTGATGAATTGATAAATGTATACAAAGATTCTGTCATAATTTCATTATTAAAGTGATATATTCATTATATATAGTGTTATTTTCAATGGGTTTATTCGTG

Network for GWHGAAZE033217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	11	250	1.10E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	150.545
	SRR3591706	second leaf	32.329
	SRR3591707	mature leaf	11.674
	SRR3591708	Shoot apex	57.241
	SRR3591709	Stem	62.424
	SRR3591710	White floral bud	30.011
	SRR3591711	White flower	18.391
	SRR3591712	Green floral bud	61.841
	SRR3591713	Yellow flower	1.474
SRP173429	SRR8316895	Juvenile bud stage	35.474
	SRR8316896	Juvenile bud stage	37.505
	SRR8316897	Juvenile bud stage	36.279
	SRR8316894	Third green stage	19.193
	SRR8316900	Third green stage	75.930
	SRR8316901	Third green stage	68.913
	SRR8316898	Complete white stage	18.099
	SRR8316899	Complete white stage	162.258
	SRR8316903	Complete white stage	21.171
	SRR8316902	Silver flowering stage	4.463
	SRR8316904	Silver flowering stage	5.207
	SRR8316905	Silver flowering stage	1.831
	SRR8316906	Gold flowering stage	1.170
	SRR8316907	Gold flowering stage	0.633
	SRR8316908	Gold flowering stage	4.487
SRP132670	SRR6706286	Control	119.453
	SRR6706287	Light intensity 50%	132.522
	SRR6706288	Light intensity 20%	146.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.557
	CNS0095593	Slightly white alabastrum(diploid) 2	91.167
	CNS0095594	Slightly white alabastrum(diploid) 3	43.140
	CNS0095595	Whole white alabastrum(diploid) 2	70.313
	CNS0095596	Whole white alabastrum(diploid) 3	48.845
	CNS0095597	Whole white alabastrum(diploid) 4	85.137
	CNS0095598	Silvery flower (diploied) 1	64.468
	CNS0095599	Silvery flower (diploied) 2	50.272
	CNS0095600	Silvery flower (diploied) 3	21.648
	CNS0095601	Golden flower (diploid) 1	51.810
	CNS0095602	Golden flower (diploid) 2	34.779
	CNS0095603	Golden flower (diploid) 3	33.698
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.333
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.638
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.080
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	59.743
	CNS0095610	Silvery flower (diploied) 1	11.051
	CNS0095611	Silvery flower (diploied) 2	12.478
	CNS0095612	Silvery flower (diploied) 3	3.143
	CNS0095613	Golden flower (tetraploid) 1	1.474
	CNS0095614	Golden flower (tetraploid) 2	2.278
	CNS0095615	Golden flower (tetraploid) 3	1.051
CRA001975	CRR073297	Stem 1	79.676
	CRR073298	Stem 2	73.216
	CRR073299	Stem 3	73.119
	CRR073300	Leaf 1	157.550
	CRR073301	Leaf 2	194.645
	CRR073302	Leaf 3	176.997
	CRR073303	Juvenile bud 1	209.050
	CRR073304	Juvenile bud 2	163.508
	CRR073305	Juvenile bud 3	310.155
	CRR073306	Third green 1	11.845
	CRR073307	Third green 2	14.501
	CRR073308	Third green 3	20.356
	CRR073309	Second white 1	1.918
	CRR073310	Second white 2	0.522
	CRR073311	Second white 3	0.343
	CRR073312	Silver flowering 1	0.296
	CRR073313	Silver flowering 2	0.915
	CRR073314	Silver flowering 3	0.289
	CRR073315	Gold flowering 1	79.715
	CRR073316	Gold flowering 2	100.115
	CRR073317	Gold flowering 3	83.487
	CRR073318	Tawny withering 1	314.702
	CRR073319	Tawny withering 2	219.676
	CRR073320	Tawny withering 3	346.963