Gene detail

Detail information of GWHGAAZE033466

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082554.1	7.9892E-164	PREDICTED: proteasome subunit beta type-4-like [Sesamum indicum]
COG	YP_006862281.1	7E-16	proteasome subunit beta
Swissprot	tr\|Q7DLR9\|PSB4_ARATH	1E-147	Proteasome subunit beta type-4 (Precursor)
trEMBL	tr\|M1AE64\|M1AE64_SOLTU	1E-163	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT1G56450.1	5E-117	20S proteasome beta subunit G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	233886	242004	+
GWHAAZE00000104	mRNA	233886	242004	+
GWHAAZE00000104	exon	233886	233930	+
GWHAAZE00000104	exon	237190	237279	+
GWHAAZE00000104	exon	237377	237441	+
GWHAAZE00000104	exon	237882	237958	+
GWHAAZE00000104	exon	238902	239031	+
GWHAAZE00000104	exon	239144	239303	+
GWHAAZE00000104	exon	239384	239569	+
GWHAAZE00000104	exon	241891	242004	+
GWHAAZE00000104	five_prime_UTR	233886	233930	+
GWHAAZE00000104	five_prime_UTR	237190	237273	+
GWHAAZE00000104	CDS	237274	237279	+
GWHAAZE00000104	CDS	237377	237441	+
GWHAAZE00000104	CDS	237882	237958	+
GWHAAZE00000104	CDS	238902	239031	+
GWHAAZE00000104	CDS	239144	239303	+
GWHAAZE00000104	CDS	239384	239569	+
GWHAAZE00000104	CDS	241891	242004	+

Transcript Sequence
>GWHTAAZE033505 AAAGTTTTCTTGAGAGACGGGAAAACAAAAATTCATCCTTTACAAATCTCATCAGAAACCTACTCTCATCCTTTGTTCCAACTTCCTTCAAATCCTTCTCAGTTCAACAATCAAATCTAAATTCCAACAATGAACTTGGTTGATTCATCTCCAGCTAATAACAGCTTAAGGATCTTCGAAGCTTCATCTGAAAGAACACTGTATCCATATGTGACGGGCACATCTGTGCTTGGCATCAAATACAAGGACGGTATTCTTATGGCTGCCGATATGGGAGGGTCATATGGTTCTACCCTGCGTTACAAAAGTGTGGAGCGAATGAAGCCAGTTGGGAAGCACTCTCTTATTGGTGCAAGTGGAGAAATTAGCGATTTCCAAGAGATTATGCGTTCACTTGACAACCTTATCTTGTACGACAATATGTGGGATGATGGAAATTCCTTGGGCCCTAAAGAGGTGCACAACTATTTAACTCGTATGATGTACAACCGCCGCAACAAATTCGACCCTTTGTGGAATTCACTTGTACTTGGTGGAGTGAAAAATGGACAGAAGTATCTTGGAACGGTTAGTATGATTGGTGTACATTATGAGGACAATCATGTTGCCACTGGATTTGGAAATCACCTTGCACGGCCAATTTTCCGTGATGAATGGCACGAGAACATGAGTTTCGAGGAAGGTGTTAAGTTATTAGAGAAATGCATGCGTGTTCTTCTATATCGGGATAGGTCTGCCATCAACAAGCTTCAGATAGCCAAAATAACAGAAGAGGGTGTAACAGTTTCTCAGCCCTACTCTTTGAAGACCTTCTGGAATTTTGCTGCTTTTCAGAATCCAACCCTTGGTGCTGAGGGGTCGTGGTAG

Network for GWHGAAZE033466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	29	212	1.20E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02736	PSMB4	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	88.213
	SRR3591706	second leaf	44.975
	SRR3591707	mature leaf	43.025
	SRR3591708	Shoot apex	76.442
	SRR3591709	Stem	92.884
	SRR3591710	White floral bud	90.021
	SRR3591711	White flower	207.262
	SRR3591712	Green floral bud	82.217
	SRR3591713	Yellow flower	219.966
SRP173429	SRR8316895	Juvenile bud stage	62.670
	SRR8316896	Juvenile bud stage	91.580
	SRR8316897	Juvenile bud stage	42.006
	SRR8316894	Third green stage	38.135
	SRR8316900	Third green stage	118.405
	SRR8316901	Third green stage	115.713
	SRR8316898	Complete white stage	60.320
	SRR8316899	Complete white stage	149.963
	SRR8316903	Complete white stage	91.605
	SRR8316902	Silver flowering stage	80.923
	SRR8316904	Silver flowering stage	117.792
	SRR8316905	Silver flowering stage	56.465
	SRR8316906	Gold flowering stage	225.028
	SRR8316907	Gold flowering stage	208.739
	SRR8316908	Gold flowering stage	177.870
SRP132670	SRR6706286	Control	93.139
	SRR6706287	Light intensity 50%	93.051
	SRR6706288	Light intensity 20%	106.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	93.434
	CNS0095593	Slightly white alabastrum(diploid) 2	96.594
	CNS0095594	Slightly white alabastrum(diploid) 3	92.904
	CNS0095595	Whole white alabastrum(diploid) 2	86.492
	CNS0095596	Whole white alabastrum(diploid) 3	91.776
	CNS0095597	Whole white alabastrum(diploid) 4	79.642
	CNS0095598	Silvery flower (diploied) 1	98.000
	CNS0095599	Silvery flower (diploied) 2	103.402
	CNS0095600	Silvery flower (diploied) 3	191.902
	CNS0095601	Golden flower (diploid) 1	108.456
	CNS0095602	Golden flower (diploid) 2	175.926
	CNS0095603	Golden flower (diploid) 3	167.386
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.192
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.548
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.913
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	75.397
	CNS0095610	Silvery flower (diploied) 1	147.056
	CNS0095611	Silvery flower (diploied) 2	154.842
	CNS0095612	Silvery flower (diploied) 3	120.967
	CNS0095613	Golden flower (tetraploid) 1	159.957
	CNS0095614	Golden flower (tetraploid) 2	157.468
	CNS0095615	Golden flower (tetraploid) 3	211.875
CRA001975	CRR073297	Stem 1	74.663
	CRR073298	Stem 2	62.052
	CRR073299	Stem 3	86.496
	CRR073300	Leaf 1	73.492
	CRR073301	Leaf 2	69.223
	CRR073302	Leaf 3	92.779
	CRR073303	Juvenile bud 1	96.604
	CRR073304	Juvenile bud 2	90.814
	CRR073305	Juvenile bud 3	92.871
	CRR073306	Third green 1	75.468
	CRR073307	Third green 2	72.060
	CRR073308	Third green 3	74.594
	CRR073309	Second white 1	184.923
	CRR073310	Second white 2	164.185
	CRR073311	Second white 3	121.444
	CRR073312	Silver flowering 1	122.365
	CRR073313	Silver flowering 2	121.875
	CRR073314	Silver flowering 3	95.106
	CRR073315	Gold flowering 1	64.869
	CRR073316	Gold flowering 2	88.986
	CRR073317	Gold flowering 3	62.348
	CRR073318	Tawny withering 1	73.108
	CRR073319	Tawny withering 2	83.330
	CRR073320	Tawny withering 3	85.311