LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE003567

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE003567

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE003567AT1G63700.1Protein kinase superfamily protein1positive
GWHGAAZE023025AT1G27850.1Encodes a microtubule-associated protein involved in cortical microtubule organization during leaf development.0.91positive
GWHGAAZE005352AT2G38440.1SCAR homolog 20.91positive
GWHGAAZE016527AT1G47550.1exocyst complex component sec3A0.91positive
GWHGAAZE026654AT2G29200.1pumilio 10.91positive
GWHGAAZE012414AT3G13530.1mitogen-activated protein kinase kinase kinase 70.91positive
GWHGAAZE018198AT1G73450.1Protein kinase superfamily protein0.9positive
GWHGAAZE026626AT5G05970.2Transducin/WD40 repeat-like superfamily protein0.89positive
GWHGAAZE016091AT1G43850.2SEUSS transcriptional co-regulator0.89positive
GWHGAAZE022328AT5G23430.1Transducin/WD40 repeat-like superfamily protein0.89positive
GWHGAAZE030931AT1G80410.1tetratricopeptide repeat (TPR)-containing protein0.88positive
GWHGAAZE017352AT3G21295.1Tudor/PWWP/MBT superfamily protein0.88positive
GWHGAAZE009796AT1G03190.2RAD3-like DNA-binding helicase protein0.88positive
GWHGAAZE012714AT5G53060.1RNA-binding KH domain-containing protein0.88positive
GWHGAAZE014698AT5G65770.2little nuclei40.88positive
GWHGAAZE018730AT2G44710.1RNA-binding (RRM/RBD/RNP motifs) family protein0.88positive
GWHGAAZE012592AT5G60740.1ABC transporter family protein0.88positive
GWHGAAZE011539AT1G04510.1MOS4-associated complex 3A0.87positive
GWHGAAZE031857AT5G06970.1Protein of unknown function (DUF810)0.87positive
GWHGAAZE022656----0.87positive
GWHGAAZE006985AT5G16300.1Vps51/Vps67 family (components of vesicular transport) protein0.87positive
GWHGAAZE012601AT1G64880.1Ribosomal protein S5 family protein0.87positive
GWHGAAZE003711AT5G53620.3RNA polymerase II degradation factor;(source:Araport11)0.87positive
GWHGAAZE003309AT3G11130.1Clathrin, heavy chain0.87positive
GWHGAAZE018510AT2G15860.2BAT2 domain protein;(source:Araport11)0.87positive
GWHGAAZE031853AT5G06970.1Protein of unknown function (DUF810)0.87positive
GWHGAAZE025391AT5G40740.1Encodes a conserved AUGMIN subunit 6 (AUG6) which is known to be involved in microtuble nucleation. Mutants affect both male and female gametogenesis.0.87positive
GWHGAAZE008716AT1G55540.1Nuclear pore complex protein0.86positive
GWHGAAZE014432AT5G07980.1dentin sialophosphoprotein-related0.86positive
GWHGAAZE031334AT2G45540.1WD-40 repeat family protein / beige-related0.86positive
GWHGAAZE012960AT3G08850.1HEAT repeat ;WD domain, G-beta repeat protein protein0.86positive
GWHGAAZE030311AT1G48410.1Stabilizer of iron transporter SufD / Polynucleotidyl transferase0.86positive
GWHGAAZE029482AT5G24710.1Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE009708AT2G31320.1poly(ADP-ribose) polymerase 20.86positive
GWHGAAZE018185AT1G31930.3extra-large GTP-binding protein 30.86positive
GWHGAAZE030720AT1G29320.1Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE013005----0.86positive
GWHGAAZE022750AT1G26460.1Tetratricopeptide repeat (TPR)-like superfamily protein0.86positive
GWHGAAZE000421AT2G20190.1CLIP-associated protein0.86positive
GWHGAAZE031560AT4G01560.1Ribosomal RNA processing Brix domain protein0.86positive
GWHGAAZE005237AT1G64790.1ILITYHIA0.86positive
GWHGAAZE016992AT5G10200.1ARM-repeat/Tetratricopeptide repeat (TPR)-like protein0.86positive
GWHGAAZE027954AT1G15750.4Transducin family protein / WD-40 repeat family protein0.86positive
GWHGAAZE012265AT4G16110.1response regulator 20.86positive


Expression profiling, GSEA and motif analysis