LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE003781

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE003781

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE003781AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 41positive
GWHGAAZE000113AT3G14240.1Subtilase family protein0.94positive
GWHGAAZE002090AT1G06260.1Cysteine proteinases superfamily protein0.93positive
GWHGAAZE014775AT5G38200.1Class I glutamine amidotransferase-like superfamily protein0.92positive
GWHGAAZE002896AT5G55360.1MBOAT (membrane bound O-acyl transferase) family protein0.92positive
GWHGAAZE014783AT5G33340.1Eukaryotic aspartyl protease family protein0.92positive
GWHGAAZE028390AT5G36110.1cytochrome P450, family 716, subfamily A, polypeptide 10.92positive
GWHGAAZE031541AT2G46770.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.91positive
GWHGAAZE007232AT1G68570.1Major facilitator superfamily protein0.91positive
GWHGAAZE017309AT3G13890.2myb domain protein 260.91positive
GWHGAAZE002895AT5G55360.1MBOAT (membrane bound O-acyl transferase) family protein0.91positive
GWHGAAZE029665AT3G06470.1GNS1/SUR4 membrane protein family0.91positive
GWHGAAZE027535AT4G23490.1Protein of unknown function (DUF604)0.91positive
GWHGAAZE015971AT3G52320.1F-box and associated interaction domains-containing protein0.9positive
GWHGAAZE004161AT1G24540.1cytochrome P450, family 86, subfamily C, polypeptide 10.9positive
GWHGAAZE031934AT1G08830.2copper/zinc superoxide dismutase 10.9positive
GWHGAAZE001145AT3G52525.1ovate family protein 60.9positive
GWHGAAZE028402AT5G36110.1cytochrome P450, family 716, subfamily A, polypeptide 10.9positive
GWHGAAZE009958AT2G16760.1Calcium-dependent phosphotriesterase superfamily protein0.9positive
GWHGAAZE002306AT4G15210.1beta-amylase 50.9positive
GWHGAAZE000607AT2G30300.1Major facilitator superfamily protein0.9positive
GWHGAAZE029779AT1G47670.1Transmembrane amino acid transporter family protein0.9positive
GWHGAAZE033846AT1G15690.1Inorganic H pyrophosphatase family protein0.9positive
GWHGAAZE017305AT3G13890.2myb domain protein 260.9positive
GWHGAAZE011634AT2G06960.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.89positive
GWHGAAZE008735AT2G23790.1Protein of unknown function (DUF607)0.89positive
GWHGAAZE008731AT2G23790.1Protein of unknown function (DUF607)0.89positive
GWHGAAZE015978AT4G38870.1F-box and associated interaction domains-containing protein0.89positive
GWHGAAZE007115AT3G21090.1ABC-2 type transporter family protein0.88positive
GWHGAAZE009738AT1G03055.1Encodes the ortholog of rice D27. It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.0.88positive
GWHGAAZE007114AT2G41690.1heat shock transcription factor B30.88positive
GWHGAAZE013566AT3G56370.1Leucine-rich repeat protein kinase family protein0.88positive
GWHGAAZE031513AT4G09510.1cytosolic invertase 20.88positive
GWHGAAZE014774AT5G33340.1Eukaryotic aspartyl protease family protein0.87positive
GWHGAAZE030201AT2G16910.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.87positive
GWHGAAZE025089AT5G51160.1Ankyrin repeat family protein0.87positive
GWHGAAZE003407AT5G07440.2glutamate dehydrogenase 20.87positive
GWHGAAZE011904AT3G06100.1NOD26-like intrinsic protein 7;10.87positive
GWHGAAZE010635AT3G59710.1NAD(P)-binding Rossmann-fold superfamily protein0.86positive
GWHGAAZE008944AT3G44220.1Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family0.86positive
GWHGAAZE017733AT5G50260.1Cysteine proteinases superfamily protein0.86positive
GWHGAAZE005454AT5G01220.1sulfoquinovosyldiacylglycerol 20.86positive
GWHGAAZE003401----0.86positive
GWHGAAZE026057AT5G20260.1Exostosin family protein0.86positive
GWHGAAZE000828AT5G59700.1Protein kinase superfamily protein0.86positive
GWHGAAZE027999AT1G31880.1DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein0.86positive


Expression profiling, GSEA and motif analysis