LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE006060

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE006060

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE006060AT2G24190.2NAD(P)-binding Rossmann-fold superfamily protein1positive
GWHGAAZE015682AT3G47570.1Leucine-rich repeat protein kinase family protein0.92positive
GWHGAAZE015043AT3G51480.1glutamate receptor 3.60.92positive
GWHGAAZE020012AT4G10310.1high-affinity K+ transporter 10.92positive
GWHGAAZE031397AT4G23340.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.9positive
GWHGAAZE031002----0.9positive
GWHGAAZE018939AT4G26090.1NB-ARC domain-containing disease resistance protein0.9positive
GWHGAAZE028406AT5G47390.1myb-like transcription factor family protein0.9positive
GWHGAAZE019381AT3G48320.1cytochrome P450, family 71, subfamily A, polypeptide 210.9positive
GWHGAAZE023272AT1G33730.1cytochrome P450, family 76, subfamily C, polypeptide 50.9positive
GWHGAAZE020481AT1G74040.12-isopropylmalate synthase 10.9positive
GWHGAAZE007401AT5G38510.2Rhomboid-related intramembrane serine protease family protein0.9positive
GWHGAAZE020011AT4G10310.1high-affinity K+ transporter 10.9positive
GWHGAAZE015762AT3G47570.1Leucine-rich repeat protein kinase family protein0.89positive
GWHGAAZE003915AT1G08810.2myb domain protein 600.89positive
GWHGAAZE031001----0.89positive
GWHGAAZE013265AT3G52740.1Plant specific protein.BIC1 and BIC2 inhibit cryptochrome function by blocking blue light-dependent cryptochrome dimerization.Light activated transcription of BICs is mediated by cryptochromes.0.89positive
GWHGAAZE015784AT3G47570.1Leucine-rich repeat protein kinase family protein0.89positive
GWHGAAZE011038AT3G06240.1F-box family protein0.89positive
GWHGAAZE028153AT5G53110.1RING/U-box superfamily protein0.89positive
GWHGAAZE019382AT3G48310.1cytochrome P450, family 71, subfamily A, polypeptide 220.89positive
GWHGAAZE033485AT1G29720.1Leucine-rich repeat transmembrane protein kinase0.88positive
GWHGAAZE028836AT1G12090.1extensin-like protein0.88positive
GWHGAAZE033787AT5G41980.1nuclease;(source:Araport11)0.88positive
GWHGAAZE003126AT2G28550.1related to AP2.70.88positive
GWHGAAZE000884----0.88positive
GWHGAAZE003914AT1G08810.1myb domain protein 600.88positive
GWHGAAZE032121AT5G35170.1adenylate kinase family protein0.88positive
GWHGAAZE005367AT2G38330.1MATE efflux family protein0.88positive
GWHGAAZE027652AT2G05920.1Subtilase family protein0.88positive
GWHGAAZE012599AT1G64860.1sigma factor A0.88positive
GWHGAAZE019396AT3G48310.1cytochrome P450, family 71, subfamily A, polypeptide 220.88positive
GWHGAAZE027660AT5G67360.1Subtilase family protein0.88positive
GWHGAAZE014731AT4G37930.1serine transhydroxymethyltransferase 10.88positive
GWHGAAZE019626AT2G46495.1RING/U-box superfamily protein0.88positive
GWHGAAZE019400AT3G48310.1cytochrome P450, family 71, subfamily A, polypeptide 220.88positive
GWHGAAZE019388AT3G48320.1cytochrome P450, family 71, subfamily A, polypeptide 210.88positive
GWHGAAZE017168AT1G45616.1receptor like protein 60.88positive
GWHGAAZE020388AT3G28890.2receptor like protein 430.88positive
GWHGAAZE027654AT5G67360.1Subtilase family protein0.88positive
GWHGAAZE000550AT5G08720.1Encodes PIN2 PROMOTER BINDING PROTEIN 1 (PPP1), an evolutionary conserved plant-specific DNA binding protein that acts on transcription of PIN genes. Also named as HCF145. Mutations in HCF145 have reduced level of the tricistronic psaA-psaB-rps (small-subunit ribosomal protein)14 mRNA which encodes for the major subunits of the photosystem I (PSI). HCF145 binds to the 5'UTR of PSAA via a novel TMR domain. It functions to stabilize the PSAA transcript.0.87positive
GWHGAAZE020031AT5G11180.1glutamate receptor 2.60.87positive
GWHGAAZE012127AT4G15530.6pyruvate orthophosphate dikinase0.87positive
GWHGAAZE015741AT4G20270.1Leucine-rich receptor-like protein kinase family protein0.87positive
GWHGAAZE031808AT1G33540.1serine carboxypeptidase-like 180.87positive
GWHGAAZE015768AT3G47570.1Leucine-rich repeat protein kinase family protein0.87positive
GWHGAAZE033483AT1G70520.1cysteine-rich RLK (RECEPTOR-like protein kinase) 20.87positive
GWHGAAZE033141AT5G15240.1Transmembrane amino acid transporter family protein0.87positive
GWHGAAZE023282AT2G45580.1cytochrome P450, family 76, subfamily C, polypeptide 30.87positive
GWHGAAZE020392AT2G34930.1disease resistance family protein / LRR family protein0.87positive
GWHGAAZE013420AT3G42860.1zinc knuckle (CCHC-type) family protein0.87positive
GWHGAAZE004013----0.87positive
GWHGAAZE010233AT2G38100.1proton-dependent oligopeptide transport (POT) family protein0.87positive
GWHGAAZE010973AT5G53110.1RING/U-box superfamily protein0.87positive
GWHGAAZE033768AT5G39130.1RmlC-like cupins superfamily protein0.87positive
GWHGAAZE033763AT5G39130.1RmlC-like cupins superfamily protein0.87positive
GWHGAAZE020813AT3G15420.1Transcription factor TFIIIC, tau55-related protein0.87positive
GWHGAAZE012277AT4G24220.2NAD(P)-binding Rossmann-fold superfamily protein0.86positive
GWHGAAZE016935AT5G64840.1general control non-repressible 50.86positive
GWHGAAZE021054AT5G39000.1Malectin/receptor-like protein kinase family protein0.86positive
GWHGAAZE002098AT2G20570.1GBF's pro-rich region-interacting factor 10.86positive
GWHGAAZE009975AT4G01935.1insulin-induced protein;(source:Araport11)0.86positive
GWHGAAZE028397AT5G56840.1myb-like transcription factor family protein0.86positive
GWHGAAZE030557AT5G50090.1D-ribose-binding periplasmic protein;(source:Araport11)0.86positive
GWHGAAZE020413AT3G28890.2receptor like protein 430.86positive
GWHGAAZE030386AT1G25440.1B-box type zinc finger protein with CCT domain0.86positive
GWHGAAZE015998AT1G21270.1wall-associated kinase 20.86positive
GWHGAAZE004096AT1G22360.1UDP-glucosyl transferase 85A20.86positive
GWHGAAZE033762AT5G39130.1RmlC-like cupins superfamily protein0.86positive
GWHGAAZE010962AT1G70250.1receptor serine/threonine kinase, putative0.86positive
GWHGAAZE033764AT5G39130.1RmlC-like cupins superfamily protein0.86positive
GWHGAAZE023587AT3G07040.1NB-ARC domain-containing disease resistance protein0.86positive
GWHGAAZE032333AT4G33500.1Protein phosphatase 2C family protein0.86positive
GWHGAAZE000885AT1G61560.1Seven transmembrane MLO family protein0.86positive
GWHGAAZE027472AT4G24020.1NIN like protein 70.86positive
GWHGAAZE002047AT2G30980.1SHAGGY-related protein kinase dZeta0.86positive
GWHGAAZE009879AT1G02910.1tetratricopeptide repeat (TPR)-containing protein0.86positive
GWHGAAZE019387AT3G48310.1cytochrome P450, family 71, subfamily A, polypeptide 220.86positive
GWHGAAZE002097AT2G20570.2GBF's pro-rich region-interacting factor 10.86positive


Expression profiling, GSEA and motif analysis