LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE007881

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE007881

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE007881AT5G65140.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein1positive
GWHGAAZE005521AT5G02230.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein0.95positive
GWHGAAZE026760AT2G30860.1glutathione S-transferase PHI 90.92positive
GWHGAAZE013001AT3G51840.1acyl-CoA oxidase 40.91positive
GWHGAAZE023884AT1G75280.1NmrA-like negative transcriptional regulator family protein0.91positive
GWHGAAZE015203AT5G65380.1MATE efflux family protein0.89positive
GWHGAAZE018698AT2G14110.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein0.88positive
GWHGAAZE030595AT5G62680.1Major facilitator superfamily protein0.88positive
GWHGAAZE014729AT1G67720.1Leucine-rich repeat protein kinase family protein0.88positive
GWHGAAZE018770AT1G36050.2Endoplasmic reticulum vesicle transporter protein0.88positive
GWHGAAZE027124AT2G16575.1ATG8A/F interacting protein containing a WxxL LIR motif at the C terminus which is essential for interaction with ATG8. Stress (abiotic or biotic) results in the formation of ATG8- and ATI3-labeled punctate structures, likely reflecting increased formation of ATG8-labeled phagophores or autophagosomes. ATI3 proteins probably act as selective autophagy receptors that target specific cellular components during the plant stress response. ATI3 proteins are delivered to the vacuole under ER stress in an autophagy-dependent manner.0.88positive
GWHGAAZE007039AT3G25810.1Terpenoid cyclases/Protein prenyltransferases superfamily protein0.88positive
GWHGAAZE006078AT4G11600.1glutathione peroxidase 60.87positive
GWHGAAZE013963AT2G21520.1Sec14p-like phosphatidylinositol transfer family protein0.87positive
GWHGAAZE032721AT2G36190.1cell wall invertase 40.87positive
GWHGAAZE012998AT3G51840.1acyl-CoA oxidase 40.87positive
GWHGAAZE023192AT3G50810.1Uncharacterised protein family (UPF0497)0.87positive
GWHGAAZE028420AT4G32940.1gamma vacuolar processing enzyme0.87positive
GWHGAAZE022453AT2G02040.1peptide transporter 20.87positive
GWHGAAZE029250AT3G11480.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.87positive
GWHGAAZE027074AT1G53580.1glyoxalase II 30.86positive
GWHGAAZE007090AT3G57550.2guanylate kinase0.86positive
GWHGAAZE006151AT4G22920.1non-yellowing 10.86positive
GWHGAAZE031500AT3G61750.1Cytochrome b561/ferric reductase transmembrane with DOMON related domain0.86positive
GWHGAAZE029274AT3G11480.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.86positive
GWHGAAZE002355AT1G05120.1Helicase protein with RING/U-box domain0.86positive
GWHGAAZE030287AT1G17830.1Protein of unknown function (DUF789)0.86positive


Expression profiling, GSEA and motif analysis