LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE015654

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE015654

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE015654AT3G14270.1phosphatidylinositol-4-phosphate 5-kinase family protein1positive
GWHGAAZE018326AT4G38600.1HEAT repeat ;HECT-domain (ubiquitin-transferase)0.91positive
GWHGAAZE004901AT4G12570.1ubiquitin protein ligase 50.9positive
GWHGAAZE016870AT5G09350.1phosphatidylinositol 4-OH kinase beta20.89positive
GWHGAAZE016871AT5G64070.1phosphatidylinositol 4-OH kinase beta10.89positive
GWHGAAZE000145AT4G02480.1AAA-type ATPase family protein0.89positive
GWHGAAZE009866AT3G62900.1CW-type Zinc Finger0.89positive
GWHGAAZE006936AT5G44800.1chromatin remodeling 40.88positive
GWHGAAZE026649AT5G13010.1RNA helicase family protein0.88positive
GWHGAAZE009881AT1G02890.2AAA-type ATPase family protein0.88positive
GWHGAAZE033100AT5G15400.1U-box domain-containing protein0.88positive
GWHGAAZE001667AT1G65580.1Endonuclease/exonuclease/phosphatase family protein0.88positive
GWHGAAZE030516AT3G48195.1Phox (PX) domain-containing protein0.87positive
GWHGAAZE031544AT4G00800.1transducin family protein / WD-40 repeat family protein0.87positive
GWHGAAZE031432AT5G12370.2exocyst complex component sec100.87positive
GWHGAAZE013552----0.87positive
GWHGAAZE004219AT3G11960.1Cleavage and polyadenylation specificity factor (CPSF) A subunit protein0.87positive
GWHGAAZE024875AT2G46020.2transcription regulatory protein SNF2, putative0.87positive
GWHGAAZE007912AT2G22010.1related to KPC10.87positive
GWHGAAZE017751AT5G61140.2U5 small nuclear ribonucleoprotein helicase0.86positive
GWHGAAZE027173AT1G79570.1Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain0.86positive
GWHGAAZE013681AT1G24460.1Encodes a novel protein that co-immunoprecipitates with SYP41. It is involved in vacuolar trafficking and salt tolerance, potentially via a role in vesicle fusion and in maintaining TGN structure or identity. Mutants display delayed formation of the Brefeldin A (BFA) compartment in cotyledons upon application of BFA.0.86positive
GWHGAAZE009134AT5G60410.3DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain0.86positive
GWHGAAZE012321AT3G17205.3ubiquitin protein ligase 60.86positive
GWHGAAZE022126AT3G62900.1CW-type Zinc Finger0.86positive
GWHGAAZE013803AT1G20760.1Calcium-binding EF hand family protein0.86positive
GWHGAAZE005875AT4G10570.1ubiquitin-specific protease 90.86positive
GWHGAAZE006010AT4G11270.1Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE018411AT1G62020.1Coatomer, alpha subunit0.86positive
GWHGAAZE015252AT2G19390.1serine/arginine repetitive matrix protein;(source:Araport11)0.86positive
GWHGAAZE024707AT3G05090.2Transducin/WD40 repeat-like superfamily protein0.86positive


Expression profiling, GSEA and motif analysis