LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE017502

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE017502

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE017502AT3G15730.1phospholipase D alpha 11positive
GWHGAAZE027388AT5G45030.2Trypsin family protein-0.61negative
GWHGAAZE027425AT5G29000.2Homeodomain-like superfamily protein-0.6negative
GWHGAAZE013723AT1G27340.1Galactose oxidase/kelch repeat superfamily protein-0.59negative
GWHGAAZE020194AT4G31170.3Protein kinase superfamily protein-0.59negative
GWHGAAZE017856AT1G18890.1calcium-dependent protein kinase 1-0.59negative
GWHGAAZE016859AT1G53570.4mitogen-activated protein kinase kinase kinase 3-0.59negative
GWHGAAZE013932AT4G39090.1Papain family cysteine protease-0.59negative
GWHGAAZE028930AT5G25220.1KNOTTED1-like homeobox gene 3-0.59negative
GWHGAAZE005078AT3G10480.2NAC domain containing protein 50-0.58negative
GWHGAAZE013551AT5G15080.1Protein kinase superfamily protein-0.58negative
GWHGAAZE005048AT3G54850.1plant U-box 14-0.58negative
GWHGAAZE002545AT1G78420.2RING/U-box superfamily protein-0.58negative
GWHGAAZE013888AT4G24200.1Transcription elongation factor (TFIIS) family protein-0.58negative
GWHGAAZE006700AT1G30090.1Galactose oxidase/kelch repeat superfamily protein-0.57negative
GWHGAAZE011302AT1G04780.1Ankyrin repeat family protein-0.57negative
GWHGAAZE004245AT1G08570.1atypical CYS HIS rich thioredoxin 4-0.57negative
GWHGAAZE002186AT4G27470.1RING membrane-anchor 3-0.57negative
GWHGAAZE030905AT1G68140.3Protein of unknown function (DUF1644)-0.57negative
GWHGAAZE022062AT5G19010.1mitogen-activated protein kinase 16-0.57negative
GWHGAAZE025427AT5G14120.1Major facilitator superfamily protein-0.57negative
GWHGAAZE001147AT5G22220.2E2F transcription factor 1-0.56negative
GWHGAAZE011338AT1G04780.1Ankyrin repeat family protein-0.56negative
GWHGAAZE006125AT1G12580.1phosphoenolpyruvate carboxylase-related kinase 1-0.56negative
GWHGAAZE004728AT2G18750.3Calmodulin-binding protein-0.56negative
GWHGAAZE023927AT1G34370.2C2H2 and C2HC zinc fingers superfamily protein-0.56negative
GWHGAAZE022822AT2G02800.2protein kinase 2B-0.56negative
GWHGAAZE023926AT1G34370.2C2H2 and C2HC zinc fingers superfamily protein-0.56negative
GWHGAAZE009609AT3G07020.2UDP-Glycosyltransferase superfamily protein-0.56negative


Expression profiling, GSEA and motif analysis