LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE017572

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE017572

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE017572AT1G80860.2phospholipid N-methyltransferase1positive
GWHGAAZE025298AT3G27930.1Encodes a novel plant-specific beta-barrel protein that likely plays a role in the transport of metabolites and in leaf senescence.0.91positive
GWHGAAZE007408AT5G66680.1dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein0.91positive
GWHGAAZE019218AT1G31830.2Amino acid permease family protein0.91positive
GWHGAAZE015890AT1G18340.1basal transcription factor complex subunit-related0.9positive
GWHGAAZE000594AT1G06890.3nodulin MtN21 /EamA-like transporter family protein0.9positive
GWHGAAZE006229AT4G16510.1YbaK/aminoacyl-tRNA synthetase-associated domain0.9positive
GWHGAAZE018756AT4G21790.1tobamovirus multiplication 10.9positive
GWHGAAZE015054ATCG00020.1photosystem II reaction center protein A0.89positive
GWHGAAZE008357AT1G15680.1F-box family protein0.89positive
GWHGAAZE003228AT2G39750.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.89positive
GWHGAAZE024604----0.89positive
GWHGAAZE024644AT2G24765.1ADP-ribosylation factor 30.88positive
GWHGAAZE026548AT5G05480.1Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein0.88positive
GWHGAAZE024876AT2G46000.1LDL receptor wingless signaling/trafficking chaperone;(source:Araport11)0.88positive
GWHGAAZE023473AT3G49890.1hypothetical protein;(source:Araport11)0.88positive
GWHGAAZE008946AT3G29763.1General transcription factor 2-related zinc finger protein0.88positive
GWHGAAZE030013AT1G75110.1Nucleotide-diphospho-sugar transferase family protein0.88positive
GWHGAAZE005179AT1G54650.2Methyltransferase family protein0.87positive
GWHGAAZE027309AT5G55470.1Na+/H+ (sodium hydrogen) exchanger 30.87positive
GWHGAAZE033828AT4G01960.1transmembrane protein;(source:Araport11)0.87positive
GWHGAAZE030378AT1G68390.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein0.87positive
GWHGAAZE007183AT3G12600.1nudix hydrolase homolog 160.87positive
GWHGAAZE013119----0.87positive
GWHGAAZE003867AT2G38910.1calcium-dependent protein kinase 200.87positive
GWHGAAZE013465AT2G03510.1SPFH/Band 7/PHB domain-containing membrane-associated protein family0.87positive
GWHGAAZE019201AT2G47470.1thioredoxin family protein0.87positive
GWHGAAZE016816AT2G19220.1Myb/SANT-like DNA-binding domain protein;(source:Araport11)0.87positive
GWHGAAZE003634AT5G24130.1polypyrimidine tract-binding-like protein;(source:Araport11)0.87positive
GWHGAAZE000229AT1G03260.1SNARE associated Golgi protein family0.87positive
GWHGAAZE012133AT5G18900.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.87positive
GWHGAAZE011494AT4G13510.1ammonium transporter 1;10.87positive
GWHGAAZE023852AT3G12520.2sulfate transporter 4;20.87positive
GWHGAAZE025005AT2G45200.1golgi snare 120.87positive
GWHGAAZE000795AT5G59740.1UDP-N-acetylglucosamine (UAA) transporter family0.86positive
GWHGAAZE012545AT1G15020.2quiescin-sulfhydryl oxidase 10.86positive
GWHGAAZE029921AT5G09400.1K+ uptake permease 70.86positive
GWHGAAZE009888AT1G02860.1SPX (SYG1/Pho81/XPR1) domain-containing protein0.86positive
GWHGAAZE027246AT5G54850.1hexon;(source:Araport11)0.86positive
GWHGAAZE031961AT4G30996.1Protein of unknown function (DUF1068)0.86positive
GWHGAAZE005949AT4G23900.1Nucleoside diphosphate kinase family protein0.86positive
GWHGAAZE033615AT5G20590.1TRICHOME BIREFRINGENCE-LIKE 50.86positive
GWHGAAZE013601AT1G23820.1spermidine synthase 10.86positive
GWHGAAZE031776AT3G54510.1Early-responsive to dehydration stress protein (ERD4)0.86positive
GWHGAAZE025974AT4G13340.1Leucine-rich repeat (LRR) family protein0.86positive
GWHGAAZE025849AT1G23070.1Protein of unknown function (DUF300)0.86positive
GWHGAAZE016682AT1G42480.1TLR4 regulator/MIR-interacting MSAP protein;(source:Araport11)0.86positive
GWHGAAZE023787AT5G11980.1conserved oligomeric Golgi complex component-related / COG complex component-related0.86positive
GWHGAAZE033502AT5G63690.1Nucleic acid-binding, OB-fold-like protein0.86positive
GWHGAAZE024071AT1G21750.1PDI-like 1-10.86positive
GWHGAAZE022497AT4G17720.1RNA-binding (RRM/RBD/RNP motifs) family protein0.86positive
GWHGAAZE007825AT5G65420.1CYCLIN D4;10.86positive
GWHGAAZE022991AT1G13180.1Actin-like ATPase superfamily protein0.86positive
GWHGAAZE013679AT1G24480.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.86positive
GWHGAAZE014074AT4G11800.1Calcineurin-like metallo-phosphoesterase superfamily protein0.86positive
GWHGAAZE025778AT4G29735.2transmembrane protein;(source:Araport11)0.86positive
GWHGAAZE004007AT3G12600.1nudix hydrolase homolog 160.86positive
GWHGAAZE024837AT5G05620.1gamma-tubulin complex protein 20.86positive
GWHGAAZE029620AT4G24330.1Protein of unknown function (DUF1682)0.86positive


Expression profiling, GSEA and motif analysis