LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE019923

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE019923

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE019923AT3G06350.1dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative1positive
GWHGAAZE019423AT3G05500.1Rubber elongation factor protein (REF)-0.64negative
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase-0.63negative
GWHGAAZE023927AT1G34370.2C2H2 and C2HC zinc fingers superfamily protein-0.62negative
GWHGAAZE026200AT5G24800.1basic leucine zipper 9-0.62negative
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase-0.62negative
GWHGAAZE030766AT5G50700.1hydroxysteroid dehydrogenase 1-0.61negative
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase-0.61negative
GWHGAAZE013932AT4G39090.1Papain family cysteine protease-0.61negative
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 1-0.59negative
GWHGAAZE021159AT4G15550.1indole-3-acetate beta-D-glucosyltransferase-0.59negative
GWHGAAZE008133AT1G60690.1NAD(P)-linked oxidoreductase superfamily protein-0.59negative
GWHGAAZE020238AT3G13050.1Major facilitator superfamily protein-0.59negative
GWHGAAZE021045AT5G39000.1Malectin/receptor-like protein kinase family protein-0.59negative
GWHGAAZE023971AT4G08180.1OSBP(oxysterol binding protein)-related protein 1C-0.59negative
GWHGAAZE009976AT4G01940.1NFU domain protein 1-0.59negative
GWHGAAZE022295-----0.58negative
GWHGAAZE024940AT1G12600.1UDP-N-acetylglucosamine (UAA) transporter family-0.58negative
GWHGAAZE024394AT1G33290.1P-loop containing nucleoside triphosphate hydrolases superfamily protein-0.58negative
GWHGAAZE017612AT5G51040.1Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.-0.58negative
GWHGAAZE023416AT4G37260.1myb domain protein 73-0.58negative
GWHGAAZE012565AT1G15100.1RING-H2 finger A2A-0.58negative
GWHGAAZE014218AT1G09960.1sucrose transporter 4-0.58negative
GWHGAAZE004197AT2G15490.3UDP-glycosyltransferase 73B4-0.58negative
GWHGAAZE023782AT2G22590.1UDP-Glycosyltransferase superfamily protein-0.57negative
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein-0.57negative
GWHGAAZE015248AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.57negative
GWHGAAZE029287AT4G34131.1UDP-glucosyl transferase 73B3-0.57negative
GWHGAAZE006014AT1G63970.1isoprenoid F-0.57negative
GWHGAAZE002831AT4G27030.1fatty acid desaturase A-0.57negative
GWHGAAZE030179AT4G38690.1PLC-like phosphodiesterases superfamily protein-0.57negative
GWHGAAZE023926AT1G34370.2C2H2 and C2HC zinc fingers superfamily protein-0.57negative
GWHGAAZE029245AT3G05545.1RING/U-box superfamily protein-0.57negative
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.57negative
GWHGAAZE033124AT3G47500.1cycling DOF factor 3-0.57negative
GWHGAAZE005859AT2G36090.1F-box family protein-0.57negative
GWHGAAZE033207AT5G14970.1seed maturation-like protein;(source:Araport11)-0.57negative
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E2-0.57negative
GWHGAAZE003054AT1G79160.1filamentous hemagglutinin transporter;(source:Araport11)-0.57negative
GWHGAAZE004198AT1G22370.2UDP-glucosyl transferase 85A5-0.57negative
GWHGAAZE032753AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.56negative
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)-0.56negative
GWHGAAZE014864AT5G66450.2Phosphatidic acid phosphatase (PAP2) family protein-0.56negative
GWHGAAZE031137AT1G53840.1pectin methylesterase 1-0.56negative
GWHGAAZE008933AT2G36090.1F-box family protein-0.56negative
GWHGAAZE025068AT1G02090.1Proteasome component (PCI) domain protein-0.56negative
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)-0.56negative
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein-0.56negative
GWHGAAZE032499AT1G51200.4A20/AN1-like zinc finger family protein-0.56negative
GWHGAAZE025165AT2G44430.1DNA-binding bromodomain-containing protein-0.56negative
GWHGAAZE007706AT3G51510.1transmembrane protein;(source:Araport11)-0.56negative


Expression profiling, GSEA and motif analysis