LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE030643

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE030643

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE030643AT5G61410.2D-ribulose-5-phosphate-3-epimerase1positive
GWHGAAZE012791AT1G64090.2Reticulan like protein B3-0.61negative
GWHGAAZE004251AT5G18280.1apyrase 2-0.61negative
GWHGAAZE018597AT2G18990.1thioredoxin domain-containing protein 9 homolog-0.6negative
GWHGAAZE017400AT1G79820.2Major facilitator superfamily protein-0.6negative
GWHGAAZE026975AT1G04990.2Zinc finger C-x8-C-x5-C-x3-H type family protein-0.6negative
GWHGAAZE017960AT2G42490.1Copper amine oxidase family protein-0.6negative
GWHGAAZE004885AT4G05520.1EPS15 homology domain 2-0.6negative
GWHGAAZE004067-----0.6negative
GWHGAAZE026319AT3G53020.1Ribosomal protein L24e family protein-0.6negative
GWHGAAZE029641AT1G22030.1BPS1-like protein;(source:Araport11)-0.59negative
GWHGAAZE030082AT4G39080.1vacuolar proton ATPase A3-0.59negative
GWHGAAZE004658AT4G32551.1LisH dimerisation motif;WD40/YVTN repeat-like-containing domain-0.59negative
GWHGAAZE003375AT1G61670.1Lung seven transmembrane receptor family protein-0.59negative
GWHGAAZE011745AT3G22845.1emp24/gp25L/p24 family/GOLD family protein-0.59negative
GWHGAAZE017301AT1G60970.1SNARE-like superfamily protein-0.59negative
GWHGAAZE007247AT4G31350.2Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein-0.59negative
GWHGAAZE013707AT1G67410.1Exostosin family protein-0.58negative
GWHGAAZE026390AT5G35730.1EXS (ERD1/XPR1/SYG1) family protein-0.58negative
GWHGAAZE026395AT1G62820.1Calcium-binding EF-hand family protein-0.58negative
GWHGAAZE008168AT1G67680.1SRP72 RNA-binding domain-0.58negative
GWHGAAZE033197AT5G15050.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein-0.58negative
GWHGAAZE029418AT4G02080.1secretion-associated RAS super family 2-0.58negative
GWHGAAZE009638AT5G43960.1Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-0.58negative
GWHGAAZE017499AT5G62200.1Embryo-specific protein 3, (ATS3)-0.58negative
GWHGAAZE009797AT4G09820.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein-0.58negative
GWHGAAZE026265AT5G49210.2stress response NST1-like protein;(source:Araport11)-0.58negative
GWHGAAZE029922AT1G78160.1pumilio 7-0.58negative
GWHGAAZE014563AT5G66870.1ASYMMETRIC LEAVES 2-like 1-0.57negative
GWHGAAZE005015AT1G16300.1glyceraldehyde-3-phosphate dehydrogenase of plastid 2-0.57negative
GWHGAAZE007307AT4G37820.1transmembrane protein;(source:Araport11)-0.57negative
GWHGAAZE006476AT4G12610.2transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors-0.57negative
GWHGAAZE011976AT1G55750.1BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)-0.57negative
GWHGAAZE002150AT5G53970.1Tyrosine transaminase family protein-0.57negative
GWHGAAZE021935AT3G24020.1Disease resistance-responsive (dirigent-like protein) family protein-0.57negative
GWHGAAZE001374AT3G08580.2ADP/ATP carrier 1-0.57negative
GWHGAAZE027313AT5G47540.1Mo25 family protein-0.57negative
GWHGAAZE003190AT2G39550.1Prenyltransferase family protein-0.57negative
GWHGAAZE017513AT3G15820.1phosphatidic acid phosphatase-related / PAP2-related-0.57negative
GWHGAAZE030095AT4G34660.1SH3 domain-containing protein-0.57negative
GWHGAAZE031348AT4G25440.1zinc finger WD40 repeat protein 1-0.57negative
GWHGAAZE026846AT5G44280.1RING 1A-0.57negative
GWHGAAZE018457AT4G34450.1coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative-0.57negative
GWHGAAZE005564AT5G59840.1Ras-related small GTP-binding family protein-0.57negative
GWHGAAZE001813AT1G55320.2acyl-activating enzyme 18-0.57negative
GWHGAAZE027037AT4G26550.1Got1/Sft2-like vescicle transport protein family-0.56negative
GWHGAAZE018981AT5G49160.1methyltransferase 1-0.56negative
GWHGAAZE004817AT1G61850.1phospholipases;galactolipases-0.56negative
GWHGAAZE005398AT5G58640.1Selenoprotein, Rdx type-0.56negative
GWHGAAZE026826AT5G60860.1RAB GTPase homolog A1F-0.56negative
GWHGAAZE032391AT2G44060.2Late embryogenesis abundant protein, group 2-0.56negative
GWHGAAZE002594AT1G53490.1RING/U-box superfamily protein-0.56negative
GWHGAAZE016922AT1G53050.1Protein kinase superfamily protein-0.56negative
GWHGAAZE030943AT1G52320.2kinesin-like protein;(source:Araport11)-0.56negative
GWHGAAZE003469AT4G25340.1FK506 BINDING PROTEIN 53-0.56negative
GWHGAAZE021832AT1G04520.1plasmodesmata-located protein 2-0.56negative
GWHGAAZE009732AT2G38840.1Guanylate-binding family protein-0.56negative
GWHGAAZE024419AT1G22870.1Protein kinase family protein with ARM repeat domain-0.56negative
GWHGAAZE032113AT1G56110.1homolog of nucleolar protein NOP56-0.56negative
GWHGAAZE022497AT4G17720.1RNA-binding (RRM/RBD/RNP motifs) family protein-0.56negative
GWHGAAZE023046AT1G67420.2Zn-dependent exopeptidases superfamily protein-0.56negative
GWHGAAZE013791AT1G76400.1Ribophorin I-0.56negative
GWHGAAZE006500AT5G42570.1B-cell receptor-associated 31-like-0.56negative


Expression profiling, GSEA and motif analysis