PlantGSEA Analysis

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Module enrichment analysis

1. Choose Modules

G1:Ontology
BP:GO biological process
CC:GO cellular component
MF:GO molecular function
PO:Plant Ontology
G2:Gene Family Based gene sets
UB:Ubiquitins
TF/R:Transcription Factors/Regulators
PK:Protein Kinase
G3:Pathway
KEGP:KEGG pathway
KEGM:KEGG module
MaizeCyc:MaizeCyc
G4:Others
CELL:Subcelluar Location
DOMAIN:functional Domain
G5:Targets
MIR:MicroRNA Targets
TFT:Transcript Factor Targets
EPIMARK: Epigenetic mark
G6:CFinder predicted co-expression module
B73 global RNA-seq network module
B73 tissue specific conditional network module
B73 biotic stress conditional network module
B73 abiotic stress conditional network module
B73 maize kernel conditional network module
B73 maize development conditional network module
B73 maize embryo and endosperm conditional network module
B73 maize leaf section conditional network module
B73 tissue specific Microarray network module
Mo17 tissue specific RNA-seq network module
G7:ChromHMM predicted states (38)
G8:SOM units (1350)

2. Choose Background

Suggested background (Whole genome level)
Customized background

Example of Query

Or you can upload file (max filesize 5MB)

3. Submit Your Query

Example

Or you can upload file (size <= 5MB)

4. Parameter Select(optional)

Statistical test method

Multi-test adjustment method

Significance Level