Gene Detail

1.Annotation (Gramene)

not available!

2.Location

Chromosome	Strand	Region	Start	End	UCSC
2	+	gene	28394276	28396372	LINK

3.Sequences

Gene:

>GRMZM2G006952

ATGGAGTCATCGCCGGCCACGGCCATGGCACCCGCGTCCTCATCGCGGGCCGCCAGGGACCCGCTCCTCTTCGCCCGCTTCGACCTCCCCGCCGGCTGGGGGTGCCGCAAGCCCTTGGCCTTTTGCCGGGAGGCCTGGGACACGGACGACGCCCCCATCGCGTCCGAGCCTGCCGCCATAGCCGCCACCACCGAGGGTGTCAAGGACAGCGACGAGACCCAATCGCCGACGCGAGCGACCGCAACGGTGCAGCAGGCGCCCGCGGCGGGGGAGGTGACGCAGGAAGCTCCCTGGAAACAGTGGAACCTGCGGGAGTGGACGTCGTGGCGGGATTATAGTAACAGAGCGGACGACTTGCGTGCACGACAGGCCAGGAAGCTCGAGAGCACAGACGCCGGTGGCAGCCGCCGGTTGTCGCTGTCGGTGAAGCTGACTCGGCAGGAGATCGACGCCGACTTCGCCAAGATCACCGGCAGCAAGGCGCCGCGCCGGCCCACGAAGCGGAGCAAGACCGTCCAGCGCAAAATCGAGGTGCGTGGTCTCACCGCTCAGGCAGCAATGCCGGTCATCTCGATCGATCTCCTAACCGCCGTCGCAGGATGATCCATGACTCCATATGAGTTCGTTTCGTTGGTCGGGTTTGTTGGTTGCTGATCATGCGCTTCGTTCTCTTGTGGCGCAGACGCTTTGCCCAGGGAGTTCGCTGGTGTAGGTGACCCTCGACCGGTACAAGGTGAACGAGGTACGTGCATCTGAAAAAATTCCATATTTATTATTTCGCTGTAGTTTGTTGCTTGGGAGGCCTGGGATGAGACGACGATTGATCTGACTCTTGTTCCTGTGGGTGCAGAAAGGAAGATTTTGATTTCTTCTAAGTCACGCGAGTAAGAAAGGGAGAAGAGGAAGAGGAGGAGATGGATTTTACAACGGAGGAGATTGATCGAGCAATGTCTGCCTCCTCATCTCGTGATGCATCAATGCTTACCACAAGGTACTTCCTCTTAACCATAAGGAATTAAATGTGTGATTTCACTATGTTGTTTGTGCGTATATTGACTCATCTGTTTGCTTGGCTCCAGTTTTCTTCATTTAAGGCAAAATGTGAACTGCATTTTGAAATTAGTGATGTTATCTCTATTCTTCAGAGAACCTTTTTCTTACACTTGTATGCCTTTGCAGATGGATACCATAATTAGTGGAATAATGCATTAAATTGCCCATCTGTTTTACAGGTCACATGAAAAGATTCTAATCTTTTGCAAATTAACACCTTAGACCAGATTAAACTCTCTTATGAAGCAGCAGCTTCGGCTTCTGGTTCCTGCATATTCAAGCAAACGAAATAGGTTATACATGATGTGTCAATAAAATACAAATACTTTATAATTCAAGTTTTCTTCATTGCATTTATACAACTGCAATCAAAACATGTATGCTTCTGAGTTAACACTGAACTCTCTTATGAAGCAGCAATTGGAGGATATTTTTTGATAAAAATTTGTAAAATGGGGTACTGTTGGAGCCGTTTTTTATCAATTGAGACTTATATTTTCAAGATAGGACACTGAGTTAGGGCACTGTTGGAGATGCTTTACTTGATAGCTGGTTAGACTTCTACTTGACATTTCTACCTGGCAGGCTGTTGTACTCACAAGCCAAATTCCAGAAAATACTGGATAGTTCCTTTACTGTAAAAGTGGGTTTCCCCTAGCTGTCAAAGTTATAAATGTCATCTTATCTAATGAAGAAGCACAAGGAATATTGGAAATTCATTTCTCAAATTGCTTATTTACTGCAATGTCTAGAATCTAGATGGTTTCATGCTATAGTGTTGTTCATATTATATGGTGATAATGTACATATAGAACTTATGATGGTGTTAGCTATGCTGTCATGGATCTGATTTCTTTCATGATATCGTTTCTACTATGCAGGGTTGAAAACCAAGAGGATGTTGTAATGGATCTGTTCATGTGTCTGATATGTGTATCCATTTTCTTCTGCAGGATGGCTGGCGATTCTTCTGACAGGGCCAACATTATTTCTTTAAGAGAAAATATAAATAGAGAACAACAGATGAACATGGGAAACCAGTGA

Promoter(up TSS 3kb):

>GRMZM2G006952_promoter

CTTCTCCACCGTTGCCATCTATCTTTACGTTACGTGTTCCAGTTTTGACCAGGCAGTTCTTTGTGCCGCCCGCCAAATATACCTGTAGTAGTAGCAGTACTTCCATTCCATCCATATGAATCTAGCGAGCCTCGAGATTTTTTCTCTGATCCAACAAGTCGCTTATTGGTGTACGTGTACGTGCAGGCCTGGAGCAACAACCTGTACAAGAGCGTGGAGCACAAGGTGGTGGCCAACGCCGCGGCGGAGCGCTTCTCGGCGGCCTACTTCCTGTGCCCGTCCTACGACTCGCTCGTCGGCACGTGCGGCGAGCCGTCACCGTACAGAGACTTCACCTTCGGGGAGTACAGGAGGAAGGTGCAGGAGGACGTCAAGAGGACCGGAAGAAAGATTGGGCTCCCCAACTTTCTCAAACACCGGCCACCCCCTCAATCACGGCCCGCCTAAAATTGACAAGTCAAAGCACCTGCCGTTTTGCTCTCGAGAAATGACGAGAGCACCTTTTTCTCCTGTAACTTCACGGTGGATGCGAGCACGACCTCACTGTGTACAAGAAATATATATATATATAATATGAACCCTTTGAGGCGCTTGCTTCTTTTTCTTTTTCTTTGCTTAGCTCATATATAGTAGAGGTCACTGTACAAGAAAGTGAACGAGGACGACGCGTGCCTGTGCCTGTGCGCTTATCAAGCTATCCTCATTATATAATTTCAGCGATTTCCGATGGAAGAAAACGTTTATCTACATATATTGTACTACCCCTCTTGCACAGAAAAAACTACTTTACTTTCTAGTAATTTACTTTTGCCGTTTAGATTAGCTTATTATTATTATTATTACGACCAAGAATACATGTGTATCGTAATAGTACATACAATTTAAATTTATAGCGTGGTGCTTGCGACAATAATAAACTCTTCTTTAGCAAGTTACTAAATAGCTAGCTATTGAAAGTAAAAATCGTTTAGTCTCCAACCGTTTCTAATATTTAGAGAGCATTTTAATTTTGAATCTACACGCGCTTGTTTTTTTTTCGGTCTCTCCCTACGGATCTCCTGGCGACGCACAGCTGCACGAAACAAGACTGACGGTGCATAGCTGCAACAAGTTGGTACAAAGCATCAAAGCATCATGTAGCCATATTCTCGTATGATCTAATCAATGTACCTTGACTATTTTAATAATATTTGCTTGACCTTTGCCTCGTGGGTGTGAAAAAACGGGCCAAATCTCTACGCGGGCGTGAAAATAGTCGGCAGTAACTGTTCGAGAGTGGCTATGCAGTCTCCAAATATGAAGACAAATTGAGTTGGATAACAAGTTACTACATCTACAAGTCTATTTAGAGAAGTATTTTTCACTACTTCTTAAATTTAAGGTTTATTAGGTTGTTTAGAGAACAATCGAAGATGCTCTAAAGGAAGAAAGCTAGGGACGATAGATGGGTGCGTTTGGTGCTGTATATACTTTAGGATTTGGACATATGTGACTCAGATGATAGATATTATTGTTTTCTCTCATATGATAGACATCCTGGATGAGAGATGGGGGCTCGTACGTGGACAAACACATCAATGTTATCTAATATTTTTATTATTAAATAATTAAGAAAACGTTTATCTACTTATATTGTACTACCCCTCTTGCACACACAAAAAAACTACTTTACTTTCTAGTAATTTACTTTTGCCGTTTAGTTTACCTTTTTTTAATAATATTACTAGCGAAAATACATGTGTATTTTAATAGCACATACAATTTATAGCGTGGTGCTTGTGACAATAATAATGAGCTAGTTGTTTTTGGGGATTTAATGAGGTTTAGTCCCATATTAAATTAAACCTATTTTATGGCCCATATCAAAACCAAACTTAAAGTGACAAGGAAGAAAGCTCTAGGGTGCGTTCGGTCCGTTGTATATCCTGGATAGGATATGGACATCTCTGATATCTGACTCAGATGATAGATATTCTTGTTTTCTCTCGTATGATAGATATCCTGTGGTTCGTGGACAAACTCATCCATATTTTTTAATCTTTGTTATCAGTAAATAATTAAGGATTACTAGTATGCTATATTATTGCTTAGTAGTTATGATATCAAAATTAACTTTGATAAAATGCTAATAAGTTATTCAATGCACGTTTTGTATGATAATTAGGATACTTATGGTGTTAATTAAAATGTTTTATTTGTAATCTCTACTACTCTATATGAATCTATTGTAGGCGTCCACAGCACCACTGTTCTGCCGCCGCGATCGTCCTCCCGCACGCGCTGCCCCAAACCCGCCCCGCCATCAGCGCCAACACACCGCGCCGCCAGCAATCAACGCCCGCGGATCTCCCACCCTTCTCCCCGCCGCCGCCGCAATCAACGCGGTCCTCCCCCACACGGATCCGCGTGTCCTCCCCACCGCCGCCGCAATGGAAGCTCAGCGGGCGTTCCTTCCCCCGCAGTCCGCCACCTCCGCGCCCCCACCAAACCGGAAGGCGAGATCCGCCGCCAGCCGTCACAGGGAAGGAAGGTCGAGCGAGTCGGGGAAGGAAGGTCGCGCGAGTCGGGGACCCGCCAGGCATCCCGTGCCCGCCGTCGGGATACATGTGTCCGCTGCCGCGTCATCCCCGCCTTCCCCCTGCTCAGCCCCTCCGTGCCCCCGCCGCGCGCAACAGCTCCCTCCCCCTGAATCACGCAAGGTCCCCACCCATCGATGTCGCCCATCCGCGTTGTCCCCCTCCCCCTGAATCACGCAAGTTCCTTGCCCGTCGATGTCGCCCATCCGCGTCGTGCCCCCGACATCGGCGTCTTCCTCGATCTCCACTTCGTCAACAAGCCCGAGGTGTTCACCAGGGCGCACCAGTCGCCCAACATTTTTTGCCTGACCTGCTTCTCCTTGATTTGTGATCTTAGGGTTGGTTCTTGTTCCTCCAGGCTACTGCGTTGTGAAATCCATCTCTTCCTCTTCCCCCTTTCTTGCTCGCGCGACTCGGCGCGCCA

Transcript:

>GRMZM2G006952_T01

CDS:

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E13,E11,E13,E11,E17,E19,E30,E31,E23,	E31,E19,E16,E38,	E38,E30,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G006952_P01	PF07797.11	DUF1639	144	186	7.80E-18

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT1G25370	1.00E-10
Arabidopsis thaliana	AT3G60410	1.00E-07
Arabidopsis thaliana	AT1G68340	9.00E-06
Oryza sative	LOC_Os05g47820	1.00E-26
Oryza sative	LOC_Os05g46395	3.00E-06
Oryza sative	LOC_Os05g48280	7.00E-05

7.Heuristic function module

Category	Family
Subcellular location	nucleus
Subcellular location	plastid

8.Predicted function module

Category	Family
null	null