GRMZM2G014089's detail annotation

1.Annotation (Gramene)

Annotation: Uncharacterized protein

2.Location

ChromosomeStrandRegionStartEndUCSC
8-gene152253211152257798LINK

3.Sequences

Gene:
Promoter(up TSS 3kb):
Transcript:
CDS:
Protein:

4.Chromatin states

States in Promoter (2kb)States in GenebodyStates in Downstream (2kb)
E38,E26,E23,E11,E3,E4E11,E4,E2,E2,E6,E4,E6,E4,E6,E3,E6,E13,E6E6,E4,E13,E11,E12,E25

5.Protein domain

Protein IDPfam AccessionPfam AnnotationAlignment StartAlignment StartE-value
GRMZM2G014089_P01PF00005.24ABC_tran3885371.00E-32
GRMZM2G014089_P01PF00664.20ABC_membrane503211.10E-58
GRMZM2G014089_P01PF00664.20ABC_membrane7139846.30E-56

6.Blast top3 hits

SpeciesGene IDBlast Evalue
Arabidopsis thalianaAT1G025200
Arabidopsis thalianaAT2G470000
Arabidopsis thalianaAT3G621500
Oryza sativeLOC_Os01g501600
Oryza sativeLOC_Os01g500800
Oryza sativeLOC_Os05g475000

7.Heuristic function module

CategoryFamily
KEGG pathwayzma02010
GOGO:0042626
GOGO:0016887
GOGO:0017111
GOGO:0000166
GOGO:0005524
GOGO:0016021
GOGO:0055085
GOGO:0006200
GOGO:0006810
Subcellular locationcytosol
Subcellular locationmitochondrion
Subcellular locationnucleus
Subcellular locationperoxisome
Subcellular locationplasma membrane

8.Predicted function module

CategoryFamily
B73 Global RNA-seq networkB73RALLCFM32
B73 Global Microarray networkB73MGSE27004CFM516
B73 Global Microarray networkB73MGSE27004CFM574
B73 Global Microarray networkB73MGSE27004CFM575
B73 abiotic stress conditional networkABIOTICCFM11
B73 maize kernal conditional networkGSE62778CFM699
B73 maize kernal conditional networkGSE62778CFM700
B73 maize embryo and endosperm conditional networkSRP037559CFM44

9.Expression pattern