Gene Detail

1.Annotation (Gramene)

not available!

2.Location

Chromosome	Strand	Region	Start	End	UCSC
1	+	gene	280619868	280626429	LINK

3.Sequences

Gene:

>GRMZM2G037617

GGAATTTGTCCGTATTTGAAATCAGAAAAGAACATAGGGGAAGGCAGGTTCGACAAAGGTGTACCTTCGACCCGCGAGAAGCCAGGTCTGTACAATCAGCCCTCTTCCAATTCTCTCGATTTTACCATAAAAATATCACAAAACAAGGAAAGGTAATCTACGCGCGGTGACGATCCAGAGCGGGTACGTGGTGGCGCTCAAGGTGATATATAAGGCGAAACTGCAGAAGTACCACTTCCACGCGCACCTGCGGCGGGAGATCGAGATCCAGCAGAGTCTCGACCACCCTAACGTGCTCCGCCTCTTCACCTGGTTCCACGACGAAGAGCGAGTCGTCCTCGTCCTCGAGTACGCGGCCCGTGGCGAGCTCTACAAGGTCCTTCGCGCTGCTGGCCGCTTCACCGAGCGCACGTCCGCCACAGTAAAAAACCCCCCCGTTTTCCTTTTGCTTCACTTTTATTTCCCGGTTGTGCCTACGGCTGGATTGCCATTCCTCCTACTGTTATTAACCTAAATCATGTTAACCTGAACCATAATAACCGATGCAAAGTCTCATGTGACAGCAACTGTGTACATACAAAGTTCCCGAGAACTAGGCAGCTAGACCATGAGCCGAGTAGTTATATGGTTGGTAATTCTGTGATATTACTTCTATTCAGGTCATGAATGGTAGCAAGAAAGTTTTGAGTAATGGCCTAACTTGATTTTACTGGAATCAGATATCGTGTATGACAGGAGTCATCAATTGCTGGTACATTGTGTGCAATGGCCAATGGTTACAAGTCACATCAAAGGCAGTTGACATTGAACAAAATTCGATATTTGCAAATTTTTAGTGCCATTTAATAAACTTTCAAAATGATATTTTGGATTTTATGGATCTTTGCATTATCTGATTGCAGCATTAAGTATTCTTTAGAAACTCTTAATGCATAGGAGTATAAGTTAAGCTGAACCAAATGTTTATGTGAACTGCTAATCATGTGTCACACATGCAGTGCGCTCTGCAGTTTATGACTTTATTGCCCTGAACCCATACATTTATACACAAAACATAGAGAGAATGCATGACATCTCTTTTAACATGACACTGTCTCAGTCTCAACTTGTGATGATGCCATTATTGCCAAGAACTTGTGCTGCCATTGGCATACCACACCCTAGAGCATGGTGTGTGTGTGTGTATGCAGGTTTCCTTCTGGTTTGCCATTCTTTTGTTAGATTGTGATAACCGTGAATCTTATGTGTTTTAGTATGTAGCGAGTCTTGCTGGTGCACTGGCATACTGTCACAAAAAGCAAGTCATTCATAGGGACATCAAGCCTGAGAATTTGCTAATCGACATCGAGGTTGGTTCTTCTTTATGAAGTTGTTGCGGCTGTTATTGTTTCTAGCACCATATTTGATTCATGCGTTTATTCTGTTGTTATTTATTGTTGCAAACAATTTTATCCGTGTATGTCTTTGTACTTTTACTGTTTTGTGTTGTTGTAATTTACTAACTTTTATTACCAGATGGCTTTAAAAAAACTTGACATGTGGGGGTAAAACTGCCACACGACATTATATTAAGAAGACCAGCTCAGCAGGTCGAGAAAACCCCTACCCCACTCATACACGGCGAAACCGTAGCCCATATAAGAACGACCGCGACTCGGGCTAGACCTTAGACCTGTGCTTTGGCGTGGGACGGACGAGGTGATTTTTTAAACCATGGACTAAAATTCGCTCCCACTGTTATGACTAGAGATGGTATTGGGGAATTGAGGATGGATTGGAACAGGGGATTGGAGGCTAGAACCCCGGCCGGGCAAGAAGAAGTACTATCCTTGTTCTTGCTTGCCTTAGACTGATACAATCCCTCACCTTATATAGAGAGGTTACCTTGGACTCTACGTAACTTGGACCCTAAGCAATAGATCTAATCTTCTAATCTTATCTCTAACTAATCTTATCTAATCCCCCTTGGAGGGCCCATGGCTGCTGCTGCCACATCCCCCTCCGTGGGCCTCCTTAGGCCCTGACACTCACCCCCACTGGACAAGCAGCTCGTTCTCGAGCTGCAACATTCAACAAACGACCTGTAAAGACCTTAGCTATCATCGAAAAATGAACCTTTTACATATCGATTGATTTTTTAATTTTTCTAGAAATATTGCAACTGCAAGCATCATCCTGTTTCCCAATGAAACGTTACACAACGAAGAGGAGGGCGTGAGCTGGAACCACGGAGGTAAAGACACAGCAACCTTCGGAGGCCCGTGGAGGTCGACGTTGGTGTTGCATGTAGCAAGTGGATCCCGTGCAGCGCAACACCTCTTGGTTCTGTGACCACCAGTGCACAGAGGGTGGCGTGGCTAGAGCAGAGGGTGGCAAGGCCACCAGATCCCCTTGTACGAAGGAGAGTAGTCGAGGTAGTTGCTCGGTCGCCACAGATGAGGGCCAGCGCCGGACAGAGCGATGCAGAGGGGCGTCGTGTCTTGCAGCCTCTCGTACGGTGAGGTGAACAACCACCATGTTGCTGGGCCGCGCTGGTGCAGTTACGACTCCCCGCAATGGAACATCGCCAACATCTGCTTCACTCGTCGACGCGCTAGTAAACCGCGTGCTGCAACCTGCAGGTGGACGATCGTCGTCGTCTGTCGTGGAGCAACCACACTCTGCTAGACGTCGCTCTTGGGGTCAAGGGTAGTGGTGATGGCTGCCCCTGATGACGGGGGCGGTGTCGGCGACGAGGACACGACAAACGTGGCAGCAGAAGTCGCCACTACCGCGAGGGAACCAAAGCGCTGCTGGCACATGATCTTGAACTGTGGCCACGTGACCTGATGCTCGCCGTGTTCCAGCCACTAGAACCACGTATGTGCGTGGCCCATGAGGTGATACTATGCCAACTAGGCCTTGTCGGACTCCAGGGTGCGCTGGCTCCAGAAGAACCGTTCGCTGTCGTTTAACCATCCCAGAGGGTCACCGCTGCCATCGTAGATGGGCAAGGAGTGGGGTGTTGCGGTCACTGGCATGGTAGCAGCAGCGAGGGTTGGCGCCGGGGGCTGGTATACCAGTCCTAGTATGGTTGCCCCTAGTGTCGTCAGCCATGCAGCCGATGATGAAGACAGCCTCGAGGGTGCAAAGCAACTGGTAGGCATCGCTGTTCACAAAGATGTAGGTGCCGAAACGGCCGATGACGACCAGGCCGTTATTGGCGTGCTGCTGGAGAGCGCCATGCTGATGGTGTTGAGCCATTGAGCCACGCAAACAGATTGTCGAAGTACACCTCGGGAACCTAAGCAAACAGAATGTCGAAGTACACCTCGGGAACCTAAGGACCATGAGAGACAGAGGTGTGGTCGTGGGCCGCTCGTACTGTGTGACGTTGGTGTCAGGGTTCCAGTAGTAGAGGTAGCTGGTGATGTCGTCGACGAGCCCGCGCCATGGCTTGGGCAGCGATGGGTCTTTCAGCGCGTACCACGGGGGCTACACGCCCGAACGAGCCACTACCGCGCGACATCGGGTCCGATTGGGTCTAGGAAACCCGCTGTGGCGCCCACAGCGTGGTGCGGAGGTGGCGCCCGGCGGCGTGGGGCAGAGGCGTCCTGATGGTGCAGAGGGTGTCGCAACCTGCCGGCATGGAGGTGGAGGGCGGTAGCGGACCCAGATCAGCGAGGCCTCTGGCGTGGAAGTGGCCTGGCGGGGGGCGCAGAGTGGGTCGCCGGGTTGCACACGAGGGATCACGCGTCGGCGCTAGCGGGTCGGCTGTATGCGCGCCGTTTGAGGTGTGGTGGTGAGTGACTACGTAGATGTGGCGGACGCACGATGGAGATGTGGTTGCGGCTACGCGTTGCGGGCGATCAGCGCAGGAACAGACGCGATGGAAGGGCGGTGGGAAAAAAATTGGCTCCGAATACTAGATTGTTTTGACTAGAGATGGGATTTGGGAATTGAGGAAGGATTGGAACATGGGATTGGAGGCTAGAACCTCGGCCGGGGGCCTTTCGCCCACGGCCGGGCAAGAAGTATTATCGTTGTTCTTGCTTGCCTTAGACTGATACAGTCACTCTCCTTATATAGAGAGGGTACCTTGGACTCTACATAACTTGGACTCTAAGCAATAAATCTAATCTTCTAATCTTATTTCTAACTATCCTTATCTAATCCCCTTGGAGGATCCATGGCTGCTGCTGCCACATCCCCTCCATGAGCCTCCTTAGGCCTTGACACGGGTAGTCGAATTTAGGACATGAGTGCTATACAGACCATCTAACCAACTTAGCTAGAGGCCTTTTAGCTTTACCAGACGGTCTTATTCTACAAAAAAATGAATTTTAATATCTAAGGGTAGTGCCTGTAGTTTTTGCACCATTTCGTTATAAGAATATAATAGAACCATTACGTTGAGTTTGCTCAAGAATCCAATTTACAGCTTTTTCTCATAGGTTGAAAATTATCTCTAAATGTTTGCCCTTCTTAAGTGTACATTATAAAAGTATTTTACTGTTTATGCAAACAATGCAGACTTGGCTCTTTGCAAGGGTTTAGGGTTTAGAGTAAGGGCAATTCATCTTGAATACAAGTTACACCTGGACAGGATATATATCATGCATCTGAATAAATCTGAAAACACATATAACAGTTTATTGCCGGTTCACTAACATACGTGGAGAAATGGTTATACAAATGTTTCTTCAATGCCTCATTTCTGAAAAACTGCATTGTCGTGTGATGGGTATTATTCTTGACGCATCAAATGCTAGGTGATGATTTGATAACTAGTTAACTTTTTCTCCAGGGCCGGCTTAAAATTGCAGATTTTGGATGGGCGGCTCGTTCAAATGCTAAACGCCACACACTCTGTGGCACAATCGATTATCTGGCACCAGAGATGGTAGAGAAAAAAGCTCATGACCATGCTGTGGACAACTGGACATTAGGAATCCTGTGCTATGAGTTCTTATATGGTTCACCTCCTTTTGAAGCTGATGAACAGGATGATACCTTGAGAAGGTATGGGCTGATAGATCTGTTTTTTCTCTCTTCCTGATCTTCATTCCTTATCATTTTGTGCCATGTGAATTTTGTGCAGGATAGTTAGGGTGGATTTGGCATTCCCTTCATCTCCTTGTGTATCTTCAGAGGCTAAGGATCTCATTTCCAAGGTGACATCTAAAAGTAGTGGTTATATAAGAGATTAATCAAAAGTGATGGGTGTTGCCTGAACTATTGATTGTTAAGTGTGATTGTGTATGCAGCTTCTAGTTAAGGATTCAAGCAAGAGGCTTTGCCTTGAAGACATCATGAAGCATCCATGGATAAAGAAGAATGCAGACCCTTCAGGCAGTTGCATTAAGCAAAAAGATGTCACAAGATCAAAGGTAAAACGATAAGTGAATATGCAAGATATCTTCTGAGCCATGGTGTTTAGTGTTCTTGTTCCTTGGAGATAACCATGGTGTTTAGTGTAAGTAGAAGCCAGCCTATGTACTGTGATCTTAGTTATGGACCATGTGTCGAAGTTGCTAAACTTCTGTTGCCTGCCTCATCTGGGGAGGCAATTAATCTTAGCTTTTGTGTGGATACAGTAGTTCCATATTTTTCAGCCCCTCTGTGATATATAGATGTTTGGCGGGTGGGCGCTTTTATTTTGCTATTATGGACTCATTGACATTGTGCTTCGGTAAAGAAATTTGGGCTTACCGTTGTAAAAAAAACACACTGGTGTTATCTGATTACTATGCTGAGTATGAAAAAAATATAAGTTAATTTTATTTTGGCCTCATTGGCATGGTATTCTTGCTTAGCTTCACATGTCTATTTTTTATCATATAGTTTGCTCTCAAATGCAAATAATAAAACTATGGATTACACTCACAAGAATAAGTAGCTAGTATATATTTGAATGTGATAAAACACTTCAATCCCAGCTCAGCTACTTGGTCTGGATAAAAGGACGACTTTTTCCTTTTAGTTTCTGATCAATCTGCATGTTCTTCTAGACGAGAAGGGCACCTTTTAGTTATCAGAAATAGATATAATGTGTAATATCAGTACGACATTCACAGCTAATTTGGTCTCGGTTTTCTCTACAGCTTCTGTAATATCAGTACAACGTGCTTGCCAGTGGGCAAGAACCTTCTGATGTGGTGCCAAACTCGTCACTACTGGAGGACAAATATAATGACCTGTTGTAGTTTTAAGTTCCGATAGTTCTGGAGTGGATTGGTGTGTGTGTGTATCCCTGCAGCTTTCTCCTACAGGCTGGAGTTCTAGTTCTGATACAGCGTTTGTGTTACCCTTTTGAACTGAGTGGTGAAACCAATGTTCACTGGAGAGGAATGTAGTTTTCACTGAGTTGTTGAACCTTCGCGAATTGGAGGGTCAATGGTCTGTGGAGATTGGAGAGGAACGTGGCTTTCGCTGTGGCGATCGTATTTTGTAATTGTCGAATCTACAGTATTTTGGTCTTTAGCAATGAAATATGGAGATGCCCGTAGTTTTTCTATGACGCGAAAAGGGAGGGAAAAACTGGTAATTTCAAATGGCCATATATCTATTATTCTGAGTTTAA

Promoter(up TSS 3kb):

>GRMZM2G037617_promoter

CCACAAGTTTGGTGTCTCTTGCCTCAATTACAAGTGAGTTTGATCGCAATGAAAGAAAGCCAAAGAAGAAAGCAATCCAAGCGCAAGAGCTCGAAAGAACACAAGCAAATCTCTCTCTCTAGTCACTAGAGCGTTGTGTGGAATTTTGAGAGGATTTGATCTCTTTGGTGTGTCTAGAATTGAATGCTAGAGCTCTTGTAAGTAGTTGGGAAGTGGAAAACTTGGATGCAATGAATGGTGGGGTGGTTGGGGTATTTATAGCCCCAACCACCAAACTTGACCGTTGGTGGAGGCTGTCTGTTCGATGGCGCACCGGACAGTTCGGTGCACACCGGACATGTTCGGTGCCCCAGCCACGTCACCAGTGCCGTTGGAATCTGACCGTTGGAGTTCTGACTTCTGGGCCCGCCTCGATGTCCGGTGGCGCACCGGACATGAACTGTTCAGTGTCCGGTGTGCCGGTATGGGCGCACCTGCCTTCTGCGCGCGCTGCGCGCGCATTTAATGCGTTGCAGGTAGCCGTTGGCGCGAAGTAGCCGTTGCTCCGAGGATGCACCGGACAGTCCGGTGCACATCGGACATGTCCGGTGAATTATAGCGGAGCAGCCTTCGTGAAATCCCGAGGCTGGCGAGTTCCGGAGCAGCGTCTTCGTTGGAGCATCGGACACTGTCCGGTGTACACCGGACAGTCCGGTGAATTATAGCGTGCCGGTTCTGGATTTTCCCGAAGGTGACGAGTTGGAGTGGGAGTCCTCTGGTGCACCGGACACTGTCCGGTGGTGCACCGGACACTGTCCGGTGGCACACCGGACAGTCCGGTGCGCCAGACCAGAGGAGCCTTCGGTTGCTCCTTTGCTCTTTTGTTGAACTCAATACTTGGTATTTTTATTGGCTAAGTGTGAACCTTTTGCACCTGTATAACTTATACACTAGAATAAACTAGTTAGTCCAAAGATTTGTGTTGGGCAATTCAACCACCAAAATTATATAGGAACTAGGTGTAAGCCTAATTCCCTTTCACCAACCGGAAAAGAAAACCAAAGAAGGCCATGGTAGAACATATTTGGAAGAATGGATTTACGTCGGGCTATACTCGGTGGATATTTCATGGTGAAGCGCATCGTACGAGAGAGGAGGTGCTGAGACAACGTGTCGAGGATTATGACGCGGATGCGGGGGTAGCAGATATGTTGAACGACTATCAGGAGGCACAGTACACGGGAGGATGTATGGATGACGAGCCAGAGCTGACTGCAAAGGCGTTCTACGACATGTTCGATGCGGCACAGAAGCCCCTTCACGGCCAGACAAAGGTTTCTCAACTGGATGCCATTGAGCGTGTAATGGCGTTCAAGTCGCAGTACAGCATGAGTAGAGACGCATTCGATGGCTTGTTGACGGTTATTGGGAGCCTGCTTCCAGATGATCACGTTCTGTCAAAGAGCATGTACGAGGCACAGAAACTCCTTCGTGCACTCTAGATGACGTATGAGCAGATTCTTGCTTGTCCGAAGGGCTGCGTGCTATTTAGGAAAGAATACCCTGAAGCTAAATACTGTCCCAAGTGTACATCTTCTAAGATCATGGAAGAAGACTCTGGTGATGTATTCTTTGCCGAGTGCTTCCGGGAAGACACTCGGCAAAGGTGAAGCCTTTGCCGAGTGTCGTCCTTGACACTCGGCAAAGAAGCCGTCTCCGTTACCTCGTCGCCGTAACGACCACTTTTCTTTGTCGAGTGCTCCCTGGCACTGAGAGCACCTAGAGGGGGGGGGTGAATAGGTGATCCTGTAAAACTTCAAAACTTAAGCCACAAAAACTTGTTAATGGTTAGCACAAGTATGGCCAAGTGGCTAGAGAGGAGTCAAAACACAATAACCACAAGAAATCAATCACAGAGATGACACGGTGGTTATCCCGTGGTTCGGCCAAGTACAAAAACTTGCCTAATCCACGTTGTGGCGTCCCAACGGACGAGAGTTGCACTCAACTCCTCTCAAGTGATCCAATGATCAACTTGAATACCACGGTGTTCTTGCTTTTCTTTTCTCAATCCCGTTTGCGAGGAATCTCCACAACTTGGAGCCTCTCGCCCTTACAAAAGATGTTCACAGAGAATCACGGAGCAAGGGAGGGATTAGCAACTCACACACGACACAAAGATCACAGCGAATACGCACACACAAGACCCAGACTTGAGCTCAAAAGACTAGCACACTAGAACGGAGCTCAAATCACTAGAATGTCGAACAAGTGCGCGAGATTGATGTGTGAGTGATCAAGAGTGCTCAAGGAATGCTTGGTCTACTCTTCCATGCGCCTAGGGGTCCCTTTTATAGCCCCAAGGCAGCTAGGAGCCGTTGAGAGCACATCTGGAAGGCTATCCTTGCCTTCTGTCGTCGGGCGCACCGGACAGTCCGGTGCACACCGGACACTGTCCGGTGCCCGATTTGTTTCCTTAAACAGCGCATCCAACCGTTGCTGTCTGAGTCAGATCTGCGCACCGTTGGCGCACCGGACATGTCCGGTGCACACCGGACAGTCCGGTGCTTCCTTCCGACCGTTGGCTTGGCCACGTGTCGCGCGCCGATCGCGCGGCCGACCGTTGGCCCGGCCGACCGTTGGCTCACCGGACAGTCCGGTGCACACCGGACTGTCCGGTGAATTTTAGCCGAAGTCGCCGGAGAAAAACCCGAGAGCGGCCTCTTCGGCCGAGGCAGCCTGGCGCACCGGACACTGTCCGGTGCACCACCGGACAGTCCGGTGCCCCAGACCGAAACAGCCTTTGGCTGTACCAAGCCACTCTCCTTTTCTTCTTCCTCCTGTTCTATCACTAGACCAGATGTTAGTATACTAAACTATGTACTTAGGGCTTGAAACCTTCTCTTTTCTTGTGATTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Transcript:

>GRMZM2G037617_T02

>GRMZM2G037617_T01

CDS:

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E32,E8,E25,E24,E25,E38,E28,E29,E38,	E38,E7,E12,E14,E21,E14,E15,E14,E21,E25,E38,	E25,E11,E17,E38,E37,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G037617_P01	PF00069.22	Pkinase	2	86	8.80E-17
GRMZM2G037617_P02	PF00069.22	Pkinase	2	86	9.10E-17

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT2G45490	3.00E-48
Arabidopsis thaliana	AT2G25880	2.00E-41
Arabidopsis thaliana	AT4G32830	4.00E-41
Oryza sative	LOC_Os03g55620	1.00E-58
Oryza sative	LOC_Os01g09580	1.00E-40
Oryza sative	LOC_Os12g29580	1.00E-18

7.Heuristic function module

Category	Family
GO	GO:0035175
GO	GO:0016772
GO	GO:0004672
GO	GO:0044022
GO	GO:0005524
GO	GO:0005819
GO	GO:0016572
GO	GO:0043988
GO	GO:0043987
GO	GO:0006468
Subcellular location	cytosol
Subcellular location	nucleus

8.Predicted function module

Category	Family
B73 Global RNA-seq network	B73RALLCFM151
B73 Global RNA-seq network	B73RALLCFM274
B73 Global Microarray network	B73MGSE27004CFM470
B73 Global Microarray network	B73MGSE27004CFM474
B73 abiotic stress conditional network	ABIOTICCFM47
B73 tissue specific conditional network	TISSUECFM151
B73 tissue specific conditional network	TISSUECFM362
B73 maize kernal conditional network	GSE62778CFM29
B73 maize kernal conditional network	GSE62778CFM473
B73 maize kernal conditional network	GSE62778CFM569
B73 maize development conditional network	SRP010680CFM12
B73 maize development conditional network	SRP010680CFM1147
B73 leaf section conditional network	SRP018823CFM6
B73 leaf section conditional network	SRP018823CFM284
B73 maize embryo and endosperm conditional network	SRP037559CFM116
Mo17 tissue specific network	MO17RALLCFM257