Gene Detail

1.Annotation (Gramene)

Annotation: Putative uncharacterized protein

2.Location

Chromosome	Strand	Region	Start	End	UCSC
2	-	gene	44959141	44964906	LINK

3.Sequences

Gene:

>GRMZM2G046900

ATGGCGTAAGCGTGGACGACTGAAGAACCGGATCGGCGTGCAAGTAGCTAGGACCGTGTACGAGTACGACGACTGGCTGTCGTTGGGGGCCGGGTGCTGCACAGCACTAGTGCCCCTGCCCCACACGGGAAACAGACGGAAACGCGATCAGAGAATTATATATCTGCAGCTCGCACGTCGCAGGTACGTACCAGTAGCAGCTGGCGCCGTCCGAGCTAGCTACCAGCAACAACTCAAACTCCACCAGAGAGACAATCTCCCATGATCGGCGCGGATCGGAGCAGAGCGGTCGTCTCGTCTCCCACTCCCAGCCAGGAGATCCATGCCTAGCTCGAGAGGAGGCGGACGGCAGAGCTGGTGGCGATCACGAGGTTTAGTTGGTGGAACGAATGATAGGCTAGCTGGGCCGTGTACAATTAATCCCTGCAGGCCAGCAGCGTGCAGTTAGCTCGGCGATCATGTCGCGCAGAGCTGTACCGAGATCTTCCGTGCCTTTTTTTTTTTGCTTCCGTGATCGAGCAGCAGATCCTCCGTGTCTGTGCCTGCCAGTGCCAGGTCAACAGGGTTTAGAGTTAAGGTTTACGGCCCGACCGGTCGGCGCCATGCACCCGTTGACTACCAAATATATTTCTAACCCGCTCGTGCACATGGGCCGGCGCTAGTGCGCGCTTTGCTGCTGCACATGGGCTGGCCCGCTCCGCGTGAAGTTGTGAATTGCCTGCCGGGTCGCTCGCTCTGAGCTGGCGCGCGTTTTGTACGCATGTGCCGGCTCGCTCCGCAGCTCGCGCACTCGCTCGTACGTTGACGGAGTCGCTCGTGATTCCGTGAGCTGCACACAGGACATGCACCCTAAACAAGGCCACAACTACACCATGTATATGCTTTGTATTTATTCCCTACATTCCAGGATATACTACATATGTTTAAAAACCAAAAAAATATATATTTAATTTTCTCTATATTACAGCATGGATGTACGTATCTTTAGAGACAACACACCTTATATCATGAGACAAAACTAAAAATTAGTTACATCATGTGATCGGCACCGCGACTTGTTTGCACGATATCAAGCGGGATGATAGCACCGAGCCACCGACAACCACTATGCCAAGTAGTGTTGACTCTGCGTCATTTGTTTTAGCTATTAAGACCGCGATGAACAATATCATGTACACGTTTGTTATGCTAAGAAGCACTAAACAGGTGGTCTTCAACCCATTTGCACTAGCGTTTTTTAGAACAATCGGTGTTAGAAGTCAGTAAAAACAATTATTTGCAGTAACTGACAAAACATATATAGGATCAGAACCAACCAACTTCACGTACACCAGTCCGATTCTGCACAACCTGAAAATCATAGCCGTCATGAATTGCAAGGTATGACAATATTCATACTCCTTCGTTAAATAAACCTGCAAGAATATAGATATAGTTTGTATAATGGCTTTCCATTCTCCCTTATAAGCATTGTACAACAACATAATAACAAACAAACACTTTAGATTCAATCGATGTTTTCATATTGTTTGTTTATAGATATCTGTTTTGCACACTTATAAAGGATGTCTACGCTGCTGGACCGCATATGCTTTTGTGTACAGATAATGAAACTGTTATAGTGTCTCCAGCTTTGTATATGTTTATGTGACTTCTACCAGTGAACTCTAATTTTGGTTTGATGTAGTCTACTCAAGTGTTACTTCATGTGTATTATTGTCTCATTTTACTCTACAGCTATTGTAAGCCTCTCATTTTACTCTACAGCTATTGTAAGCCTCGATGTCCGCTTCATTTTGGTTTGATACTTCTTTCCTTACATATTTTGTAGTTACAATTTTCACTTTAAATGTGATCACGCTACAGCATCTAATTTGAAATCCTCGTAAAAATATTTCAAGTCGTTGCGCAATTGTGATTATGAACTTGTAGAAAACACATGCTGAATTCTAATGTAGCTAGCTCTCATATCCTACCTCGTGTCACGACTCTGTGGTAGACAACCTCGTGCTTTAGAGCCTGTTTGTTTACCCCCAGATTATATAATCTCGGATTAAATAATCCTAAGAGGCAAACAAACAGTCCAGCTTATTTGCCGAGATTATATAATCTAACCCCTTGGATTATGATAATCCATAAGCAAGTGGGGAGGTGCTTATTTCAGATTATTTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCGTAGAAATTACCCACCATTACCATTATAACCCACCATTGGCATTCTTGTCTTCCTCATACAAAAGAATCCTATTAACAACTTAAATAATCTGGGTAAACAAACATGACTACTCAGATTATATAATCCAGATTATATAATCCTCCAAAAATAATCCAGATTATATAATCCATGGGGGTAAACAAACAGACCCTTACAACTCACGAGCATCCGTAGTGGAGTACTTGCTCGCAGTCCGAGCAACGACGACTTCTTGGACCCTGTTTGGTTTAGGATTCATTTTCAGAATAATCTGATTATTGACTGAACAGTTTGTATTGTACATTGGACTTTGTGCCCAGAACATCACAATCTTCATGTAAGCTTGGTAATCGCATTTGCATCAGATTTGGTGCAGTATCAGATTTCCCAGAATCTGTAGATTTCCGACCACGGTTGCACGAGCATCAGACTCGGACCATGCAAAGCTTAGCGTGTCAGTTGCAACTGGGCGCCGTGGCACCAACAGCATATGCACCGTTGCTTGGATTGGAGCTGGAGCAGCACCGATCAGAAGATCGAATCCACGCATGGTACTACCTCGCATCGGAGTGACGTGCACTTGCTAATACGACTACGACACGTGGATTTGCCAAGAGTGCAGAACCGGTCGTCCGGGTCCGGGCCGCTTGGCCAGTATAGTACCATGTCCGGATGTCCGAGAGCTGCCAACCGCTCTCACCAAATCTAACGGTCGAGGAGCCACAGTGCCACAGGTGGTCAAAGGCTATAGATCCTTGACTTTTCTTTAGACTGTCTGTAACGGTCTCGTCTAATTTTTTCCCCTCTATAGCGTACTATGCAGCCAACTCATTTAGATTTTACTCTCTATTTTCTCCTTTCTGCAGCATCGTTGGGGCCTTTCAATTTCCAGAACCGCAGGCAGCAGGATACCGTAGCTCCTCTGCATGGCGGCTACCGGATACCCAAATGCCGCCGCATGGTGCGTTCGAGTATGTGCGACTGTGCGTGCCCCGCTTGTCCGCTTCACGGCTGGACTGGTTCTGCAGCAGCTCTGCGCCTAGCCACCTACCAAAGCGAAAACCAGCCGTCCGATCTACCTTCCCAGTTCCACCGGTCACCTGGTGACGTACATCTACGTACCCACGAACCCCCGCGAGCCGCCCAGCGAACGTCATGGCGTACAGCCTCGACTCGAGCGTTCGTGGTCGTGGTCGTGGCCAGCACGAAGGCGCCACGACACGGGCGCGGCAGCCACAGCCAGTAGGCAGGGCAGCCAAACAGCGACAGGGCGCACGCGGTCCACACCCAACTGCACGCAGAAAACGGGCGGTCACCCATCCGCCCCCACCACGCCGCGGCCGCGCGCGGAATGGAACCATCATATATACCCACGCTCCGGCTCCGTTTCCGTTTCCAGGACACGGCCAGCCGGAACACCCGACAACCCGGACCAGAACAGCCGCGTCGAGGCGGCCCTCGAGACCCCCGGCCCCGACCCATCCCACCACCACCCCCACCCCCACCTCGCCTCCCGGATCCGCACCCGATGGGCAGCCTCGGCGGCGACGCGGAGCCGCAGGGCGCGAGGCGGCGGCCGCGGTTCCTGTGCCTGCACGGGTTCCGCACCAGCGGCGAGATCATGCGCAAGCAGGTGCTCGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGCAAGTCCGACGTCGAGGGCATCTTCGACCCTCCCTACTACGAGTGGTTCCAGTTCGACAAGGTCCGCCGCCGCGTACGCGCACGCGCATCCGCCCGCCCATTACCCGCCCCCCTCTCCTCCCCGATCTCGTCGTCCTGCTGATTTCGTCAAACTAATTGTGGTTTCCCTAGTTTTTTTTTGTGGTGCGCGTGTCGCTGGCTCGTGCGACGCACTTACCAACTTGACCTTTATAAGCACTTATTACTACCAAATTCCTTATGTACTGTACAACGCAAAACAGAGTTTTATGGAGTACAGGAATTTCGACAAGTGCCTGGCCTACATCGAAGAGCTGATGATAAAAGACGGCCCCTTCGACGGACTGATGGGTTTCTCCCAGGTAACAAGCCGCACAGCACGGGTTGAGATGAGACCACCTCCCCCTTCAATTTCTGTGGCGATGAACCAGCTGCTCGATTAACGGTTGCGAATTGTGGTGCGCCGATGTTGGTTCCAGGGTTCCATTCTGTCGGCGGCGCTTCCGGGGCTCCAAGAACAAGTGAGAGATCATGGTTCATACAAGACTCGAAGCAGAGCAGGTGGTTCTGTATTGCTTGCTTGCTAGTTCTTACTCTGTCGCCTTTGTGTTTTCGTGGCAGGGGCTGGCCCTGACTAGAGTCCCGAAGGTCAAGTACCTCATCATCATCGGTGGCGCTAAGTTCCAGTCACCCACGGTGGCCGGCAAGGCGTACGCCAACAAGATCGCATGCCCCTCGCTTCACTTCATCGGTACGTTACGTCAATGGCAACGCCGCGCATCATTCCATTGTCATGCCAAGTTTGTTTGTCCGGTTGCGTTCAAGCGTTGCGTTGGTGGAAACGTTATGGCGTACTCACGTCGTCTCCGTATTCGTTGCTCTTGCCTGCCGGCTTCTCTTGTTAATTGAAAGAGACAGGGCTTGCTTTCGGCAATGTGCTGCATAATGCTGTCAAGAAAGGTTCAAGAAACCTGTGTCCACCATTAAAAAAAACCCAATTGAATATATGCCAACTTTGATTTCCGCATGGAAAATAATGTACGCTTTCGCCCTCCATCATGTCCACTGTTCTAGAATGCTTCGATTAGGTTTATTATAAGATGCACATGGTCCAATTCTCTAGTCATTTCTGTTCGTTATTTGTCTTGGTACCTTTTATTTAAATAGGCGAACCGGTGTATAGCTGACTACGAGGCACCACTCAAGTCTGAACACGTTTCCAAATTTGGTTGATGCAGGTGAAAACGACTTCCTGAAAGTCCATGGTGAAAAGCTGATAGAATCATGCGTGGACCCATTCGTAATCCGTCACCCAAAGGGCCACACAGTTCCGAGGCTCGGTAAGCTCCTCTTCTTCGGTCTAATCCCGCGTTTGAGACCCCCTTCTTCAGCCAAACGAGAAACTACGTACCTTGAACCAAAACCCTGGGTCATCTAGCACAAATATATTTTTTTTCCTTTTCGCCTCGATATATACGAACGGCAGTCAGCCAAACTAATTCCACAATGTATGGCTGTTCCATGGCGTGCAGATGACGAGAGTTTAGTGGTCATGCACCGTTTCCTTGAGAAGATTGAGGGGGAGGTACTTGAGTATTCGTCCAAAGATGTCAACGAAACCGAAGTGGGCATGTGATAAAGACTTTAGACCATTAGTACTTGATGTTGGCGAAAAGGCTATACTTGTACTATTTATTTACAGAATGAACATGTGATGTAACCTCGATTTTCATGAGGCATGATTATGAAAAATACAGAATAATTGTTTTATATTCTATATTACTTGAATCAGAATATCTATGTACCTTTGGTTCA

Promoter(up TSS 3kb):

>GRMZM2G046900_promoter

TATACAAATTTTAATCATATAACACCATATTTATTATAAAATAGGTGAAATTAATTTCATCGCCGTAAAACCATGTCAATCCGTTTCCAAGGTACTGGACAAAGCGAGTGAAACCACCATTGTAAGCGATTTATTTCATCTCCATCTTTTTCATGTATTTCTATGGGTTATTTATATGCAATTTTTAAGTCACATGCTAGCCTATAAAATTGTATCATGAAACTCTTGGTTGGAAGGTTGTTGGAGACAACCAAGTTGTGTCTAAATGATCGTGTAAATGATCATGTAAAATATTATTTTATATCATGCCTGACTCACTGTGCATGCGGCAGACTCTACCAAGAACCGAAGAAGGTGTCGATCTCCTCCACACGCCAAATTAAGGCAAACGATTTCCATCAATCGATCGGGCGCCTCAAAGATCCCACCGCTTCACGGTCTGAGAGGTTGAGACTTTGCCCGGCGACGAAACACTCTACACAGTTTTGTCGCTGGTCCGCCGCCACTGCACCTTCGTCGACGGCGACGACGACGCACGGCCATGCTTGCGAGCTCGTCCATGGGTGCTATGAATAAAACACGCTGAAAAACGGTCTCATCTGATGCGCCGTGCACATGTAAAGCGAGAGAGAGAGAAAAAGAAAGAAAGAAAGAAACTGAAGCGCCGCGCACACGTTTTCCGGGCGCCTGATGCATGGAATTATTGTGGCACTAACGATCGTCACTTTGGCATCAGCGATCGAGCGGCTGATTGGTGTCAAGGGTCCATGTCCAACTGGACGGACACGGACCAAACGTACCGTCTGGATCGCGCGGCGCCACGGCGGAGTCAGGACAAGCGTGCCGGGACCGTTCGAGCTCCTCCTATAGCTAGGTGATAGTACTGATGCATGGGTCGCTCTCGCTGATGCTATGAGAAAAAAATTATGGTCCACGACAACCTCTCTCTCTCTCTCGATCGTCTGCATAAATAGACCCCCGTCTCTTCTACTTTTTTCCTCCCCCGTGCCTCACGGTCGACAGCTACCTGGCCGAGCCACCATCAAAGCGCCAGTACACCAGTACCTATGCATTGCTAGCAGCTAGCTCGAGTCCGCTCCCACCGTACTCACTGCCAGTGCCACACCACGCGTACGCCATGGCGCCGTCGCCGGTGGCGGGCGCGCACGGCGAGGGCGCGAGCGCCGGCGCCGTGTGCTGCATGTGCGGCGACCGCGGCCTGCCGGGCGAGCTGTTCCGGTGCAGGTGCTGCCGCTCCCGGCTCCAGCACAGGTACTGCAGCGACCTGTACCCGAGGGCGGCCGCGTACCGGCGGTGCAACTGGTGCCTGCGGGAGCCGGGGCCGGGGGTCGGCCAAGCGGGCCTGGGCCATGCCCATGCCGCGGCGGTATTTGCGGCTAACAACAAGCCCGAGGATGATAAACAACGGAAGACCACGGCGGCGGCGTCGGACGAGGAGCGGCGGCTGCGCCACGACCACGATGGGTGCTCCCCCTCCCCGAAGAGGTTGTCGCCGCCGCGGCCGCCTGCGGAGCTCGGACACCCGGTGAAGAAGAAGCACAGGGCCGAGGAGAAGACGCCGCAGCCGCCGCCGGCGGTGGCGGCTAACAACAGGCCCGAGGATGATAAACGGAAGACCACGGCGGCGGCGTCGGACGAGGAGCGGCCGCGGCAGCGCCACGAGGGGTGCTCCCCGACCCTGAGGAAGTCGTCGCCGCCGCCTGCGGAGCTCGTACACCCGGTGAAGAAGAAGCACAGGGCCGAGGAGAAGACGCCGCCGGCTGTCGCGGGGAAGGTGCGGGTGAACAGGGTCTGCAGGGTGCGGCGGTACAAGCTCCTCGCTGAAGTCATCAGCTGCTGATAAGCTAGTACTCCTGCCGACAAAACATCGAGAATTAACCATGTCTGTATAGATGACCAATAAACACGAGACTCGCGAGCCCGGCACGAAGCCCGCTGTTTGACCCGGTTTGAGCCTGGCACGGTCCGGTTTTATGCGGTCTTAGGTCAGCCCGGCACGAATAAGCGTGCCGGGCTCGGACATGAAACTAGGCACGACGGGTTAGCCCGGCACGACTCGTTTAACTCTAAGCCCGTTAAACCCGTTTTTTGCACTAAAACGTGCTTATCGGCCCACATAACCCGCTTGTCGACCCGTTTTTTCGTGCTAAACGGATCCAGCTCGTTTAGGCCCGCCGCGGACCGGAGTCGGACAGGAAATTAAGCCCGCATGCTTAAACGGCCTAGCCGGTTTTCTAACCGTGTCTGGCGGGCCGGGCCGGGCCGAACGACCCGTTTGGCCATCTGTACATGCATGTAGTCATGTAGAGGAAGAAAGACGAACTAGGATGGACCAATCGATCGACCCCCTCCCCACCTAATACTCAGTAACGTACGTAGTCGACGACGTATACATATATATATGCCCTGTTTGTTTAAGATCAGAGTTACCATATGTTCGGAAGTCTCAAGTCGATCAGTGTATTATACTGCTACGTACAGAAAGCTAGGTTTGTGTCCGAATACCGGAATCAAATAAAGATCACGCACGAGGCACGACCAGCAAACAGTGAACTCAAATCGTCTTCGTCGTCTATACAGTTATAGTTGCGTTGCTCTCCGTCGCAACGATGTAGATAACATACTCTCTATAACAACATTCATATTACTATAGTAAATCTTTATAATGGTGTGTCTATATAAACATCTATAACTATTTTTTAAAAATAATTACATACCCTCTTCGTACCACCTTGTTTTCTACGTATAGAATTGCTCCAGATTTATAGCATCACTCTCTTTTCATTTAATTTCTTGATATGACACGGTACCGTTACGGCGCCCTTGCTCGAGCGAGCATAAGGCTAATGCTCAGCTAGGTGCGGAATTTCCACGTGCCCGAGCCCACACCGAGCTTTTTATATATTGCTAAACAAATAGAAATAATCACAAGAAGAACCCAGGTACATGTGAATAATATCAGGTTCGCTTAATAACACG

Transcript:

>GRMZM2G046900_T03

>GRMZM2G046900_T02

TTTTTTTTTGTGGTGCGCGTGTCGCTGGCTCGTGCGACGCACTTACCAACTTGACCTTTATAAGCACTTATTACTACCAAATTCCTTATGTACTGTACAACGCAAAACAGAGTTTTATGGAGTACAGGAATTTCGACAAGTGCCTGGCCTACATCGAAGAGCTGATGATAAAAGACGGCCCCTTCGACGGACTGATGGGTTTCTCCCAGGTAACAAGCCGCACAGCACGGGTTGAGATGAGACCACCTCCCCCTTCAATTTCTGTGGCGATGAACCAGCTGCTCGATTAACGGTTGCGAATTGTGGTGCGCCGATGTTGGTTCCAGGGTTCCATTCTGTCGGCGGCGCTTCCGGGGCTCCAAGAACAAGTGAGAGATCATGGTTCATACAAGACTCGAAGCAGAGCAGGTGGTTCTGTATTGCTTGCTTGCTAGTTCTTACTCTGTCGCCTTTGTGTTTTCGTGGCAGGGGCTGGCCCTGACTAGAGTCCCGAAGGTCAAGTACCTCATCATCATCGGTGGCGCTAAGTTCCAGTCACCCACGGTGGCCGGCAAGGCGTACGCCAACAAGATCGCATGCCCCTCGCTTCACTTCATCGGTACGTTACGTCAATGGCAACGCCGCGCATCATTCCATTGTCATGCCAAGTTTGTTTGTCCGGTTGCGTTCAAGCGTTGCGTTGGTGGAAACGTTATGGCGTACTCACGTCGTCTCCGTATTCGTTGCTCTTGCCTGCCGGCTTCTCTTGTTAATTGAAAGAGACAGGGCTTGCTTTCGGCAATGTGCTGCATAATGCTGTCAAGAAAGGTTCAAGAAACCTGTGTCCACCATTAAAAAAAACCCAATTGAATATATGCCAACTTTGATTTCCGCATGGAAAATAATGTACGCTTTCGCCCTCCATCATGTCCACTGTTCTAGAATGCTTCGATTAGGTTTATTATAAGATGCACATGGTCCAATTCTCTAGTCATTTCTGTTCGTTATTTGTCTTGGTACCTTTTATTTAAATAGGCGAACCGGTGTATAGCTGACTACGAGGCACCACTCAAGTCTGAACACGTTTCCAAATTTGGTTGATGCAGGTGAAAACGACTTCCTGAAAGTCCATGGTGAAAAGCTGATAGAATCATGCGTGGACCCATTCGTAATCCGTCACCCAAAGGGCCACACAGTTCCGAGGCTCGGTAAGCTCCTCTTCTTCGGTCTAATCCCGCGTTTGAGACCCCCTTCTTCAGCCAAACGAGAAACTACGTACCTTGAACCAAAACCCTGGGTCATCTAGCACAAATATATTTTTTTTCCTTTTCGCCTCGATATATACGAACGGCAGTCAGCCAAACTAATTCCACAATGTATGGCTGTTCCATGGCGTGCAGATGACGAGAGTTTAGTGGTCATGCACCGTTTCCTTGAGAAGATTGAGGGGGAGGTACTTGAGTATTCGTCCAAAGATGTCAACGAAACCGAAGTGGGCATGTGATAAAGACTTTAGACCATTAGTACTTGATGTTGGCGAAAAGGCTATACTTGTACTATTTATTTACAGAATGAACATGTGATGTAACCTCGATTTTCATGAGGCATGATTATGAAAAATACAGAATAATTGTTTTATATTCTATATTACTTGAATCAGAATATCTATGTACCTTTGGTTCA

>GRMZM2G046900_T01

>GRMZM2G046900_T04

CDS:

>GRMZM2G046900_T02

>GRMZM2G046900_T01

>GRMZM2G046900_T03

>GRMZM2G046900_T04

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E4,E5,E4,E3,E11,E3	E3,E11,E1,E24,E25,E11,E6,E3,E5,E4,E7,E4,E6,E11	E17,E11,E25,E19,E20,E20,E17

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G046900_P01	PF03959.10	FSH1	104	295	1.20E-43
GRMZM2G046900_P02	PF03959.10	FSH1	2	124	5.50E-30

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT4G24380	2.00E-99
Arabidopsis thaliana	AT5G65400	9.00E-86
Arabidopsis thaliana	AT1G09280	3.00E-14
Oryza sative	LOC_Os04g37710	5.00E-139
Oryza sative	LOC_Os07g48770	2.00E-74
Oryza sative	LOC_Os12g37630	1.00E-05

7.Heuristic function module

Category	Family
GO	GO:0005777
Subcellular location	cytosol
Subcellular location	endoplasmic reticulum
Subcellular location	golgi
Subcellular location	mitochondrion
Subcellular location	plastid
Subcellular location	vacuole

8.Predicted function module

Category	Family
B73 abiotic stress conditional network	ABIOTICCFM289