Gene Detail

1.Annotation (Gramene)

Annotation: Uncharacterized protein

2.Location

Chromosome	Strand	Region	Start	End	UCSC
8	+	gene	124996326	124999871	LINK

3.Sequences

Gene:

>GRMZM2G048117

ACGCAAATGGTAAAACGCTTGGGAAACACAATTCAGCCCTGGCCTTTTTCCAGTTGAGTTCACCTCTTGGCTCTTGCCTCCTGCATCTCTAGAGAGGCACATCCCAGCTCCAAGCTTCGCGCCTTGTTGGATCGTGGCGTCCAAGCAACGGTGGTAGCGGAGCGCGAGGCAGTGGCCGCAGAAGGAAGCGCGAAGCATCCATGGACCAACGCCAGGTGGGTATTCCCATTTCGTTCATCCGTCTTTTTTCTCTCCATCCTCTGGGGAAGTTTGAATCTGAGCTTTCTCCTGCGTTCCCGATCTTCCTCGGAATTGATCTCGCCTTAGGAATTGCCCCATATCCGTTGTCGGTTCTCGGATTATGGCTCGCGAGTTCTGGTTCGGATTCGGGTGGATCCATTTAGGCTTGGAATGGCGCGTGGATCTCAGTTAGGCTGTGAAAGGGGCTTGGTGTGGCACGGGATCTGAATTAGTGAACCAATATTTAGTTTCTGGGATAGTAGGATGCACGATGCAGTTGTATTGGTTTCTTGGGATGGATCGGGCTGTCGGTGCTCTTTAGCTTATAAAATTCCCTGCTCAGTTGAGATCTGATTATTATCCGTCCAAACAAATAATGGCGTCAACATTGTTCAGGTGGTTAGCGAGAATTATGCCAATCCCATAACATGCTTCTTCCATGTGCTATTCAAGGTAATCCGCTTGCTATCTCATGGATCTTACATCGTGTTTCGTCGAATTATGGTATAGGGTAACGGTTTAACACTTACTAATTCTTATATGTTCGCTCTAAGGCGGGGGCGCTAGCCTTCTACATCCTATTCTCGCTCTTTGTGAAGAGCTTCGTCATCATCTTCGTGATCACGGTGCTCCTCGCAGCGCTTGACTTCTGGGTGGTGAAGAACGTCAGTGGCAGGATACTAGTCGGGCTGCGGTGGTGGAATGAGATCGATGATGACGGAAACAGTGTGTGGAAGTTTGAATGCCTTGATGGGGAGGTCTGTGCCTGCTTTGCCTGTGATGTTAATTGTATTCGTGTGTGAAATTGTTGCAGGTTGTAACTTGAATGTTCCCTGCAGTCTCTCGCTCGGATGAACAAGAAGGATTCATGGCTGTTCTGGTGGACTCTTTACTTGACTGTGAGTGAATTTTCTGTTATAATGAATGTCATGGTGTAGACGATAGACATCGTTGGATCGGTGTCATGATGTCTGAGATTACTTGATTACAAGTTGCTGTTTGTGACCATCTTTTTATGAACCAATAAGTCAAAAATTGTTTCATTAGGAGAGACCTGTTCAAACGTCGGGTCAGGTCGGGCCATTGGCTATTTAGCGTGGCCCATACCCGACTCGTGCCTAGTGTCGGGTTGGCCCATGCCTACTGTTTGACGTGTCGGGTCGGGTTTTTTCGGATTGGGTTGGGTTTTTTCGGGCTGGGTCGGGTTTTGGATTAAAAATCATGACATGTACCCAATCCGTGAATTGTTGCGGGTCAAAAATTATGGCCCGTACCCGCTTGTTGCATTGGTTGGATCGGATCGGGTCGGGCCGGATTTTTTTGGCGGGTCGGGTTGGGTGGCTCATGATCAGGTCCGAGGCTATGTATATTCACTTGGTGTTTATGCTACCTGTACAAATGCACTTGGCTATTTCATTTTTCCTTGTTCCTTAGCTGTGCTTGTCCATTATCTACTTAGTTATGTTTGATCCAATTTCTCTATTGTTTCCATTAACTTACACGATTTAAGTGTACAAAGTTCAACAAAATGTACCTAAATCCAATTGTGGTTTAATAACTATCGGGTATAAGTCTGGTTAACAACTTAATATAGGTGCAATATTTTGTCAACTTAACACTTGAAATTTGATAACTGGTACATCTTGCATGAATGAAAATTACTTGTAGTTGATTCTAGCTTATCAGTTAAAGCAGTCTTTTGAGAGGGAAAAAATAGCCCCTTTTGACTGTTCGTTCTCTCCCATGGTTCCAGTATACCACAATATGCAGTTATGCACTTAGTTGGGGGTTCTGTGATAGTATCTTTACCTCAACAAATGTTTGCTGATCTGTCTGCTCTCTTGAGAAGATGGAAGTCTTATCTTAAGTCTTAACATTGTAAATGATACCAGAGAAGGCTGTCACGTCCATACTTGAGGGTGGTCCGTTGAAGGCCTTTTATTGTCTATTCTATGTTTACCAACCGTGACAACTGATATGTATTAGAATATATATAAACAAAAACAAATCTCTTCATGTTTCAGGCTGCTGCATGGATCGTTCTTGGTATATTTTCACTCATCAGGCTTGAGGCTGATTACCTTCTTGTTGTTGGAGTTTGCTTGAGTCTAAGCATTGCAAACATTGTTGGATTCACCAAGTGCAACAAAGGTACGTCGTAATTGAGAAGTTTCTAGTGAAGATTTATTGCCCTAGTTATTTTACTCCGAACTGATTGTCCTTTCATAAACTGGTGATTGAATGAGATGGACTGTTTCCTATCAGCTAAGCATAATAGTTCTAAAGCTAATACTTTTCAGTTTTGTATGATTTTATATGTTCAATTATGTGTAGGGGTGGTAATGAGCTCTAAATTTTACACTACAAAATCTAAGGATCGAATTGGATTGAGATCGGGCTCTATTCCTATTTATTTTTGAGCTACCATTACCACCCCTAATTATGTGCAAGCCATTCAGCTTCTTGGTTTGCTGTCCATCATTAGAGTTTGGCATGTTACAGGAACAAAATTTCATCAGCTACATGCTTGTTTTAGATTTTTTAACCTTCACTATACCTGTACTGTTCTTCACAGTATTATGCTATTATTTGTTATAAAATAATTTTTATTTTAGCGTCCTGCCTTTTGATGTCATATGGGTCTAGTTGGGGTGGAGATAAAACTTTTACCTTGAGGACTAGTTTGAGAGCCACAAAACCGGAGAGAATTGGAGGGGCTAAATTCTCCTTCTTATTCAATTTTGAATAAGAAGGAGAATTTAGCCCCTCCATTCCTCTCCGGGTTTATAGCTCCCAAACTAGCCCTGAAAGTTCTCAACAACTCTGTACACAGCCTGAATTTCACCAAGTAAAATCTAACATTTGGCATTGCCATTACTGTTACAGATGCCAAGAAGAACATCCAGACTTTCGCTCAAAATGCACTCGCTTCCCGTGTCACATCATCGCTGCAATCAGCATTCGGTGTCATCTGAAGTCCCACGCGGAGGCCCTGGTATTAGTATATTACTCACAGCGGTGTACAATTTGTCAAAAGGATGAGCTTGCATTCTACGTTTACTGCCTTTCCTCTGATTGCAAGGATGTAATTCTACCAGCGTAGACAGCAAGCATATTGTACTGTCCCGTTATCATTCTTTTTTACCTCATACAACAAATAGGTCGATTTTGATGTCATTACCAGAATCCTTTGGTTTATCTCTTGGGTGATTTATCCATGAAGCATACACTTGTCTCATGCACTGAGGAGTCTGCATCAAGCGCTGTTTTTACTTTTTTTTTCTGGCCATGGAAATTAAAAGTACG

Promoter(up TSS 3kb):

>GRMZM2G048117_promoter

TCGGGCTGCGCTCCCGAGGTACCCTAGGACATTTCCGAGACCAGCGGGAACGATCTTGTAACGGAATCCCATCAGAGAGAGGCATCGAGCCCTCGGACCCCGTCGCCAGGGGACCGGGTCCGGCAGATCACCCACAGGTACTTTTGGGCGTGCCTCTGGGCCCCTAGCCGACCCCTAACGAACGGGGCACGGACGTCCACTCGGATTACCCGCTTGCAGCTCATCGGAGACACCATGTTCGGCGCCCATCGAGGGCAACATGGCGCTTTCCCCCCTCCTCCTTGCGGAAAGGCGACGCAGGGGCGTATGTAAAAAAGCCGAGTCTGCCCCTAACCGCCCTCTCGCTCTGTGCAGAGGCTCGGGGGCTTCTCTCGCAAACCCGGCTCCGGCCGAACCGTTGACAGCGTCAACATACCAGCCCGAGAACTTGGGACCCGACCGTACACCTGGGCTACGGCCAGCTCGCATGAGGGAACGACCAGACCAGCCGAAGCACTACGAAAGGCATTAAGACCTCGAAGGAGTGAAACCACTCCTCCGAGGCCTCGGGGGCTACACCCGGCGGGTGCGCTCGCGCGCACCCCAACCGGGAAACAAATGCAACCGAGAAAGGCTGGTCCCCTTGCAAAAAAGTGCGACGAAAGCCTCCAAGCGAGTGCAAACACTCCCTTCGAGGCTCGGGGGCTACTGTCGGGGACCATAATTAGGGGTACCCTCAAGGCTCCTAATTCTCAGCTGGTAACCCCCATCAGCACAAAGCTGCAAAGGCCTGATGGGTGCGAATAAGTCAGGGATCAGTCCATTCGAGGGACTCGATCACGCCTCGCCCGAGCCTAGCCTCGGACAAGGGCAGCCCACCCCGGAGGATTTCCGTCTCGCCCGAGGCCCCCCTTCAGCGGCGAACATATTTTCGGCTCGCCCGAGGCCCTGCCTTCGCCAAGAAGCAACCCTGACCAAATCGCCGCACCGACCGACCAAATCGCAGGAGCATTTAATGCGAAGGTGGCCTTACACCTTTATCCTGACGCGCGCCCCCCAGCCGGTAGAGCCGAAGTGACCGCCGTCACTTCGCCGCTCCACTGACCGGCCTGACAGAAGGACAGCGCCGCCTGCGCCACTCCGACTGCGGTGCCACTTGACAGAGTGAGACTGACAGATAGTCAGGCCCGGCCAAAGGCACCATAGGAAGCTCCGCTCCGCCCGACCTAGGGCTCGGACTCGGGCTAAGTCCCGGAAGACGGCGAACTCCACTCCGCCCGACCCAGGGCTCGGACTCGGGCTAAGTCCCGGAAGACGGCGAACTCCGCCCGACCCAGGGCTCGGACTCGGGCTAAGTCCCGGAAGACGGCGAACTCCGCCCGATCTAGGTCTCGGACTCGGGCTAAGTCCCGGAAGACGGCGAACTCCGCCCGACCCAGGGCTCGGACTCGGGCTAAGTCCCGGAAGACGGCGATCTCCGCCTCGCCCGACCCAGGGCTCGGACTCGGGCTAAGTCCCAGAAGACGACGAACTCCACTCCGCCCGACCTAGGGCTCGGACTCGGGCTAAGTCCTAGAAGACGACGATCTCCGCCTCGCCCGGCCCAGGGCTCGGACTTGGGCTCGGCCCCAGAAGACGACGAACTCCGCTTCGCCCGACCCCAGGGCTCGGACTCCGCCCCGGCACCAGCCGACGATCTCCGCCTCGCCCGAACCTGGGGCTCGGACCCGACCTCGGCCACGGAAGACAGACTCGACCTCGGCTTCGGAGGAGCTTCCACATCGCCCAACCTAGGGCGCAGACCAGCCACGTCAACAGGAGGCGCCATCATCACCCTACCCCGAGCTGACTCGGGCCGCAGGGAACAAGACCGGTGTCCCATCTGGCTCGCCTCGCCAGATAGGCAATGATGGCGCCCTGCATACTCTGTGACGACGGCGGCTCTCAGCCCCTATACGGAAGCAAGAGGACGTCAGCAAGGACTCAACCGCTCCGACAGCTGTCCCTCCGCCAGGCTCCATCGCTCCTCCGACGGCCACGACATCACACCAGCTGGGTGCCAAAATCTCTCCGGCTGCCACAACGGCATGTACTTAGGGCGCTAGCTCTCCTCCGCTAGACACGTAGCACTCTGCTACACCCCCAATTGTACACCTGGATCCTCTCCTTGCGCCTATAAAAGGGAGGACCAGGGCCCTCTTAGAGAGGGTGGGCCGCGCGGGGACGAGGACGAGACACGCGCTCGCTTGAAGCCGCTCGCTCTCTCTCCCGCGTGGACGCTTGTAACCCCCTACTGCAAGCGCACCCGACCTGGGCGCGGGACGAACACGAAGGCCGCGGGATTCCCACCCCTCTCACGCTGGTCTCCGGCCGCCTCGCTCTCCCCTCTTCGCGCTCGCCCTCGCGCTCGACCCATCTGGGCTGGGGCACGCGGCGACATTCACTCGTCGGCCTAGGGACCCTCCGGTCTCGAAACGCCGACACCTCTTACATCCGGGTGTGACAATAAGTTTGTTATCTTTTTTTATTCCTCACTTTTGTTAGTTTTTGGAATGATATAGATTAATCTATCATCATCTCATTCGTCCCAGATTATTGGTATATGCATGAGGATTGAGTTTAACATAATGCAAAGGGTGACACCATCTCACGAAAGCATGAAGTGATTTTACAAACTAAATATAACAATAATATATAAAAGACTATGTGCGTAAAAATCTTTAAAATATCTTATAATTTGGAGCGAATACAATAATATATTTTTTGTTTTATGTAAACTAAATCGAGGGCTAAACTTCACGTAGGGTGGACATACTCATCAATCACTTATGGCAATAGGGTCTAGCATTAAAAAAATTAGAATTATTTCGATTCGAAGGACATCCGAAACGATTTCTAGCCGAATTTCTTGTATATTTTATATAAGATTTGATTAATGAAAAAAAGTTGCTGGGTGAATTCCGATTTCCTACACAGACGAAACATCTCCTTAGCTTGCCGTACATTTTTCTTTTCTTCTTT

Transcript:

>GRMZM2G048117_T01

CDS:

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E19,E30,E20,E30,E19,E17,E19,E23,E5,	E5,E7,E14,E21,E22,E6,	E6,E13,E6,E4,E6,E25,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G048117_P01	PF05832.9	DUF846	13	152	1.50E-49

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT1G09330	8.00E-100
Arabidopsis thaliana	AT3G04340	0.71
Arabidopsis thaliana	AT1G26330	1.3
Oryza sative	LOC_Os05g06700	4.00E-118
Oryza sative	LOC_Os01g22870	1.00E-112
Oryza sative	LOC_Os01g08750	0.53

7.Heuristic function module

Category	Family
GO	GO:0005802
GO	GO:0016021
GO	GO:0009826
GO	GO:0007030
GO	GO:0009306
Subcellular location	endoplasmic reticulum
Subcellular location	golgi
Subcellular location	plasma membrane
Subcellular location	vacuole

8.Predicted function module

Category	Family
B73 abiotic stress conditional network	ABIOTICCFM24
B73 abiotic stress conditional network	ABIOTICCFM877
B73 abiotic stress conditional network	ABIOTICCFM934
B73 maize kernal conditional network	GSE62778CFM454
B73 maize kernal conditional network	GSE62778CFM650
B73 maize development conditional network	SRP010680CFM12
Mo17 tissue specific network	MO17RALLCFM144
Mo17 tissue specific network	MO17RALLCFM197
Mo17 tissue specific network	MO17RALLCFM649