Gene Detail

1.Annotation (Gramene)

not available!

2.Location

Chromosome	Strand	Region	Start	End	UCSC
1	+	gene	54534092	54536951	LINK

3.Sequences

Gene:

>GRMZM2G050077

ACCTCGATTCGCGCCGAGAGCCTTCCAGAGCAAAGAAGCCGGCCACCAACAAAACCCGACCCGACGACGACGAGCAAGTAGCTGCCAGAACCCAGCACAGCTCTACCCACCAATTCTGATTCTGGAAGACAGACAGTAGTCGATCGCATCGCATCGCATGGCGACGAGGCCGGCAGCGGAGGAGAAGCCGTGGGAGCTGGCGGCGCACCCGCGGCTGCCCAAGGGCAGGACGGTGGCCGTGGTGGTGCTGGACGGCTGGGGCGAGGCGGCGCCCGACCCCTTCAACTGCATCCACGTCGCCGACACGCCCACGCTCGACGCCCTCAAGAAGGTACGTTACGTTACGTACACGGCCTGGCGTTCGCTGAACTCTGCGCTCACGTGCGGCAGGCAGCTCCGGAGAGATGGAGGCTCATCAAGGCGCACGGGACGGCGGTGGGGCTGCCGACGGACGACGACATGGGGAACAGCGAGGTCGGCCACAATGCGCTCGGAGCGGGACAGATATACGCGCAGGGGTAACTAGATTATACCTCGACTTCGACTAGCTAGCTACCACTCTGCTCCCTTGTTAGACACGTATCATATACGCCATCTGAAAGCCAAACCGAAGCAGAATTAAAAAGCATGGCAAAAAAGAATCACTCGTATTATTAGTGAATGAATTGCCAATGGTCAGCCGGTCACAACATGCAGCGCGAAACTGGTCGATCTGGCGCTGGGTTCCGGGAAGATATACGAGGGCGAAGGTTTCAAGTACATCCAGCAGTCCTTCCAGGACGGCACTCTGCACCTCATCGGCCTGCTCAGCGACGGAGGCGTGCACTCCAGGTTCGACCAGCTGCAGGTCGGTCGTTGAACGCTGCATGCCATCGCTCGTACTCGCAACAGATTTCTGACGGTCGGTCGAGGCAGCTGACCGGCCGGTACTGTGTGTCGCGTGTTTCTTCTTCTTCTCTGTCTTGGCTCGTACGACGTGCAGCTGCTGCTCCAAGGTGCTAGCGAGCGCGGGGCGAAGAGGATACGTGTGCACGTCCTCACGGATGGGCGGGACGTGGCGGACGGCAGCAGCGTCAGGTTCGTGGAGATGCTTGAGGAGGACCTCGCTAGGCTTCGGGAGAAGGGCGTCGATGCGAGAATAGCGTCTGGCGGTGGCAGGATGTATGTGACGATGGACCGTTACGAGGTACGCTGACTACTAACACTGCTACTGTTCGTCAGCCGTACGTTCTGGTTCGGACTCGGAGCACCTACCTGTCGTCGTCTTCCTGCAGAACGACTGGCAGGTCGTGAAGCGAGGCTGGGACGCGCACGTCCTGGGCGAAGCCCCGCACAGGTTCAGGAGCGCGCTCGAGGCCCTGAGGAAGCTGAGGGAGGAGGACCCCAAGAAGGCCAGCGACCAGTACCTGCCCCCCTTCGTCGTAGTCGACGGGAGCGGGGAGCCGGTCGGCCCGGTGCGGGACGGAGACGCCGTGGTGACGTTCAACTTCAGGGCCGACCGGATGGTGATGCTCGCCAAGGCGCTGGAGTACGAGGGCTTCGACAGGTTCGACCGCGTCAGGTTCCCCAGGACGCGGTACGCCGGCATGCTCCAGTACGACGGCGAGCTCAAGCTCCCGCGCCACTACCTCGTTGCTCCCCCGGAGATCCAGAGGACGTCCGGCGAGTACTTGGCGCGCAACGGCGTCCGCACCTACGCTTGCAGGTAAAAATTGCTGCGCTTTTATGTTGATAGATTGTCTTGTGACGATCGAGTCGTTTGATTGCTGTGAATCGAGGCCTCAAATGTTGTCTTCTTCTCGTATGAACTGCGTGCAGCGAGACGGTCAAGTTTGGGCACGTCACTTTTTTCTGGAACGGGAATCGGTCTGGTTACTTCGACCAGAACCTGGAAAAATACGAGGAGATTCCCAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGGTATATAGTTGGTGGATTTAAAACATAGTACAGAGAACCGTCTTTAGAACACCAGACACTAATAGCGGAGGCGTTCTGTAGGTAAGGGTCAACATTGCAAACGGAGATATGGTTGGCCATACAGGAGACATGGAGGCAACCATTGTTGGGTGCAAGGCAGCTGATGAGGCTGTTAAGGTACATGTACATGGACTAGTGCGTCAAGCTTTGCGTTGCGATCACCTCTCTATCTTCCCGAGGGTTTTTCCTAGCTACCGATTGATCCAGTCTGTATCTTGTAGATCATCCTCGACGCCGTTGAGCAAGTGGGCGGCGTTTTCGTGGTGACTGCCGACCACGGCAACGCCGAGGACATGGCGAAAAGAGACAAGTCTGGAGAACCACTCCGGGACAAGGACGGCAAGGTGCAGACCCTGACTTCGCACACGCTGAATCCGGTAAGTTCATTCAGTCCATAGACGCATTGTCTCTCGGCGAATCGCACTCTTGATCGGAAGCCTGGAAACTGCAGGTCCCAATCGCGATAGGAGGCCCCGGGCTTGCGCCTGGCGTCAGGTTCCGTACAGACCTCGCAAGTGCCGGCCTCGCCAATGTTGCGGCGACGGTCATGAACCTTCATGGGTTTCAGGCACCCGATCACTATGAGCCAACGCTGATCCAAGTCGTCGACGAGTGATTTCCGCTTTGCTGGTTGCTGCGTTGCAGTTTTCAGACATTATCTGAACTAACTCCTACCACAGTTGTCCGGCATGTAATCGTACTCAAACTAGACTACCTGGGCAATTACCTGTGCCAATTACCGTGTCGAATGTTCAAAAATGTTTTCGTTAAGGCCTTGTTCGTTTGTAT

Promoter(up TSS 3kb):

>GRMZM2G050077_promoter

CAAGACTCTTAACCTTAAGGTTATTATGGGTTCAAACCCCACTAGCGTTTAATACTTTTTGTCTTTGTCGCTGATTTTTTTGTTGTCGAGATTTTTTCGTTTATGCCGCTGATTTGTCCGTCAAAATTTGTATATCATCTAGATTTTTTTTGCTTCATACGGTAATACTTAGATTTTTTTGCTTCATACGATTTTTTGACTGACGAGCAGGTAGTAGTCTAGGACTAGCTAGGTCTTGGAAGGAAGGGACGGAGCTTCATACGACGAAAGCAAATATACAGATGCTACTACTTCAATCTTTTAGCATCTCTTTAGCTCTTCACTTTACGGTAATACTTGTACCTAAAACCATCCCTAATTTCCTCTCCATACTCCCACGTTATATCCGGCATCTCACCTATAACACTGCAAATAATACTACCACATATTTTTTTATAACAACTATCATGTCAGTAATTATAACAACTACCATCTAATACAGTTAAAAAAATTCATAAATTAATCAATGCACTTACGTCTAACATTACTGTCAAGTAAATAATTAGGCAAATAATATTGATCTGTGCAAAGACGACGGCCGGTAGTTGAAGACTGAAACATGAAAAATGATCTGAAAACGTCCAAACTAGCTGTGGACTTCGACACCTTCGCATATCCAATCCGTACCCCCAAGATTTTCCCCGTTTTTATTGAGTTATTAGCTACTGCTAGTAGAGGACGCATAAAACAAAGTGACCATTTAACTACTCTCTAGAAAGCAGTTTCTGCGCACAGTGGTACATACACGGAGTGCTCCAATAGATTATGGGTCTGTTTGGTTGGGCTGTAGCTGTGGAAAAAGCTGCTGTGGGCTGTGAGCTGTGGAAAAAGCTGCTGTGGGCTGTGAGCTGTTAAAAAGCTAAAAACCGTTTGGTCGAAACCACTAAAAATCGTTAAAAGTTATTCGATATACGTTTTTACAGTTCCATCTAAAAGTCACTAAAAGCAGGTCCAGGGGTGCTTTCATTTTTGCACTGCGAGAAAGTCGGCTTTTAGAAAAAGCTGCTTCCTTCATCCAGCCCTTTGGTTTGGCTTTTGGCTTTTAGGGGACAAAAGCCAAAGCCAAAAGTCAAACCAAACACACCCTATGTGCATGGTCCTTGCGTCACGGAGTTTGAATAAACAAAAATAAAAACAAAAAATATCTAGATGAATAAACAAATCAGTCACAAAAACAAAAAAATCTAGATGAGAAATAAATTTGACGGACAAATCAGCAACATAAACGAAAATATGGATAACAAAAAAAATTAGTGACAAAGACTCTACCGACTGAACTAGACGAGCTTTGTCATTATACATCCGAGCTCGGCGCCATAGATCTTGGCGCCGAGCTCGGTGCCACGTCGGCGCCACGTCGTCTGAATTGAGGCAGCGCAACACGTACCTCGGCGCTATAGCCTATGGCGCCGAGATGTGTTACTTCGGCGCCATAGTCTATGTCGCCGAGCAAAGGGTTCAAAAACAACATTAAAATTTTTTAAGATCTAAACGTGAATTTTTTCCAATAAAAAGACAAAATACAAAAAGTTCGGACCACTCGATGTATTTGTATCGTGGGAGCTACGCTACGCCTACCGGTGGAAAGCCGATCCAGCTGCATGGACGCGCACTGAAAAATCTTGGTTGCGCGCCAGCGAGCGCACACAAATGCATTGCTCCACGTGTGCCGGTGCTGACATGCGTGGAGTAGATTTAAGGCCATGTTTGGTTATTATTGTCATCATCGTCGTTATTATTAGTGTTGTAACGAGAGGATCCTCCGGACAAGTGTAAGCCGTTTTGGCTCTCTCGTGCGTGCCAAGCGAAATCTCGACCACACATATCTTCAGACAAGAGAACCAACACACAGGTTTGAGCGTTATCGTTGTTGTTGTTGTTTTGTGACATCATGTTTTTCATGTTGTGTATGTGATCTCGACATAGTAAATCATATTTTATAGGAGTTATTACTCGCATCCGGCAGTTATTTGGAGTCTAGTAAAAAAAAGAATACAGCAGCGGGTTGCTCGACGGGCTCCACGTACCAGCGTCGCCAGTCGCCACATCGTGTGATCCGGGGCTTCAGGGGCCGATCTGCCGCCGTTTCCTTTCTTCGGGGCCCTGTGCGCAGCCCGTTGGGCTGCTCCTCGAAACGGCTGGACTTTGTTCGGCCAATGCCTTGAAGCGCAAGACCGCGAGCCCACGACGACCAAGCGACCCCACGTCACATCGTGGAAACAGAGTTTGAAATCACGGATCGTAGCCTCGTAGGTGCTAGTGCTACTAGGGCTAGTGCTGGGAATTGGACCGAGTCGGACCAGCCCGGTCCAAGCTCATCGTGCTTCGTGCCAAATGGCTTCAGGCTAACAAAACTCAAAAGATTTTTGAGTCGTGCCGTGTCAGCCCGAAATGTAAAAACAGTGGCACAACCCGGTTCTAAACCACGTTGTGCCTTCTTTACATCGTGCCGGCCCAAGCCCGGCCCGTGTACTTTACCACATAAAATCAAAACATTAAAACCATATAAAATTCATAGCTTACTAAATTAAAGATATTAAACAATTCTAGCATCATTTGACCACATAAACTCTAAATATAACAACAATATAAAGTTGATATCTTACTAAATTAAATAGATTGGGCTTAATTAGGCCGTGCCGGCCCAAGGCGGACGCATCTATGCGAGCCGTGCCGTGAGCCCGATGGGCCAGAAATTGAGGCTCGGCCCAAGCCTACCTTCGGACCGTGCTAGCTCGGTCCAAATTATTTCGTACCAGACCGTGCTTTGGGCTTTTATTTTCAGGCCGTGCTCATGCTGACCCAAAAAGCCCGGCCCATATTTCCAACACTAAGTGCTACTGCTAGGTGGGCAACGCAGCCGCCGAGTACTACAGGAGAACGGATAGCAGTCTCACGAAAAAAGAAAATGAGAGAACGCTCGTTCGTTACACCTGTACAGTGTACATATCATGGGTTAAC

Transcript:

>GRMZM2G050077_T02

>GRMZM2G050077_T01

>GRMZM2G050077_T03

CACCAACAAAACCCGACCCGACGACGACGAGCAAGTAGCTGCCAGAACCCAGCACAGCTCTACCCACCAATTCTGATTCTGGAAGACAGACAGTAGTCGATCGCATCGCATCGCATGGCGACGAGGCCGGCAGCGGAGGAGAAGCCGTGGGAGCTGGCGGCGCACCCGCGGCTGCCCAAGGGCAGGACGGTGGCCGTGGTGGTGCTGGACGGCTGGGGCGAGGCGGCGCCCGACCCCTTCAACTGCATCCACGTCGCCGACACGCCCACGCTCGACGCCCTCAAGAAGGTACGTTACGTTACGTACACGGCCTGGCGTTCGCTGAACTCTGCGCTCACGTGCGGCAGGCAGCTCCGGAGAGATGGAGGCTCATCAAGGCGCACGGGACGGCGGTGGGGCTGCCGACGGACGACGACATGGGGAACAGCGAGGTCGGCCACAATGCGCTCGGAGCGGGACAGATATACGCGCAGGGGTAACTAGATTATACCTCGACTTCGACTAGCTAGCTACCACTCTGCTCCCTTGTTAGACACGTATCATATACGCCATCTGAAAGCCAAACCGAAGCAGAATTAAAAAGCATGGCAAAAAAGAATCACTCGTATTATTAGTGAATGAATTGCCAATGGTCAGCCGGTCACAACATGCAGCGCGAAACTGGTCGATCTGGCGCTGGGTTCCGGGAAGATATACGAGGGCGAAGGTTTCAAGTACATCCAGCAGTCCTTCCAGGACGGCACTCTGCACCTCATCGGCCTGCTCAGCGACGGAGGCGTGCACTCCAGGTTCGACCAGCTGCAGGTCGGTCGTTGAACGCTGCATGCCATCGCTCGTACTCGCAACAGATTTCTGACGGTCGGTCGAGGCAGCTGACCGGCCGGTACTGTGTGTCGCGTGTTTCTTCTTCTTCTCTGTCTTGGCTCGTACGACGTGCAGCTGCTGCTCCAAGGTGCTAGCGAGCGCGGGGCGAAGAGGATACGTGTGCACGTCCTCACGGATGGGCGGGACGTGGCGGACGGCAGCAGCGTCAGGTTCGTGGAGATGCTTGAGGAGGACCTCGCTAGGCTTCGGGAGAAGGGCGTCGATGCGAGAATAGCGTCTGGCGGTGGCAGGATGTATGTGACGATGGACCGTTACGAGGTACGCTGACTACTAACACTGCTACTGTTCGTCAGCCGTACGTTCTGGTTCGGACTCGGAGCACCTACCTGTCGTCGTCTTCCTGCAGAACGACTGGCAGGTCGTGAAGCGAGGCTGGGACGCGCACGTCCTGGGCGAAGCCCCGCACAGGTTCAGGAGCGCGCTCGAGGCCCTGAGGAAGCTGAGGGAGGAGGACCCCAAGAAGGCCAGCGACCAGTACCTGCCCCCCTTCGTCGTAGTCGACGGGAGCGGGGAGCCGGTCGGCCCGGTGCGGGACGGAGACGCCGTGGTGACGTTCAACTTCAGGGCCGACCGGATGGTGATGCTCGCCAAGGCGCTGGAGTACGAGGGCTTCGACAGGTTCGACCGCGTCAGGTTCCCCAGGACGCGGTACGCCGGCATGCTCCAGTACGACGGCGAGCTCAAGCTCCCGCGCCACTACCTCGTTGCTCCCCCGGAGATCCAGAGGACGTCCGGCGAGTACTTGGCGCGCAACGGCGTCCGCACCTACGCTTGCAGGTAAAAATTGCTGCGCTTTTATGTTGATAGATTGTCTTGTGACGATCGAGTCGTTTGATTGCTGTGAATCGAGGCCTCAAATGTTGTCTTCTTCTCGTATGAACTGCGTGCAGCGAGACGGTCAAGTTTGGGCACGTCACTTTTTTCTGGAACGGGAATCGGTCTGGTTACTTCGACCAGAACCTGGAAAAATACGAGGAGATTCCCAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGGTATATAGTTGGTGGATTTAAAACATAGTACAGAGAACCGTCTTTAGAACACCAGACACTAATAGCGGAGGCGTTCTGTAGGTAAGGGTCAACATTGCAAACGGAGATATGGTTGGCCATACAGGAGACATGGAGGCAACCATTGTTGGGTGCAAGGCAGCTGATGAGGCTGTTAAGGTACATGTACATGGACTAGTGCGTCAAGCTTTGCGTTGCGATCACCTCTCTATCTTCCCGAGGGTTTTTCCTAGCTACCGATTGATCCAGTCTGTATCTTGTAGATCATCCTCGACGCCGTTGAGCAAGTGGGCGGCGTTTTCGTGGTGACTGCCGACCACGGCAACGCCGAGGACATGGCGAAAAGAGACAAGTCTGGAGAACCACTCCGGGACAAGGACGGCAAGGTGCAGACCCTGACTTCGCACACGCTGAATCCGGTAAGTTCATTCAGTCCATAGACGCATTGTCTCTCGGCGAATCGCACTCTTGATCGGAAGCCTGGAAACTGCAGGTCCCAATCGCGATAGGAGGCCCCGGGCTTGCGCCTGGCGTCAGGTTCCGTACAGACCTCGCAAGTGCCGGCCTCGCCAATGTTGCGGCGACGGTCATGAACCTTCATGGGTTTCAGGCACCCGATCACTATGAGCCAACGCTGATCCAAGTCGTCGACGAGTGATTTCCGCTTTGCTGGTTGCTGCGTTGCAG

CDS:

>GRMZM2G050077_T01

ATGCTTGAGGAGGACCTCGCTAGGCTTCGGGAGAAGGGCGTCGATGCGAGAATAGCGTCTGGCGGTGGCAGGATGTATGTGACGATGGACCGTTACGAGAACGACTGGCAGGTCGTGAAGCGAGGCTGGGACGCGCACGTCCTGGGCGAAGCCCCGCACAGGTTCAGGAGCGCGCTCGAGGCCCTGAGGAAGCTGAGGGAGGAGGACCCCAAGAAGGCCAGCGACCAGTACCTGCCCCCCTTCGTCGTAGTCGACGGGAGCGGGGAGCCGGTCGGCCCGGTGCGGGACGGAGACGCCGTGGTGACGTTCAACTTCAGGGCCGACCGGATGGTGATGCTCGCCAAGGCGCTGGAGTACGAGGGCTTCGACAGGTTCGACCGCGTCAGGTTCCCCAGGACGCGGTACGCCGGCATGCTCCAGTACGACGGCGAGCTCAAGCTCCCGCGCCACTACCTCGTTGCTCCCCCGGAGATCCAGAGGACGTCCGGCGAGTACTTGGCGCGCAACGGCGTCCGCACCTACGCTTGCAGCGAGACGGTCAAGTTTGGGCACGTCACTTTTTTCTGGAACGGGAATCGGTCTGGTTACTTCGACCAGAACCTGGAAAAATACGAGGAGATTCCCAGCGATGCCGGCATCCCCTTCAATGTCCAGCCGAAGATGAAGGCCTTGGAAATCGCGCAGAAGGCGAGGGACGCCATCCTGAGCCAAAAATTCGATCAGGTAAGGGTCAACATTGCAAACGGAGATATGGTTGGCCATACAGGAGACATGGAGGCAACCATTGTTGGGTGCAAGGCAGCTGATGAGGCTGTTAAGATCATCCTCGACGCCGTTGAGCAAGTGGGCGGCGTTTTCGTGGTGACTGCCGACCACGGCAACGCCGAGGACATGGCGAAAAGAGACAAGTCTGGAGAACCACTCCGGGACAAGGACGGCAAGGTGCAGACCCTGACTTCGCACACGCTGAATCCGGTCCCAATCGCGATAGGAGGCCCCGGGCTTGCGCCTGGCGTCAGGTTCCGTACAGACCTCGCAAGTGCCGGCCTCGCCAATGTTGCGGCGACGGTCATGAACCTTCATGGGTTTCAGGCACCCGATCACTATGAGCCAACGCTGATCCAAGTCGTCGACGAGTGA

>GRMZM2G050077_T03

>GRMZM2G050077_T02

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E19,E25,E11,E3,E25,E11,E3,	E3,E4,E3,E2,E4,E5,E13,E6,E4,E13,	E13,E11,E23,E26,E23,E17,E16,E32,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G050077_P01	PF01676.15	Metalloenzyme	147	364	6.30E-72
GRMZM2G050077_P01	PF06415.10	iPGM_N	8	142	2.10E-30

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT1G09780	0
Arabidopsis thaliana	AT3G08590	0
Arabidopsis thaliana	AT3G20475	2
Oryza sative	LOC_Os03g21260	0
Oryza sative	LOC_Os05g40420	0
Oryza sative	LOC_Os01g60190	0

7.Heuristic function module

Category	Family
KEGG pathway	zma00010
KEGG pathway	zma00260
KEGG module	zma_M00001
KEGG module	zma_M00002
KEGG module	zma_M00003
GO	GO:0046872
GO	GO:0004619
GO	GO:0003824
GO	GO:0030145
GO	GO:0005737
GO	GO:0006007
GO	GO:0008152
Subcellular location	cytosol
Subcellular location	nucleus

8.Predicted function module

Category	Family
B73 Global RNA-seq network	B73RALLCFM96
B73 abiotic stress conditional network	ABIOTICCFM37
B73 maize embryo and endosperm conditional network	SRP037559CFM12
B73 maize embryo and endosperm conditional network	SRP037559CFM34
Mo17 tissue specific network	MO17RALLCFM243