Gene Detail

1.Annotation (Gramene)

Annotation: Putative DNA-directed RNA polymerase family protein

2.Location

Chromosome	Strand	Region	Start	End	UCSC
5	+	gene	210051692	210059201	LINK

3.Sequences

Gene:

>GRMZM2G055567

GTACGATAAAGTGTATGTAGTAAGATGTACGATAAATAAAATGTATGATAATTAGGAAGTCTTTCTATTTCTTCGCAAAGTCCCTTCTTCAATCTTAGATTGAAAAAAGAATGCCCCTTAGGGACCTTTGGCTACGAAGATTTCTGACATCTTAGTCTCGTAGTTTTAAATTCCCGAATCGAATCGATTTAAATTAATAAAAGAATAAGGAAACGCTACCTCATCCCTATTGGTAGCCGTTTGGGCCACTGCCCACAAAACAAACCCTAGTTTGAGGGTAGAACTATGGTATGGATTCTCAAAATCCAGTATCGCCAAACCTAGTTACTCTCGTGCCCCAACTTAGGGGGGTACGAATTTGTCGAGTTTGATTAGTACTATAATCCTAAGTATTTTATTGATCAGGCGGCACCCAGATTTGAACTGGGGGTAAAGGATTTGCAGTCCCCTGCCTTACCACTTGGCCATGCCGCCAAAAAATCCGATCTAAAATCGAGAAAAGAGCAAGTATTCATTCACATTTTTTTACTAATTACTAAAACCTTTTTTTCTTTTATCTTGAATCTAATTCTACTTACTTTTTTAGAATCTTTTTCAAAAAATAGATTTCTGCTTTTTTGGATCCAGTTTCGCTTATTCTCCTCGATGGATTCTATCTTAAAACACACATTGCTAACACTAGAAAACTTCCCGCTTCTTTCTATTCTATTGAGATGACAAAGAAGAAAAGAAGAAAAAGTGGATTTCCAGTCGCAGGCTGCAAAATTCAGAACAAATTAGAACCATTAACTATAATATAATAAAATTAGAATATAATAATATAATTAACTATAATATAATAAAATAAAACTATAATATAATAATATAATAAATATAATATTATTATTATTTTTTGAATTGCAGTAGTGAACGACTCTTAAATCGGTATTCCCCCCCATTATTTTGAATGGCATAATAAAATAGAATAAGAATAAATGTTTCCCTAATCTGTATATAGGGAAACTCCAGGTCCGAACAGCATTATTATCTACAGATCCCCCTTATGTACATATTCCTATGGGGAATCGTGCTTTAATTTTTCATTGTATTAAATATCTTGAATAAAAAAAGAGGGAATTTGCTCTGATATAGATTATAGCCAGGCCTTCTTGGCCCACCTAAGTGCAATTACGATAAAAGAAAGGATATGTAGATAGGTGGATAACTAGATTGGCAAGTACTTAAAAAATAAAGTACTTTATCTTTATTTTAGGATTCTACAACGAAATCCTTTATTTTCTAGCAATTCTACTACTACGAAACAAAAAAGACCCTTCAAATTCTTTTTGAAAAAGAAACTAAGCCTGCTATTCTAAATCGAACTAAAGTCAAACTTTCTAGTGCTTATAAATTCTTATGGCTTTATCCCTTTCATAGAAAGGAGATAAAACGAGAAATCTTTGCTATCCAATCTTTTTAGAATATCATAAAGTTTCAGTGGCAGAATTTTTTTCTAGGACTGTTTTATCAATTCATTTTTATTCCATTTCAACCCCTGCTAAATTCGAACTTTCGTCGAAATCGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATTTGGAGTTCCCTATAATTTCATGTGATTCAGTAAACAGAATATGGATTCCATGATTGCTAGATTGATCCGTAGGGATTGATGAAGAGTGAGCTGATAATGGAATTTTTCTTCTATAAATAGGAAACTTAAGATTCAAATGCTCCGGAATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTCGAGGGATTTTGTAGATTCATTAATCAAGGCTTGGCGGAAGAACTTGAGAAGTTTCCCACAATTAAAGATCCAGATCACGAAATTGCATTTCAATTATTTGCGAAAGGATATCAATTGCTAGAACCCTCGATAAAAGAAAGGAATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTATATGTATCCGCGAGATTAATTTTTGGTTTCGATGTGCAAAAGGAAACCATTTCTATTGGAAACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTGATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAGGGAATTTCTATATATACCGGGACTATAATATCAGATTGGGGAGGAAGGTCGGAATTAGCAATTGATAAAAAAGAAAGGATATGGGCTCGCGTGAGTAGAAAACAAAAGATATCTATTTTAGTTCTATCATCAGCTATGGGTTCGAATCTAAGAGAAATTTTAGATAATGTTTCCTACCCCGAAATTTTCTTGTCTTTCCCGAATGCTAAGGAGAAGAAGAGGATTGAGTCAAAAGAAAAAGCTATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGTGGGGACCTGGTATTTTCGGAGTCCTTATGCGAGGAATTACAAAAGAAATTTTTTTCAACAAAAAATGTGAATTTAGGAAGAAGTTGGTCGACGAAATATGAATCGGAGAACTGAAATCTTGGATATCCCTCCAGAACAATACATTTCTTGTTACCACGAGATGTATTGGCCGCTACGGATCATTTGATTGGAATGAAATTTTGGAACGGGTATACTTGACGATGACGATATGAATCACTTGAAAAATAAACGTATTCGTTCGGTTGCAGATCTGTTACAAGATCAATTCGGACTGGCTCTTGGCCGTTTACAACATGCGGTTCAAAAAACTATCCGTAGAGTATTCATACGTCAATCGAAACCGACTCCACAAACTTTGGTAACTCCAACTTCAACTTCGATTTTATTAATAACTACTTATGAGACCTTTTTTGGCACATACCCCTTAGCTCAAGTTTTTGATCAAACCAATCCATTGACACAAACGGTTCATGGGCGAAAAGTGAGTTGTTTGGGTCCAGGAGGATTGACGGGGAGAACTGCAAGTTTTCGGAGCCGAGATATTCATCCGAGTCACTATGGGCGTATTTGTCCAATTGACACGTCCGAAGGAATCAATGTTGGACTTACCGGATCGTTAGCTATTCATGCGAGAATTGATCACTGGTGGGGATCTATAGAGAGTCCGTTTTATGAAATATCTGAGAAAGCAAAAGAAAAAAAAGAGAGACAGGTAGTTTATTTATCACCAAATAGAGATGAATATTATATGATAGCAGCAGGAAATTCTTTGTCCTTGAATCAGGGTATTCAGGAAGAACAGGTTGTTCCAGCTAGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAGATTCATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTATTGGAGGTTCTCTCATTCCTTTTATTGAGCATAATGATGCGAATCGGGCTTTAATGAGTTCTAATATGCAGCGCCAAGCAGTTCCACTTTCTCGGTCCGAGAAGTGCATTGTTGGAACTGGATTGGAACGCCAAACAACTCTAGATTCGAGGGTTTCCGTTATAGCCCAACGCGAGGAGAAAGATCATTTCTAGTGATAGTCCACAAGATCCTTTTATCAAGTAGTGGGAAGACCATAAGTATTCCTTTAGTTGCCCCATCGGCGCTCTAACAAAAATACTTGTATGCACCAAAAACCTCGGGTTCCGCGGGGTAAATCCATTAAAAAAGGGCAAATTTTAGCGGAGGGAGCAGCTACAGTTGGCGGGGAACTTGCTTTAGGAAAAAACGTTTTAGTAGCTTATATGCCCTGGGAGGGTTACAATTTTGAAGACGCAGTACTAATTAGTGAACATTTGGTATATGAGGATATTTATACTTCTTTTCACATCCGAAAATATGAAATTCAGACGGATACGACAAGCCAAGGCTCCGCTGAAAAAATCACTAAACAAATACCACATCTAGAAGAACATTTACTTCGCAGTTTGGACAGAAATGGAGTTGTAAGGTTGGGATCCTGGGTAGAAACTGGTGATATTTTAGTAGGTAAATTAACGCCTCAGATAGCGAGCGAATCGTCCTATATCGCGGAAGCTGGATTATTACGGGCTATTTTTGGTCTTGAGGTATCCACTTCAAAAGAAACTTCTCTCAAACTACCTATAGGTGGAAGAGGGCGCGTTATCGATGTGAAATGGATCCAGAGGGACCCCTTTGACATAATGGTTCGTGTATATATTTTACAGAAACGTGAAATCAAAGTTGGGGATAAAGTAGCTGGAAGACACGGGAATAAGGGGATCATTTCCAAAATTTTGCCTAGGCAAGATATGCCCTATTTGCAAGATGGAACACCTGTTGATATGGTCTTCAATCCCTTAGGAGTACCCTCACGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGGGATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCGGAATTATATGAAGCCAGTAAACAAACAAAAAATCCATGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGATCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATTCATGGACGTTCTACTGGGCCCTACTCACTTGTTACCCAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCGCCAAGAAATACTTAATGCTACGATCTGGGGAAAAAGAGTGCCTAATCACGAGGATCCGCCAGAATCTTTTCGAGTGCTCGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTGAGAAGAACTTCCAGGTTAATAGGGAGGATGTTTGATCGGAATAAATATAAATTTTTTTCTTATTTCTATTTTATGATTGACCAATATAAACATAAACAACTTCAAATTGGACTCGTTTCCCCTCAACAAATAAAGGCTTGGGCTAAAAAAATCCTACCTAATGGGGAAGTCGTTGGCGAAGTCACAAGGCCCTCCACTTTTCATTATAAAACCGATAAACCAGAAAAAGATGGATTGTTTTGCGAAAGAATCTTTGGACCCATAAAAAGCGGAATTTGTGCTTGTGGAAACTCTCGAGCGAGCGTAGCTGAAAACGAAGACGAAAGATTTTGCCAAAAATGCGGGGTAGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGATACATCAAACTAGCATGTCCAGTGACTCATGTGTGGTATTTGAAAGGTCTTCCTAGTTATATTGCGAATCTTTTAGATAAACCCCTTAAGAAATTGGAGGGCCTAGTATATGGTGATTTCTCTTTTGCTAGGCCCAGCGCTAAAAAACCTACTTTCTTACGATTACGGGGTTTATTCGAAGATGAAATTTCATCCTGTAACCACAGTATTTCTCCCTTTTTTTCTACCCCAGGCTTTGCAACATTTCGAAATCGGGAAATTGCAACAGGAGCAGGCGCTATTAGAGAACAATTAGCAGATTTAGATTTGCGAATTATTATAGAGAATTCTTTGGTTGAATGGAAGGAATTAGAAGACGAGGGGTATAGTGGAGATGAATGGGAAGATAGAAAAAGACGAATAAGAAAAGTTTTTTTGATTAGACGCATGCAATTGGCGAAACATTTTATTCAAACAAATGTAGAACCAGAATGGATGGTTTTGTGCTTATTACCGGTTCTTCCTCCCGAATTGAGACCCATTGTTTATAGATCTGGGGATAAAGTAGTGACTTCAGATATTAATGAACTTTATAAGAGAGTTATCCGTCGGAACAACAACCTTGCCTATCTATTAAAAAGAAGTGAATTAGCACCAGCAGATTTAGTAATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCGACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAGGGTAAAGAGGGGAGGTTTCGCGAGACTCTGCTTGGGAAACGGGTCGATTACTCGAGGCGTTCTGTCATTGTTGTGGGTCCTTCGCTTTCATTACATCAATGTGGATTACCTCTAGAGATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCACGATTTAATCACGAAACGTGCTACTTCTAATGTCAGGATTGCTAAAAAGGAAAATTTGGGAAAAGGAACCCATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGACATCCTGTACTGTTGAACAGAGCACCTACCCTGCATAGATTAGGCATACAGGCCTTCCAAACCCACTTTAGTAGAGGGACGTACTATTTGTTTACATCCATTAGTGTGTAAGGGTTTCAATGCGGACTTTGATGGGGATCAAATGGCTGTTCACCTACCTTTATCCTTGGAAGCTCAGGCGGAAGCCCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTCCCGCTATTGGAGATCCTATTTGCGTGCCAACCCAAGACATGCTTATCGGACTTTATGTATTAACGATTGGAAACCGTCTAGGTATTTGTGCAAATAGATATAATAGTTGCGGAAACTCTCCAAATAAAAAAGTAAACTACAATAATAACAATTATTATAAGTATACGAAAGATAAAGAACCCCATTTTTCTAGTTCCTATGATGCACTGGGAGCTTATAGACAAAAACGAATCGGTTTAAACAGTCCCTTGTGGCTCCGATGGAAACTAGATCAACGCATCGTTGGGTCAAGAGAAGTTCCGATTGAAGTTCAATATGAATCTTTTGGGACTTATCATGAGATTTATGCCCACTATCTAGTAGTGGGAAATAGAAAAAAAGAAATCCGTTCTATATACATTCGAACCACTCTTGGTCATATTTCTTTTTATAGAGAAATAGAGGAAGCCATACAAGGATTTAGTCGGGCCTATTCATACACTATCTAAACAAGGAAGTTAGATTCGGCGATGCCCCTTTCGGGGGGCATTCCGATTTCGCTAGTACCATCTTTTTTGCCGCGCAAATCCAGATTGAGATTGAGGAAAGGGAGTAAATTAAGTTTTCGAATCACTGACTCAGGCCCATTGTCGAATCCTACTCAGCAATTGTCGAATCCTACTCAGCCAAAAAAAGGGGGTACTTATGTATGGCAGAACGGGCCAACTTGGTCTTTCATAATAAAGAGATAGACGGAACTGCTATGAAACGGCTTATTAGCAGATTAATAGATCATTTCGGAATGGGATATACATCCCATATACTGGATCAAATAAAGACTCTGGGCTTCCATCAAGCCACTACTACATCGATTTCTTTAGGAATCGAGGATCTTTTAACAATACCCTCTAAAGGATGGTTAGTCCAAGACGCGGAACAACAGAGT

Promoter(up TSS 3kb):

>GRMZM2G055567_promoter

CTTCGTGAATATGAACTAAATCTATTTTTTTATGGAAGAAAAAAGATGTATTATCTATAGAAATAAAGGATAAAGAGAAACGGGGAAATTGATTTCTAATCCGTATCTCTCTGATTCTTTGTCTTACAAAGAAAAGACAAAGAAAAGAGCTTTTCTTATGGAAAAGCGGATTATCGTTTATTTTTAGGGATAAAAAATCGCAACATACTAGTTATGCCACTCTCACTATACCCGCATAGGATATGCGGGTATGTAGTATATGATTCGTCTAATTCTTAGAGCACGACAGACGGATCGAATCTTCTATTTAAGAATAGGCATGCCATACACCCCGCAGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGAACTAGGGTTCAATGAATGGACAAATTCATCTTTTCTTTTTTCATGGAAATTTTTGATGAAAAAAGGGGGGGGGGACAGGAGGCAAGATCAAATATCTATGGGGCACCCTTACTTCACTTTTATTTTTTTGCATTTCTCAGTAAAAAGAGAGCAGTGCAGTATAGAATTTTTTTTGCACTACTTCCGGTTGATAAGGAAAGGCATACATATCATACGTGGATTAGTATAATTTAGGATACTACTCCATTTTTATGATGATACCACCCTCATCTTAACTTCCTATTCGACTCTTATGAAATCGAGTACCGGTATTTTACCGGAATCCATACATAAACCGTATTCGTTTATTGTTAGAGAATGAATTTCATCTAATTAGTTACTTTTTGGGGGTTAAACCGCACCCCTTCCATTTTCTAGTTCCAACTTTGTTTGTGTATATAATTGGAAAGAATCCACCTCATTCTCACTCCATTTGCCGACTCCTTTTTTTATGGATTTGCTCTCATCTTTAGACCCCAAAAAGCGTATATGGATAGTAACCTAATAAAATAAAAACCAAGCAAACGCTCTTTTTCCTAAATTTAAATATGGGATCCTTTTTATTTAAGATCCTCTTTTCTCCATCTCATTTCTACTTCTACTGCTTATTGGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGGAAGTGAAATTGGATAAGATAAGAAAGATTTTGGGTTATACATATAGAAAAGCAAAAGTAGAAAAGAATGAAAAAAGAATAGAGGGGGTTTCGAATCCAATCAAAAAACCTATTTTGGTCTTAGTATGGATAAGAGATCTTCCTATGTTATATTATTCCACTATCCACCATGAATTGATTTGATAGATGCAATATTCATAATATTGAATTGATTCAGTATTATCAGAATGCAAGTCCTCCCCTTGAATTTACAGGATACCCCTTTTTCCTCTCCATGGGATTACATCCCGAGTTATTGTGAAAAAAATAAATAAATAAAGAGGTTATGGAAGTAAATATTCTCGCATTTATTGCTACAGCATTGTTCATTCTAGTTCCTACTGCCTTTTTACTTATTATTTATGTAAAAACAGCCAGTCAAAATGATTAATTGGAATTCCAATTAATCATTGAAGAAATGAAAAAGGGATTAAAGAAAATAAAAAATCCAAGTCTTAAATGAAAGGGTCTGGTTGGAATCATAAAGTGTGGTAGAAAGAACTACATATAGTTTTTTCTACCACACTTTAGATTCTTTCTATTATATTATCTTGAATCTACATAGAATCGATTAGTAGATTGAAATAGTAGTCTAATTCAACTTCTTTTTTCACTGCATCCACTTAATTTCAATCAAGTCAAAATCAAAAAAATCGAAGATAATTCTTCATTGAAAGAATCCAAGGAGGGGGAGAAAAATAATACGAGAATAGACTAGAATAGATTATAGTAAAAGAAAAAAAGTAAAAGGAAAAAACCTACGGATCTTTCATGCTTAAAAAAGGTGCGAGATGCTTCAATCGAGATCCTTCAAAAAAAAAGAACATCAAAAATTTTCTAAGAATAAGAAAATAGTATAAATGGAAAATGTGCGATATATTGTGAATAGCTTCGTGTAAGAAAGTCTAATTTTCTTATGTTCTAATTTTCTTATGTATAGAACTTTCTTTTTACTCATAATTTCTAGTAGAATAGAAGTTATGAATTACTATAATCGCCCTTTCTATTCTATTATACTGGAATAGAACGACTCTTTCTTACTTTCTTAAAAGAGTTTCTTACAAGAGTGAAACAAAACTAAAGAAAGAGAGAAAAAATAAAGTTTGGCAAAATTATTAATGCAAAACGATCAATTAAAGAAAAGAGTTGATACTACAATTCGACTACTCAATCAATTGGTAGTATCCCTAGAGTCCACTCCTCCCCCATACTACTAGCGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGTGAGACTTACTATATCCATGTAAATTATGTCTCCTATTTCTATGAAAGAATTCTTCTACTATTGATCAATAATCATAGTGGAATCAAGGGTACAGAGTCAAAAGGCCATTCTGCCCTAAGACTATGGATGAATCCGTTAAAGGAATTTACTCCTAACAAATTCTTATATGATTTCTGGTAGAATTGGAGAGCATTAAGTAGAAATATGATACATCGCTCTTTCCCTAAAAAAGAGTAGGGGATGCTCTGAATAGAAGACGCGGGAATAGAGAGATTTTTTCTTTCGTTTGTTACCTTTTTTATAAGCAAAGGACGTAAGAATACACCATAAAATTAGGATAGATAAATATTTATTGGATACCTAACTTACCCATGTTTATTTTTATTTTTGACCTAAACCCTACTGCTGCCCCGCTTTCTATCTTTCTATGAAAGAGTAAGGAGGTCTTATCCACAATCCAAAAATTGATTTTTGATCAGCCTATTCAATCTAATTCTCGACAGAATCAGTAGCCTTTACTTTAGTGTATGTAGGTAGCATAAGATGTACGAAGTGTATGTAGTAAGAT

Transcript:

>GRMZM2G055567_T01

CDS:

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E8,	E8,E9,E8,	E8,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G055567_P01	PF00623.17	RNA_pol_Rpb1_2	388	443	3.10E-08
GRMZM2G055567_P01	PF04997.9	RNA_pol_Rpb1_1	23	386	8.60E-51

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	ATCG00180	0
Arabidopsis thaliana	AT4G35800	3.00E-12
Arabidopsis thaliana	AT3G57660	2.00E-06
Oryza sative	LOC_Os02g24614	0
Oryza sative	LOC_Os04g16830	2.00E-17
Oryza sative	LOC_Os05g05860	4.00E-11

7.Heuristic function module

Category	Family
GO	GO:0003677
GO	GO:0003899
GO	GO:0006351
GO	GO:0032774
Subcellular location	cytosol
Subcellular location	endoplasmic reticulum
Subcellular location	golgi
Subcellular location	nucleus
Subcellular location	plastid
Subcellular location	vacuole

8.Predicted function module

Category	Family
B73 abiotic stress conditional network	ABIOTICCFM7
B73 tissue specific conditional network	TISSUECFM76
B73 tissue specific conditional network	TISSUECFM82
B73 tissue specific conditional network	TISSUECFM368
B73 maize kernal conditional network	GSE62778CFM238
B73 maize kernal conditional network	GSE62778CFM530
B73 leaf section conditional network	SRP018823CFM152
B73 maize embryo and endosperm conditional network	SRP037559CFM18