Gene Detail

1.Annotation (Gramene)

Annotation: Uncharacterized protein

2.Location

Chromosome	Strand	Region	Start	End	UCSC
10	+	gene	131289403	131290981	LINK

3.Sequences

Gene:

Promoter(up TSS 3kb):

>GRMZM2G073041_promoter

TTTATTATAAAAGCCCAAGTTAAACCCTACATATTTAATCTAATTAGAATATTAATCTAATAAATATTAATCGAGCGAGCCTTAAGTTGAGTATCTAAAATATATGACCTGACAGATTAACATTATTAACGTGAGTGTTCGTAAGCGAAAACAACTTATTATCATGAGCAGACGTCGTGCGACCCGCGTCATCGACACGCAAGATACGTGCGAACGATGCACGACAAGGCGAGCGACATGTGCAAGTGGCACACGCGACGCACGCAAACGACGTGTGACAACGCGTGCGAACCGCACGCGTGACACGCGCGAACGACGCGCGACAACACAAGAATAATGCACGAACTATACGCACGAACAACACGACGACGGCGAGCGCCACACGTGCGAACAGCGCGTAGACAGTGCGACGACGCGCACGACTCACGAGAGTCGCTAACAGACATCGTGTTTATACTAAACACTAAATAGGTATTAAATACCATGTCTAAGTTGTTAAAATCACATTACCACATATTTACAATCGCCTAGCTAAAATCATAATTTTAATCCGATTGAGTATTCACTTTACTGACCGACAATTAAATACGAAATTAATTAGCGCCGGAGGATAGACGAGGTAGACGGGAGTCGTCTAGGGGTAGACGAACGTCGTCTAGGGGGTAGACGGATGTCGTCGGGACCCTGACGACGCGCTTCGCGAATATTAATTATGATATTTTATCTTATTTGACTTAGCCATATTAGCAAGTAATTATTGTAAGCACCAATAAAATCATTACCTAAATCTGATTGTGTTGTTACTCGAATAATCGTCGTTTTAGTACGCTTTTAATTAGTACGAGCGATTCTAGATAGAGTGGTTTACTGAATTGCGATGAGGTGTGCAACGCACGAGGGCGATGAGTGTGCTGCGTGCGGGATAGCGCACGCAACCACGCGGATGCAGTACAGGTTCGACGTGCGACGAATGACGATGACATCCACAGTGAACGCGCGGTGACAACAGTGTCTGCGGCTAGGGATTCACCCTGCGGACGTGCAAAGACCGAGGCGCCAGGGCATGCTGCATAACGATCGCGAGCAGCGCAGGCGGACACGAATGGCCACCCAAACGCGGATACCCGGTCCGCGGGCTGCGCACCACGCCATGAGTGTCGGGGTCACGCCAGGCTTCCGCTTGGGGAGGGGCTGGGCTCGGCCGGTCTGGACGGGCTCCGGGCACGTCGAGCGAGCGCCAAACCGAGCACGGCAAGAGGAGAGGAGGAGAGGGATGGAGAGAGGAAGGGGGCGAGCTCACCACGAATAAACGAAGGGCGGGTCCAAGGGAACTTCATGCAAGCTCAGGACTTCACACCATGCGACGAACTCGACGAGGGAGAATCACGGGCGTAGCTTACTCCGGGCGGACGGCGAGGCTCGACGGCGTCTTTTCTCTATCCTCTCTTTGTCCTCTGTATCCCACTTTTTAAGATTCTCCAACCACTTCTTGTCTTTCTATGAGATTTTTGTGTCAATCCACTGCTCAAAATCACAGAGCGGTGGAGGAGTCTACAAAACATGCAATGATTAGTACCAAAACAAAACATGCACCACTTCGTATGAAAGCTGTGAACTAACTAAAAAATTATTCTCACCATTAAATTCATCCGACGCTGAACAATCGTTGGCTCAAATGCATAGTTACCACACATCTAATACCTCTGTCGATAGGTGTCATGATCCTCTGACTTGTCAACCTTGCAAGGATCACCACAAAAACACATAGGCACTAGAACACCAGTTGGCAAAGGAAACGGGTCGAAGGCAGTTCCGGTCAACGGACCCTTCATAAATTTCGATATGTTTTATAAGACTCACAAATATTAGTTATTACATTTAATACAACACTTACCTTTGTTTAGCAGATTTACCACGCCTAGACATCCTACAAATCGATAATATGACAATAAAAATGATTCCCAAACGTTAACCCTAACCCTATTAATTAGACATAGCAAAAGACCAAAAAAATGGAGGGAGATTACCTTGATACACATGAATAATGGAATCAAGTCGTTGATTTAGGTTGATATTGGTCGTTTGGTAGAAGAGAAATGATTATACACGCTAATTTAATTGGCACCGACTCGTTCTAGCTCGGCGGTAATAGTGATGGTGCCGAGGTAGAGATTCATTTTTTTTGAAATGAAACTGGAAAATACATATTTGTGAAAATAAAATAAAAAAAAACTAAATTGCAAAAAATACGACGCGGGAGACAGCAACCTGGGAGCTACGTGCACGTGTAGGCCAAGCTATGTGCAAGTGCCCCAGGGTGGTGGGCAACCATGTCCTAATCCACAGAAACAAGCACGTACCCAACCTTCTACAGCTATTATCCCAATAAGGCTTTGTTCGTTTACACCAATCCCGCTCTGGATTAGCATGGATTGGAATTAAATCCATGCCTCAATCCATGCCCCAAAATAATCCATGACTACTTAATTTTTTTATTCGGTTAAACCCATCATGGAATATAACCCAAAGATTTGGGAATTTTTTAAACTATGGAAGACATGGATTCTATCCATAGCCCATTAGGTATGGAACAAATCCATGAGATATTGCACAAGTTTACATTAGAATCCATGGATCAAAAGAATAACTAGCTTTGAAAGTCACATGGATTTGTTGATGGATTTAATCCCACCATGGGATTGGGTGTGAGATATGGATTCACCCAATCCATACCCGGATTAAATCCATGATGGGATTATATCCCATGTAACCGAACAAGGCCTAAGTAGTCCGAGTGTCCGACGGGTAGATTATCAAAAGATAGATGTATATATTATGAATAGATAGATGGATAGATTTGGGGTTGGTTATTTTCCAAAACCGCTAAATTAGTTAGCTACAACTATATCCAGATATATTTTTAGCCGGTGAACGGACTTGCACGGTGAACGGACTTGCACGCTTGCTTGCATATAAAGTCTGCCCACACGGCCACAACAC

Transcript:

CDS:

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E31,E38,E25,E5,	E5,E12,E38,E32,	E32,E27,E31,E36,E16,E32,E27,E32,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G073041_P01	PF02840.12	Prp18	199	339	3.50E-60
GRMZM2G073041_P01	PF08799.8	PRP4	80	106	5.70E-09

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT1G03140	2.00E-129
Arabidopsis thaliana	AT1G54590	9.00E-103
Arabidopsis thaliana	AT1G49480	0.23
Oryza sative	LOC_Os07g38420	2.00E-156
Oryza sative	LOC_Os03g49430	3.00E-108
Oryza sative	LOC_Os03g19590	0.25

7.Heuristic function module

Category	Family
KEGG pathway	zma03040
GO	GO:0005681
GO	GO:0008380
Subcellular location	cytosol
Subcellular location	nucleus

8.Predicted function module

Category	Family
B73 Global RNA-seq network	B73RALLCFM261
B73 abiotic stress conditional network	ABIOTICCFM645
B73 tissue specific conditional network	TISSUECFM183
B73 maize kernal conditional network	GSE62778CFM40
B73 maize kernal conditional network	GSE62778CFM116