GRMZM2G087095's detail annotation

1.Annotation (Gramene)

Annotation: MADS-box transcription factor 34; Uncharacterized protein

2.Location

ChromosomeStrandRegionStartEndUCSC
1-gene277377468277415566LINK

3.Sequences

Gene:
Promoter(up TSS 3kb):
Transcript:
CDS:
Protein:

4.Chromatin states

States in Promoter (2kb)States in GenebodyStates in Downstream (2kb)
E1,E3,E11,E1,E2E25,E38,E1,E2,E1,E11,E23,E11,E3,E11,E1,E24,E23,E26,E18,E31,E30,E19,E18,E28,E38,E28,E16,E28,E38,E19,E28,E38,E29,E38,E28,E38,E37,E38,E19,E38,E19,E19,E38,E28,E38,E19,E17,E29,E16,E38,E18,E26,E11,E23,E26,E28,E38,E28,E38,E28,E10,E25,E11,E1,E24,E2,E3,E1E1,E24,E1,E24,E1

5.Protein domain

Protein IDPfam AccessionPfam AnnotationAlignment StartAlignment StartE-value
GRMZM2G087095_P01PF00319.15SRF-TF10571.10E-25
GRMZM2G087095_P01PF01486.14K-box851722.80E-28

6.Blast top3 hits

SpeciesGene IDBlast Evalue
Arabidopsis thalianaAT3G023101.00E-77
Arabidopsis thalianaAT5G158005.00E-76
Arabidopsis thalianaAT2G037101.00E-75
Oryza sativeLOC_Os03g541702.00E-121
Oryza sativeLOC_Os03g116144.00E-79
Oryza sativeLOC_Os09g329482.00E-74

7.Heuristic function module

CategoryFamily
GOGO:0003700
GOGO:0046983
GOGO:0003677
GOGO:0005634
GOGO:0006351
GOGO:0006355
Subcellular locationendoplasmic reticulum
Subcellular locationgolgi
Subcellular locationmitochondrion
Subcellular locationnucleus
Subcellular locationvacuole

8.Predicted function module

CategoryFamily
B73 Global RNA-seq networkB73RALLCFM356
B73 Global Microarray networkB73MGSE27004CFM156
B73 Global Microarray networkB73MGSE27004CFM424
B73 Global Microarray networkB73MGSE27004CFM425
B73 Global Microarray networkB73MGSE27004CFM551
B73 Global Microarray networkB73MGSE27004CFM644
B73 biotic stress conditional networkBIOTICCFM17
B73 maize kernal conditional networkGSE62778CFM39
B73 maize kernal conditional networkGSE62778CFM714
B73 maize development conditional networkSRP010680CFM15
B73 leaf section conditional networkSRP018823CFM104
B73 maize embryo and endosperm conditional networkSRP037559CFM10
Mo17 tissue specific networkMO17RALLCFM10

9.Expression pattern

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 B73 global RNA-seq network8DAP_aleuroneanthesis_anther~5mm ear_anther10 days before cob emergence_preem…10 days before cob emergence_preemergence cobsilk emergence_postemergence cob5DAP_coleoptyle14DAP_ear primordiaIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 earSM_1mm middle of 10mm B73 earIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 ear~5mm ear_ear8DAP_nucellus8DAP_embryo8DAP_embryo-placento-chalazal region8DAP_embryo-surrounding region10DAP_embryo12DAP_embryo14DAP_embryo_od14DAP_embryo16DAP_embryo16DAP_embryo_od18DAP_embryo20DAP_embryo22DAP_embryo24DAP_embryo25DAP_embryo26DAP_embryo28DAP_embryo30DAP_embryo32DAP_embryo34DAP_embryo36DAP_embryo38DAP_embryo6DAP_endosperm-central starchy6DAP_endosperm8DAP_endosperm-central starchy8DAP_basal endosperm transfer layer8DAP_endosperm-conducting zone8DAP_endosperm-conducting zone_od8DAP_endosperm10DAP_endosperm12DAP_endopsperm12DAP_endosperm_od12DAP_endosperm14DAP_endosperm_od114DAP_endopsperm14DAP_endosperm_od15DAP_endosperm16DAP_endosperm16DAP_endosperm_od18DAP_endosperm19DAP_endosperm20DAP_endosperm22DAP_endosperm24DAP_endosperm25DAP_endosperm26DAP_endosperm28DAP_endosperm30DAP_endosperm32DAP_endosperm34DAP_endosperm36DAP_endosperm38DAP_endosperm9DAP_third leaf section19DAP_third leaf section29DAP_third leaf section39DAP_third leaf section49DAP_third leaf section59DAP_third leaf section69DAP_third leaf section79DAP_third leaf section89DAP_third leaf section99DAP_third leaf section109DAP_third leaf section119DAP_third leaf section129DAP_third leaf section139DAP_third leaf section149DAP_third leaf section1610DAG_young immature leaf12DAP_leaf14DAP_leaf apex14DAP_P6 leaf primordia14DAP_P7 leaf primordia14DAP_base of the leaf14DAP_maturing zone of the leaf14DAP_mesophyll from leaf slice 514DAP_leaf_control14DAP_leaf_first drought14DAP_leaf_third drought14DAP_leaf_control_set114DAP_leaf_control_set214DAP_leaf_aphid_2h14DAP_leaf_aphid_4h14DAP_leaf_aphid_8h14DAP_leaf_aphid_24h14DAP_leaf_aphid_48h14DAP_leaf_aphid_96h20DAS_leaf2-3 leaf stage_leaf_control2-3 leaf stage_leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_controlafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_saltafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_drought plus saltseedling_3rd leaftwo days after appearance of fourth lea…two days after appearance of fourth leaf_4th leafV5_tip of stage-2 leafV9_8th leafV9_11th leafV9_13th leafV9_immature leafVT_13th leafR2_13th leafmicrospore stage_microsporeanthesis_ovule8DAP_vascular region of the pedicel8DAP_pericarpanthesis_pollenanther dehiscence stage_pollenseedling_root14DAP_root_od114DAG_root_od214DAG_root_od3seedlings grown to 2 inches tall_root4DAP_root meristematic zone4DAP_root elongation zone4DAP_root differentiation zoneunknown_root6DAS_primary root4DAP_root meristematic4DAP_root elongation4DAP_root cortex4DAP_root stele9DAP_root3-4DAP_root(no root hairs)3-4DAP_root(with root hairs)28DAP_primary root_control28DAP_primary root_salt28DAP_crown root_control28DAP_crown root_salt28DAP_seminal root_control28DAP_seminal root_salt2-3 leaf stage_root_control2-3 leaf stage_root_droughtseedling_root_6h controlseedling_root_6h mild water deficitseedling_root_6h severe water deficitseedling_root_24h controlseedling_root_24h mild water deficitseedling_root_24h severe water deficitseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_control_6hseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_drought_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_control_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_drought_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_control_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_drought_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_control_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_drought_6h63DAP_stele of shoot-borne root_low N63DAP_stele of shoot-borne root_high N14DAP_SAM19DAG_SAMafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_controlafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_droughtafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_saltafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_drought plus saltseedling_SAM24H_germinating seed0DAP_seed2DAP_seed3DAP_seed4DAP_seed5DAP_seed6DAP_seed8DAP_seed10DAP_seed_od110DAP_seed10DAP_seed_od212DAP_seed12DAP_seed_od14DAP_seed14DAP_seed_od16DAP_seed16DAP_seed_od18DAP_seed20DAP_seed22DAP_seed24DAP_seed26DAP_seed28DAP_seed30DAP_seed32DAP_seed34DAP_seed36DAP_seed38DAP_seedseedling_controlseedling_coldseedling_heatseedling_saltseedling_UVseedling_control_od1seedling_droughtseedling6-7 DAP_above ground seedling9DAP_shoot12DAP_shoot14DAG_shoot_od114DAG_shoot_od214DAP_shootV2_shoot_control 24hV2_shoot_submerge 24hV2_shoot_submerge 72hseedling_shootseedlings grown to 2 inches tall_shoot2-3 leaf stage_stem_control2-3 leaf stage_stem_droughtV3_stem and SAManthesis_silk12DAP_tassel14DAP_tassel primordia1mm-2mm ear_tassel primordia3mm-4mm ear_tassel primordia5mm-7mm ear_tassel primordia10 days before tassel emergence_pree…10 days before tassel emergence_preemeergence tasseltassel emergence from whorl_postemer…tassel emergence from whorl_postemergence tassel020406080100120140-20Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 tissue specific conditionalnetworkexpression trend for GRMZM2G087095 at B73 tissue specific conditional network8DAP_aleuroneanthesis_anther~5mm ear_anther10 days before cob emergence_preem…10 days before cob emergence_preemergence cobsilk emergence_postemergence cob5DAP_coleoptyle14DAP_ear primordiaIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 earSM_1mm middle of 10mm B73 earIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 ear~5mm ear_ear8DAP_nucellus8DAP_embryo8DAP_embryo-placento-chalazal region8DAP_embryo-surrounding region10DAP_embryo12DAP_embryo14DAP_embryo_od14DAP_embryo16DAP_embryo16DAP_embryo_od18DAP_embryo20DAP_embryo22DAP_embryo24DAP_embryo25DAP_embryo26DAP_embryo28DAP_embryo30DAP_embryo32DAP_embryo34DAP_embryo36DAP_embryo38DAP_embryo6DAP_endosperm-central starchy6DAP_endosperm8DAP_endosperm-central starchy8DAP_endosperm-basal transfer laye8DAP_endosperm-conducting zone8DAP_endosperm-conducting zone_od8DAP_endosperm10DAP_endosperm12DAP_endopsperm12DAP_endosperm_od12DAP_endosperm14DAP_endosperm_od114DAP_endopsperm14DAP_endosperm_od15DAP_endosperm16DAP_endosperm16DAP_endosperm_od18DAP_endosperm19DAP_endosperm20DAP_endosperm22DAP_endosperm24DAP_endosperm25DAP_endosperm26DAP_endosperm28DAP_endosperm30DAP_endosperm32DAP_endosperm34DAP_endosperm36DAP_endosperm38DAP_endosperm9DAP_third leaf section19DAP_third leaf section29DAP_third leaf section39DAP_third leaf section49DAP_third leaf section59DAP_third leaf section69DAP_third leaf section79DAP_third leaf section89DAP_third leaf section99DAP_third leaf section109DAP_third leaf section119DAP_third leaf section129DAP_third leaf section139DAP_third leaf section149DAP_third leaf section1610DAG_young immature leaf12DAP_leaf14DAP_leaf apex14DAP_P6 leaf primordia14DAP_P7 leaf primordia14DAP_base of the leaf14DAP_maturing zone of the leaf14DAP_mesophyll from leaf slice 520DAS_leafseedling_3rd leaftwo days after appearance of fourth lea…two days after appearance of fourth leaf_4th leafV5_tip of stage-2 leafV9_8th leafV9_11th leafV9_13th leafV9_immature leafVT_13th leafR2_13th leafmicrospore stage_microsporeanthesis_ovule8DAP_vascular region of the pedicel8DAP_pericarpanthesis_pollenanther dehiscence stage_pollenseedling_root14DAP_root_od114DAG_root_od214DAG_root_od3seedlings grown to 2 inches tall_root4DAP_root meristematic zone4DAP_root elongation zone4DAP_root differentiation zoneunknown_root6DAS_primary root4DAP_root meristematic4DAP_root elongation4DAP_root cortex4DAP_root stele9DAP_root3-4DAP_root(no root hairs)3-4DAP_root(with root hairs)14DAP_SAM19DAG_SAMseedling_SAM24H_germinating seed0DAP_seed2DAP_seed3DAP_seed4DAP_seed5DAP_seed6DAP_seed8DAP_seed10DAP_seed_od110DAP_seed10DAP_seed_od212DAP_seed12DAP_seed_od14DAP_seed14DAP_seed_od16DAP_seed16DAP_seed_od18DAP_seed20DAP_seed22DAP_seed24DAP_seed26DAP_seed28DAP_seed30DAP_seed32DAP_seed34DAP_seed36DAP_seed38DAP_seedseedling6-7 DAP_above ground seedling9DAP_shoot12DAP_shoot14DAG_shoot_od114DAG_shoot_od214DAP_shootseedling_shootseedlings grown to 2 inches tall_shootV3_stem and SAManthesis_silk12DAP_tassel14DAP_tassel primordia1mm-2mm ear_tassel primordia3mm-4mm ear_tassel primordia5mm-7mm ear_tassel primordia10 days before tassel emergence_pree…10 days before tassel emergence_preemeergence tasseltassel emergence from whorl_postemer…tassel emergence from whorl_postemergence tassel020406080100120140-20Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 abiotic stress conditionalnetworkexpression trend for GRMZM2G087095 at B73 abiotic stress conditional network14DAP_leaf_control14DAP_leaf_first drought14DAP_leaf_third drought2-3 leaf stage_leaf_control2-3 leaf stage_leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_controlafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_saltafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_drought plus salt28DAP_primary root_control28DAP_primary root_salt28DAP_crown root_control28DAP_crown root_salt28DAP_seminal root_control28DAP_seminal root_salt2-3 leaf stage_root_control2-3 leaf stage_root_droughtseedling_root_6h controlseedling_root_6h mild water deficitseedling_root_6h severe water deficitseedling_root_24h controlseedling_root_24h mild water deficitseedling_root_24h severe water deficitseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_control_6hseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_drought_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_control_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_drought_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_control_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_drought_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_control_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_drought_6h63DAP_stele of shoot-borne root_low N63DAP_stele of shoot-borne root_high Nafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_controlafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_droughtafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_saltafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_drought plus saltseedling_controlseedling_coldseedling_heatseedling_saltseedling_UVseedling_control_od1seedling_droughtV2_shoot_control 24hV2_shoot_submerge 24hV2_shoot_submerge 72h2-3 leaf stage_stem_control2-3 leaf stage_stem_drought01-0.250.250.50.751.251.51.75Highcharts.com

Created with Highcharts 5.0.14log2(expression profile data)expression trend for GRMZM2G087095 at B73 global Microarray network24H_Germinating Seed6DAS_GH_Coleoptile6DAS_GH_Primary RootV1_GH_Primary RootVE_Whole SeedlingVE_Primary RootV1_Pooled LeavesV1_Stem and SAMV4_Stem and SAMV3_Stem and SAMV3_First Leaf and SheathV3_Topmost LeafV5_Shoot TipV5_First InternodeV5_Tip of stage 2 LeafV5_Base of stage 2 LeafV7_First InternodeV7_Tip of stage 2 LeafV7_Base of stage 2 LeafV9_Fourth InternodeV9_Eighth LeafV9_Eleventh LeafV9_Thirteenth LeafV9_Immature LeavesV13_Immature TasselV18_Meiotic TasselV18_Immature CobVT_Thirteenth LeafR1_Pre pollination CobR1_SilksR1_AnthersR1_Innermost HuskR2_Thirteenth LeafR2_Outer HuskR2_Innermost Husk2DAP_Whole Seed4DAP_Whole Seed6DAP_Whole Seed8DAP_Whole Seed10DAP_Whole Seed12DAP_Whole Seed12DAP_Endosperm14DAP_Whole Seed14DAP_Endosperm16DAP_Whole Seed16DAP_Endosperm16DAP_Embryo18DAP_Whole Seed18DAP_Endosperm18DAP_Embryo18DAP_Pericarp20DAP_Whole Seed20DAP_Endosperm20DAP_Embryo22DAP_Whole Seed22DAP_Endosperm22DAP_Embryo24DAP_Whole Seed24DAP_Endosperm24DAP_Embryo55.566.577.588.599.5Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at Mo17 global RNA-seq networkcoleoptyleembryoendospermleafrootSAMshoottassel-2.502.557.51012.51517.52022.52527.5303…32.5Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 biotic stress conditionalnetwork (14DAP_leaf)expression trend for GRMZM2G087095 at B73 biotic stress conditional network (14DAP_leaf)control1control2aphid_2haphid_4haphid_8haphid_24haphid_48haphid_96h-0.02-0.0100.010.020.030.040.050.060.070.080.090.1Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 maize embryo andendosperm conditional networkexpression trend for GRMZM2G087095 at B73 maize embryo and endosperm conditional network0DAP2DAP4DAP6DAP8DAP10DAP12DAP14DAP16DAP18DAP20DAP22DAP24DAP26DAP28DAP30DAP32DAP34DAP36DAP38DAP-5051015202530354045505560657075Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 maize 8 day kernelconditional networkexpression trend for GRMZM2G087095 at B73 maize 8 day kernel conditional networkcentral_starchy_endosperm(CSE)conducting_zone(CZ)embryo_surrounding_region(ESR)basal_endosperm_transfer_layer(BETL)aleurone(AL)embryo(EMB)placenta_chalazal_region(PC)nucellus(NU)pericarp(PE)vascular_region_of_the_pedicel(PED)0510152025-530Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 maize developmentconditional networkexpression trend for GRMZM2G087095 at B73 maize development conditional network24H_germinating seed6DAS_primary rootV3_stem and SAMV5_tip of stage-2 leafV9_immature leafV9_13th leafV9_11th leafV9_8th leafVT_13th leafR2_13th leaf10DAP_seed12DAP_seed14DAP_seed16DAP_seed12DAP_endopsperm14DAP_endopsperm16DAP_endosperm16DAP_embryo010203040506070-10Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM2G087095 at B73 maize 3rd leaf sectionconditional networkexpression trend for GRMZM2G087095 at B73 maize 3rd leaf section conditional networksection1section2section3section4section5section6section7section8section9section10section11section12section13section14section16-0.00500.0050.010.0150.020.0250.030.0350.040.0450.050.0550.060.0650.07Highcharts.com

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