Gene Detail

1.Annotation (Gramene)

Annotation: Uncharacterized protein

2.Location

Chromosome	Strand	Region	Start	End	UCSC
8	+	gene	146628450	146633412	LINK

3.Sequences

Gene:

>GRMZM2G171279

ATGGCAGGGTGCGCACCCTCCAGGGTGGCGTCGTGCGGGCCGTGGGGCGGCAGAGCGGCGCTAGAGAGTGAGCTGTCGTGGGACGGCAGCCACTACAGCATCTCCAGCGGCATCCTGCCGTCGCTCGGCGCGCGGAGCAACCGCCGCGTCAAGCTCAGGCCCTTCATCGTGTCGCCCTACGACCGCCGATACAGGTTTTTTCTTTTCTTTTCGCGGCGTCCTCCTCGTTATTAGCTCCCGTTCGGTTCTGCTTGCCTGTGTCGTCCTGCCTACCGTCGATCTCTGCGGGCTGGATTGGAAGGTGGCTCCTTGTTGTTGCATTGCTGGCCTGATGCTTTTGCCTCACCGGTGGCTTGCTCTGCCTGCTTTAATTTTGGTGATGGTCGGCGATGAGTTGGTTGTATTGTAATTCTGGTAGTTGTTGAAGATAGCGGCCGAGCTTTCTCTTCGTATGTGATTCACTAACTGTTGAATTCCAAATATGTTTCCATGAATTAGAATGGTCGCTTCTGAATTATTTTTTGTCGCTCAAAGTTATTGATATCTGTGCACTGTCTTCTTTGCTTCCTTTCTTTTTATCGTCAATTCTCTTCGATTGTAAACAGATATAATTGATCTTTATAGATTTTTATTACTGCTTTCTTGGTTTGACCTGGACTGAATAATTATTTTCCCTTTTTACTGCAATAATTGGTATGTTTATGTTTTGCCTTTTTTAGTGGTCGCACTTCTGCTTTGATTTTGTTTACTCGTTCATGATATCGATGGTGACGTATCTGCATTTCTCGATTTACCGTCCTGCGCTTCTTTCTGCAACTATTAGTTGTGCAAAGTGCTCATTTCCGGAATTCTGGTGGAAAACCTTTTCTGAATCGTTTTATAATTTACTGAATTGTTAGTTACGGTGGGTGGTATATGTCTGCGACTGCGTTTTCCAGGGTAGCTTTTGTTTTGCCCGTTTTTCTTACCACTGTCAATTTTTTGGGGTGCTTTTTAGTTTATTACTTTGTTTTTCTAAATCAGTGAGGGCTGCGTTTGTTTTTTTCCCATAATTTCATAATTTACTTGCAACCAAAACTAATTTTTGCATGGATATTATTGCTTCACCCTTGCATGAGCAGGACGATTTTGCTGGTAAAAACTAAAAAAATGATATTTTTAGTTACAACACGAAAAAATGGTTCTGATGGTTATTAATTCTATGCAGATGCTGGGAGACTTTTCTCATAATCCTTGTGGTATACTCTGCATGGGTTTCCCCATTTGAGTTTGGCTTCATTCAGAAACCAACGGGCGCCCTAGCTGCAGTGGACAATGTCGTGAATGCGTTCTTCGCAGTGGACATCATCCTGACCTTCTTTGTAGCTTACTTGGATAGAATGACATACTTGCTTGAAGATGATCCAAAAAGAATAGCTTGGAGGTATACTACCAGTTGGTTTGTTCTTGACGTGGCCTCCACCATCCCGAGTGAATTTGCTCGGAAGATACTACCACCAGACCTCAGGTCATATGGATTTTTCAACATGCTTCGTCTATGGCGTCTCCGTAGAGTCAGCTCTCTCTTTGCTAGGTATGTTAACAATGGTGTATGTGTTTTGAGCACATGTGTATGTGTATATGAGACTAATGCTTTGTTGTATGATAATCAATTTGTGCAGTGCAATTTATCACTGTTTGTCTTGTTGTTATTAACAAGGCTAGCTAATGTTTCACCTAAACTTCTTACTTTCTAGATTGGAGAAAGATAGACATTTCAATTACTTCTGGGTTCGATGCGCAAAGCTCATATGTGTAAGTAATCAGTCCATTTGAGATTCCTGTAATATTGTTGACGAATGACATCTTATTTGCTTACCTCGGATCTTGTAGGTCACACTTTTTGCGGTCCACTGTTCGGCATGCTTCTACTATCTTCTCGCTGATATGTATCCTACCCCAACAGATACGTGGATTGGTAATTCAATGCCAGATTTTCATCAGCGGGGTTTGTGGATTCGCTATGTAGTGTCAGTATATTGGTCAATCACTACGCTTACCACTGTGGGTTATGGTGATTTGCACGCGGAGAACACAAGGGAAATGATATTCAACATTTTCTACATGTTATTCAACCTTGGATTGACTGCCTATTTGATTGGTAACATGACCAATCTGGTTGTCCATGGCACCAGCCGTACTCGAAAATATGTGAGCCGTTTTTCACCTTTTTGTTTAGTCTTGGCTGATACCAACCTTTATAAGGGTCATATTGAAGTTGCACCTAATACTTTACTTTTCCTGTTATGTTTTGGACGAAAGAGAGATACAATTCAGGCAGCGACCAGCTTTGCACTAAGGAATCAATTACCAAGTCGGCTCCAAGATCAGATGATCTCACATCTTTGCTTGAAGTTCAGGACAGATTCAGAAGGTCTTCAACAACAAGAAACGCTCGATGTCCTCCCTAAGGCTATAAGATCCAGCATTTCTCAGTATCTATTTTTCAATCTTGTCCAAAAGGTTTACTTGTTTGAAGGGGTGTCCAATGACCTCATTTTTCAACTGGTGAGGCTATGAAAATTCCATTTTGTATCCATTTAAAATGTTTTGCTACTGCTTCATAATGTAATTTTCTTGCTTTGTGTTATTCCATGGAAAAGGTTTCTGAGATGAAAGCTGAATATTTTCCACCTAGGGAAGACGTGATTTTGCAGAATGAAGCACCCACAGACTTTTATATTTTAGTTACTGGTAGCGCGGTAAGGATACCATTATGCATAAATAAATTTTGGGAAGAAAAGTAGCAGTTTTGCTATCAATATGGCAGAAACCAAATCACATGGTCATTCTGATACGCTTGTTACTTCTACAGGAGTTGATAGAGTTGCAAAATGGCGGAGAACAGGCAAGTTTATGTTCTTTGATGCTCAAGTGGCAGTGAATCTATTGATCAAATTGTCCTTTTAACACAATATATGCTGGTACCTGCAGATGGTTGGAGTGGCTAAGGCAGGAGATGTTGTTGGAGAAATTGGGGTTCTTTGCTATAGGCCTCAACTATTCACAGTTCGAACAAAATCATTATGCCAACTTCTGCGTATGAATCGCACTGCCTTTCTCAGCCTTGTTCAATCCAATGTTGCAGATGGAACAATAATAATGAACAACCTTATTCGGGTACAGGAACCACATTATTCTTCCTAATTTTCTTTGATGTTGCATATTTCAGTTATATCCAATTTGTACTTGTAGAGTTTTGACATAGAAAAGGTCAAAAGGGATCTGAACCAACCCATTTACTTAATTAGATTAGGTTTCCATTATTTCCCCAGTATTATCTTGCTTAACATTATTTGAAACTCAATATTTTATTATCTGGTAATCACTAGGCTGTATATTAAGTTCTTGAGTCATGTTAACTGTGGCATGATATTTTTTTTTGAAACCCCATTGGTTTTAAATCTACTACTGATAATCACCGGCTACACCAATAGTGATAAAGTATTTTGAAACCCCATTGGTTTTAAATCTACTACTGATCATGATTTTTCTTAATTTTTTATTATGGTTGTAGTTATTAAAGCAGCAGAATGACAACAGTGTAATGATGGGTGTTCTGAAGGAGATCGAGAACATGCTAGCTCGGGGTCGTCTGGATTTGCCAGTTACTCTCTGTTTTGCAGTAAACAAAGGAGATGATTTTATGCTACACCAACTTTTGAAGCGTGGTTTGGATCCAAATGAATCGGATAACAATGGGCATACAGCACTGGTATGCATATCCATTGATTCATATGTGTTTGTGCCAACAGATTTACGTTAAGCAAAGAAATTTAACAGTGTTCAAATCATTATTTACAGCATATAGCTGCTTCCAAAGGAGACGAACAATGTGTCAAGCTTCTTCTAGAGCACGGAGCTGATCCAAATGCTAGAGGTACGCATAAAACTAGAGCTGTGATACATCTGTTACAGATCGACCAGAACTACTGTCATTCGTGCCACCAAGAAAACTAAATTTACTAGTTAGGGACTCATGCTTTCATTTGTGATATTTTTGCCATGTGTTTTAACCCTTCCATCCGTTACAGACTCCGAAGGAAAGGTGCCTCTTTGGGAGGCTTTATGTGAAAAGCAGAATCCAGTGGTAGAGCTGCTAGTACAGAGCGGTGCGGGGCTATCATCCGGAGACGTGGCCTTGTACGCTTGCGTCGCTGTAGAGGAAAATGACCCTGAGCTGCTTGAGAACATTATCCGTTACGGCGGCAACGTAAACAGCTCAATGAAAGACGGAACCACGCCGCTGCACCGCGCGGTCTGTGACGGGAACGTCCAGATGGTTGAGTTGTTGCTGGAACACGGAGCTGACATCGACAAGCAGGACAACAATGGCTGGTCGGCGAGAGCTCTAGCTGACCAGCAAGGCCATGACGACATCCAGTCTCTCTTTCGATCGCGGAAAGCACATAGGCAGCAGCATGCCTCGAAGGGCAGAGTGGCACCTGTGCCGATATGGAGGTTCAACAGCGAACCCACGATGCCAAAGATGAAACATGAAGAAGACGCTGAGCTACGCGGCAAAGTTGTTCCGCAGAAGCTCCTCAGAAAGAGGGTCAGCTTCCAGAATTCTCTTTTCGGTGTCATCTCTTCGTCCCACGCCCGCCAGGACACTGGTCGTCTGCTCTCGAAAGGCCTTGCTGGAACAGGTAGTCCAGGTTGCAGCCACGGCTCCCTCGTCAGGGTGACAATCGGCTGTCCTGAGAAGGGGAACGCTGCAGGGAAGCTCGTGCTCTTACCACGGTCGATGACTGAGCTTCTCGAACTAGGCGCGAGGAAGTTTGGCTTCAAGCCTACCAAGGTCCTGACGACTGGGGGTGCTGAGATTGATGAGGTGGAGCTTATCAGAGACGGTGATCATGTTGTTCTCGTCAGTGATGACTGGGCGCCAGATGTTGCACAATTAAGACCGAACGACAAGTGA

Promoter(up TSS 3kb):

>GRMZM2G171279_promoter

GTGTGATCGCCTCTCGGCTGGAAGGGCGCAGAGATTCCTGTGTGTCCGTCCCCGTCCGTGCCCGGCCCCAGTGCTTATATATACATCTGGTCTCGCCTGCGGCCGGAGGAGAGAGGACACGCCGAACGTGCGCGAGAGATCGTGCGGCGGAGTAGACGGATCGACCATAAATGCAATGGGGGAAGAATGGAAGTGTCGTCCTGGCATCCGGCAGACGAGACGACGACGACGACGCAGGACGCTGGAGAAACGTGGGCCGATGGAGCCGATTTATTGGATGCCGACTCGATTGGATGTCGGAGGACGCTGTGTGTGGTGTGGAGTATATATGTATGGGCGGGCGAGCGACGGTCGATCGATCGATCGATAGAACCACCACCAACCAACCCATCTCGATCTGTCTGTCGATCCGCATCTCCTCGTGGAAAAACCAGGCTTGCCGACCGGAAACCTCGGAACGTGCTGCGTAGTGGCCTGCGCGGCTGCGCCATCGCAGCGTGATGGCGATATATACAACCAGGGATGCATGGCTGTGGCAGGCTAGCCGGGACCCACCAGCTTCTTCTGAACGTAGAGCAAAGCACTACCGGCCGGCGGCCTACCAGATGTCCAGTCCAGATGAGCGAGCGAGCCGCATGTTCTGTTGTTGGTGGTGCCGTACTATTACACTGCGACTTGCCGACTTGGCTCAGAGACTTCTTCGTAGGCCTCTCCTAGCTAGTCTATTCGAGTCGACGGGTAGCCTAGCCTAGCCTATGTTCATTAGCTAGCTGTTTGGGATTCCGGTCCCGTTGCACGTCACGCATCACGTGGGACAAATTCGGGCGAAGGCCATCGTCAGCTCACTGTTCCGGAGGCTCCGATCGAATAGCAGCATCGTCAGCTCGCTGTATATATATATATATATAGGCGAGTAGCTAGGCGGGGCCTGAGCTCCACTGTACGTCAGGCGTACGTGCTCGACCGTCCATGCATGATGCATGGTCGTTGACATCCATCCCTTCTACGTCAATGCCTGCGCGGCCATGACGCGTTTATCCTTGAATAGTGTGTAGTCTTCTCCTGCTTAATTAAGCATTATCCTTCAATACATATACTCTCGCACATGACGGCGTTTACGTGGACCTCCCCTCCCCTCCCCTCTTCTTAATTAATCTTCATGCGCCTGTCCGATCGACGACTTTAATTTGGGTTACTTGCGAATTTCCAATATCTTTTTCACCTGGATATTCAATTCTAGCTTTTGCTACCCCATGTGTACATAGGGGATGATATATATAGGAAGGAGACAAGGTTTGACTTTAATGAAGGACAAAAAAAAACATCTCAAAAAATGTATGGCATGTTTTCGACCGACCCTGTTTTTTATATCCAGTAAACTATGTTTGTGCTACTGCCTAGCTAGCTACCATTGACTTCTAACAGTAATAACTTCATTTTGCACAAGAGGCAAGCTAATAATCCAGCAGCCGACAAGATCAAGGGGGGAATTTCCATTTTTTTTTGGTAACGAAAGAATGTTTTTATTCATATAATGAGATGGTGATATGATGAGATGGTGGAAGAGGCCAAAAAGGTGAGTGCTGACTACTGCCAACTGCCTCGCTCGGTCGTCCCAGCGCAATGGGCGACTGTGTCATTCTTTCATCCCTTTTTTTTTTAGTTTTCTCGTGGATTTCTTACGTTATTAGTTCAGTCATTCCAGCGTCTACTAGGCAATATTTAAGTCATTCTAGATAATTTTAACTCGTTCTAAAGTCTACGTAACATAAATATTAATTCTTTTTTATAAAACATTTAGTTATTATTGTTTTAGCCATCTTTCTGGGTTTGCTCGGACATTTTTTATGTTATTGGTTCAGTCATTCCAACGTACAAACAACATTTAAGTCATTCTATGTAACTTTAAGTCATTCTAAAGACTAGGTAACGTTTAAGTTATTTTAGGCTACATTAAGTTATTTTAGGCGAGATGGCTTGGCTGGACGGGCGGGACGACTTGATCGGCTGGTTGGGCAGGCGTGGTGGGCAGAGCCATGAGGGGGCGCGCGTTGGCCGGGTGGCACACCAGGGTGGTCCAGATGATGAATAGATCTGCCTTGGTGATATATATACTTTTTCTCTGTGGTGACTCGCGAGCTTAACGAGCCAACTCGAGCTCGTAAATAAGCTAAGCCAAGCTAGTTTTGTGGCTTGTTATCTTAACAAGCCGAACTAAGTCAACCCATTAGCTTAATGGGTCAACTCAAACTCGACCGATATCTAGCCCTACACACGGGGTACACACGCTGGGTTGGCTGAGGCCGTTCTGTTTCTCTTAACAGGTTGGATCGGAGGCTTTGTTTGGTTAGACGTACAAGAAGGGGTGAAAGATGACGGTCATATTTTTTATAGTGTTTAGATGAGAGTCGAACGAGAAAAAAAGTAAACACCGAAGCAATTTCTAGTGACAGCTGGTTGGATGATGTCACCTGGTTACAACTACAGGGAACACTCCCCCCCCCCCCCCCCCCCCCCCTGCCCGTGTCACGGAGAGTCGGAGGCAGTCAGGCAGATGCAGCCCAATGCACCCGCACGGCCGCACCCCTCACGCGTTCGCGCCCGAGCGGGGCCAGGGGCGCGCCGCGCGCAGCCGGGAAAAGCCAAATCCCGTTTCCCAGAAAGCCACCCGGTGTCATCCTGCTGAGTGCTCCCATAAAATGGCGCCGAGCGCGCGCTTGCTCCCGCACCAACTCCGTTGTCCGCTCCAGGCTCCAGCTCTCCTCCCTCGGCCGCGTTCTGCGGCCTGCCATCGCCCAGCCGCGCGCGCTGCCGCCCAAAAGCTGAAAATAGATAGCACCACGAGGGGGAGACCGACTAGACAACCCGATCCTTAGCTAATTACGCACGGGCTGCCAGATTCGGGGCGCGCGGCGCTCCTACCCACCCATCCCTCTCCCGGTAAACCCCGGGGAGGTTTACCGCGTAGCCGCTGGGCGGCGGCAAGGCGGTGGGGGAGCA

Transcript:

>GRMZM2G171279_T02

>GRMZM2G171279_T01

CDS:

>GRMZM2G171279_T02

>GRMZM2G171279_T01

Protein:

4.Chromatin states

States in Promoter (2kb)	States in Genebody	States in Downstream (2kb)
E3,E1,E11,E24,E3,E2,	E2,E1,E11,E3,E2,E1,	E1,E24,E17,E24,E38,

5.Protein domain

Protein ID	Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start	E-value
GRMZM2G171279_P01	PF00027.26	cNMP_binding	402	487	1.80E-15
GRMZM2G171279_P01	PF00520.28	Ion_trans	65	309	2.00E-38
GRMZM2G171279_P01	PF11834.5	KHA	808	870	4.00E-22
GRMZM2G171279_P01	PF12796.4	Ank_2	533	621	9.50E-15
GRMZM2G171279_P01	PF12796.4	Ank_2	632	712	9.20E-10

6.Blast top3 hits

Species	Gene ID	Blast Evalue
Arabidopsis thaliana	AT2G26650	0
Arabidopsis thaliana	AT2G25600	0
Arabidopsis thaliana	AT4G32500	0
Oryza sative	LOC_Os01g45990	0
Oryza sative	LOC_Os07g07910	0
Oryza sative	LOC_Os01g55200	0

7.Heuristic function module

Category	Family
GO	GO:0005515
GO	GO:0005249
GO	GO:0005242
GO	GO:0005216
GO	GO:0042802
GO	GO:0016021
GO	GO:0016020
GO	GO:0009651
GO	GO:0055085
GO	GO:0006811
GO	GO:0006813
GO	GO:0048767
GO	GO:0010107
GO	GO:0090333
GO	GO:0009414
GO	GO:0006810
Subcellular location	cytosol
Subcellular location	endoplasmic reticulum
Subcellular location	golgi
Subcellular location	mitochondrion
Subcellular location	plastid
Subcellular location	vacuole

8.Predicted function module

Category	Family
B73 maize kernal conditional network	GSE62778CFM51
B73 maize development conditional network	SRP010680CFM21
B73 maize development conditional network	SRP010680CFM52
B73 maize development conditional network	SRP010680CFM97
B73 maize development conditional network	SRP010680CFM164