GRMZM2G309380's detail annotation

1.Annotation (Gramene)

not available!

2.Location

ChromosomeStrandRegionStartEndUCSC
7+gene154646656154653119LINK

3.Sequences

Gene:
Promoter(up TSS 3kb):
Transcript:
CDS:
Protein:

4.Chromatin states

States in Promoter (2kb)States in GenebodyStates in Downstream (2kb)
E20,E26,E25,E11,E25,E13,E3,E11,E3,E3,E4,E5,E7,E6,E11,E3,E13,E11,E3,E4,E5,E4,E6,E13,E23,E3,E23,E26,E16,E29,E38,E28,

5.Protein domain

Protein IDPfam AccessionPfam AnnotationAlignment StartAlignment StartE-value
GRMZM2G309380_P01PF01657.14Stress-antifung471405.60E-20
GRMZM2G309380_P01PF01657.14Stress-antifung1692563.00E-10
GRMZM2G309380_P01PF07714.14Pkinase_Tyr3666353.90E-46

6.Blast top3 hits

SpeciesGene IDBlast Evalue
Arabidopsis thalianaAT4G052008.00E-141
Arabidopsis thalianaAT4G232802.00E-133
Arabidopsis thalianaAT4G232703.00E-131
Oryza sativeLOC_Os07g350040
Oryza sativeLOC_Os07g351400
Oryza sativeLOC_Os07g305100

7.Heuristic function module

CategoryFamily
GOGO:0016772
GOGO:0004672
GOGO:0004674
GOGO:0005524
GOGO:0006468
Subcellular locationendoplasmic reticulum
Subcellular locationgolgi
Subcellular locationplasma membrane
Subcellular locationvacuole

8.Predicted function module

CategoryFamily
B73 maize kernal conditional networkGSE62778CFM186
B73 leaf section conditional networkSRP018823CFM60

9.Expression pattern