GRMZM5G848696's detail annotation

1.Annotation (Gramene)

Annotation: glyoxylate reductase 2

2.Location

ChromosomeStrandRegionStartEndUCSC
3-gene219780649219783555LINK

3.Sequences

Gene:
Promoter(up TSS 3kb):
Transcript:
CDS:
Protein:

4.Chromatin states

States in Promoter (2kb)States in GenebodyStates in Downstream (2kb)
E8,E4,E6,E7,E5,E4,E11,E4E4,E5,E7,E6,E22,E6,E13E13,E23,E11,E6

5.Protein domain

Protein IDPfam AccessionPfam AnnotationAlignment StartAlignment StartE-value
GRMZM5G848696_P01PF03446.12NAD_binding_2532123.90E-39
GRMZM5G848696_P01PF14833.3NAD_binding_112153341.60E-28

6.Blast top3 hits

SpeciesGene IDBlast Evalue
Arabidopsis thalianaAT1G176505.00E-149
Arabidopsis thalianaAT3G255301.00E-103
Arabidopsis thalianaAT4G291201.00E-41
Oryza sativeLOC_Os01g392703.00E-177
Oryza sativeLOC_Os02g355001.00E-103
Oryza sativeLOC_Os01g539108.00E-34

7.Heuristic function module

CategoryFamily
GOGO:0016491
GOGO:0008442
GOGO:0004616
GOGO:0006098
GOGO:0006573
GOGO:0055114
Subcellular locationplastid

8.Predicted function module

CategoryFamily
B73 leaf section conditional networkSRP018823CFM153

9.Expression pattern

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 B73 global RNA-seq network8DAP_aleuroneanthesis_anther~5mm ear_anther10 days before cob emergence_preem…10 days before cob emergence_preemergence cobsilk emergence_postemergence cob5DAP_coleoptyle14DAP_ear primordiaIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 earSM_1mm middle of 10mm B73 earIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 ear~5mm ear_ear8DAP_nucellus8DAP_embryo8DAP_embryo-placento-chalazal region8DAP_embryo-surrounding region10DAP_embryo12DAP_embryo14DAP_embryo_od14DAP_embryo16DAP_embryo16DAP_embryo_od18DAP_embryo20DAP_embryo22DAP_embryo24DAP_embryo25DAP_embryo26DAP_embryo28DAP_embryo30DAP_embryo32DAP_embryo34DAP_embryo36DAP_embryo38DAP_embryo6DAP_endosperm-central starchy6DAP_endosperm8DAP_endosperm-central starchy8DAP_basal endosperm transfer layer8DAP_endosperm-conducting zone8DAP_endosperm-conducting zone_od8DAP_endosperm10DAP_endosperm12DAP_endopsperm12DAP_endosperm_od12DAP_endosperm14DAP_endosperm_od114DAP_endopsperm14DAP_endosperm_od15DAP_endosperm16DAP_endosperm16DAP_endosperm_od18DAP_endosperm19DAP_endosperm20DAP_endosperm22DAP_endosperm24DAP_endosperm25DAP_endosperm26DAP_endosperm28DAP_endosperm30DAP_endosperm32DAP_endosperm34DAP_endosperm36DAP_endosperm38DAP_endosperm9DAP_third leaf section19DAP_third leaf section29DAP_third leaf section39DAP_third leaf section49DAP_third leaf section59DAP_third leaf section69DAP_third leaf section79DAP_third leaf section89DAP_third leaf section99DAP_third leaf section109DAP_third leaf section119DAP_third leaf section129DAP_third leaf section139DAP_third leaf section149DAP_third leaf section1610DAG_young immature leaf12DAP_leaf14DAP_leaf apex14DAP_P6 leaf primordia14DAP_P7 leaf primordia14DAP_base of the leaf14DAP_maturing zone of the leaf14DAP_mesophyll from leaf slice 514DAP_leaf_control14DAP_leaf_first drought14DAP_leaf_third drought14DAP_leaf_control_set114DAP_leaf_control_set214DAP_leaf_aphid_2h14DAP_leaf_aphid_4h14DAP_leaf_aphid_8h14DAP_leaf_aphid_24h14DAP_leaf_aphid_48h14DAP_leaf_aphid_96h20DAS_leaf2-3 leaf stage_leaf_control2-3 leaf stage_leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_controlafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_saltafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_drought plus saltseedling_3rd leaftwo days after appearance of fourth lea…two days after appearance of fourth leaf_4th leafV5_tip of stage-2 leafV9_8th leafV9_11th leafV9_13th leafV9_immature leafVT_13th leafR2_13th leafmicrospore stage_microsporeanthesis_ovule8DAP_vascular region of the pedicel8DAP_pericarpanthesis_pollenanther dehiscence stage_pollenseedling_root14DAP_root_od114DAG_root_od214DAG_root_od3seedlings grown to 2 inches tall_root4DAP_root meristematic zone4DAP_root elongation zone4DAP_root differentiation zoneunknown_root6DAS_primary root4DAP_root meristematic4DAP_root elongation4DAP_root cortex4DAP_root stele9DAP_root3-4DAP_root(no root hairs)3-4DAP_root(with root hairs)28DAP_primary root_control28DAP_primary root_salt28DAP_crown root_control28DAP_crown root_salt28DAP_seminal root_control28DAP_seminal root_salt2-3 leaf stage_root_control2-3 leaf stage_root_droughtseedling_root_6h controlseedling_root_6h mild water deficitseedling_root_6h severe water deficitseedling_root_24h controlseedling_root_24h mild water deficitseedling_root_24h severe water deficitseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_control_6hseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_drought_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_control_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_drought_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_control_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_drought_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_control_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_drought_6h63DAP_stele of shoot-borne root_low N63DAP_stele of shoot-borne root_high N14DAP_SAM19DAG_SAMafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_controlafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_droughtafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_saltafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_drought plus saltseedling_SAM24H_germinating seed0DAP_seed2DAP_seed3DAP_seed4DAP_seed5DAP_seed6DAP_seed8DAP_seed10DAP_seed_od110DAP_seed10DAP_seed_od212DAP_seed12DAP_seed_od14DAP_seed14DAP_seed_od16DAP_seed16DAP_seed_od18DAP_seed20DAP_seed22DAP_seed24DAP_seed26DAP_seed28DAP_seed30DAP_seed32DAP_seed34DAP_seed36DAP_seed38DAP_seedseedling_controlseedling_coldseedling_heatseedling_saltseedling_UVseedling_control_od1seedling_droughtseedling6-7 DAP_above ground seedling9DAP_shoot12DAP_shoot14DAG_shoot_od114DAG_shoot_od214DAP_shootV2_shoot_control 24hV2_shoot_submerge 24hV2_shoot_submerge 72hseedling_shootseedlings grown to 2 inches tall_shoot2-3 leaf stage_stem_control2-3 leaf stage_stem_droughtV3_stem and SAManthesis_silk12DAP_tassel14DAP_tassel primordia1mm-2mm ear_tassel primordia3mm-4mm ear_tassel primordia5mm-7mm ear_tassel primordia10 days before tassel emergence_pree…10 days before tassel emergence_preemeergence tasseltassel emergence from whorl_postemer…tassel emergence from whorl_postemergence tassel020406080100-20120Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 tissue specific conditionalnetworkexpression trend for GRMZM5G848696 at B73 tissue specific conditional network8DAP_aleuroneanthesis_anther~5mm ear_anther10 days before cob emergence_preem…10 days before cob emergence_preemergence cobsilk emergence_postemergence cob5DAP_coleoptyle14DAP_ear primordiaIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 earSM_1mm middle of 10mm B73 earIM/SPM_1mm tip of 10mm B73 earFM_2mm base of 10mm B73 ear~5mm ear_ear8DAP_nucellus8DAP_embryo8DAP_embryo-placento-chalazal region8DAP_embryo-surrounding region10DAP_embryo12DAP_embryo14DAP_embryo_od14DAP_embryo16DAP_embryo16DAP_embryo_od18DAP_embryo20DAP_embryo22DAP_embryo24DAP_embryo25DAP_embryo26DAP_embryo28DAP_embryo30DAP_embryo32DAP_embryo34DAP_embryo36DAP_embryo38DAP_embryo6DAP_endosperm-central starchy6DAP_endosperm8DAP_endosperm-central starchy8DAP_endosperm-basal transfer laye8DAP_endosperm-conducting zone8DAP_endosperm-conducting zone_od8DAP_endosperm10DAP_endosperm12DAP_endopsperm12DAP_endosperm_od12DAP_endosperm14DAP_endosperm_od114DAP_endopsperm14DAP_endosperm_od15DAP_endosperm16DAP_endosperm16DAP_endosperm_od18DAP_endosperm19DAP_endosperm20DAP_endosperm22DAP_endosperm24DAP_endosperm25DAP_endosperm26DAP_endosperm28DAP_endosperm30DAP_endosperm32DAP_endosperm34DAP_endosperm36DAP_endosperm38DAP_endosperm9DAP_third leaf section19DAP_third leaf section29DAP_third leaf section39DAP_third leaf section49DAP_third leaf section59DAP_third leaf section69DAP_third leaf section79DAP_third leaf section89DAP_third leaf section99DAP_third leaf section109DAP_third leaf section119DAP_third leaf section129DAP_third leaf section139DAP_third leaf section149DAP_third leaf section1610DAG_young immature leaf12DAP_leaf14DAP_leaf apex14DAP_P6 leaf primordia14DAP_P7 leaf primordia14DAP_base of the leaf14DAP_maturing zone of the leaf14DAP_mesophyll from leaf slice 520DAS_leafseedling_3rd leaftwo days after appearance of fourth lea…two days after appearance of fourth leaf_4th leafV5_tip of stage-2 leafV9_8th leafV9_11th leafV9_13th leafV9_immature leafVT_13th leafR2_13th leafmicrospore stage_microsporeanthesis_ovule8DAP_vascular region of the pedicel8DAP_pericarpanthesis_pollenanther dehiscence stage_pollenseedling_root14DAP_root_od114DAG_root_od214DAG_root_od3seedlings grown to 2 inches tall_root4DAP_root meristematic zone4DAP_root elongation zone4DAP_root differentiation zoneunknown_root6DAS_primary root4DAP_root meristematic4DAP_root elongation4DAP_root cortex4DAP_root stele9DAP_root3-4DAP_root(no root hairs)3-4DAP_root(with root hairs)14DAP_SAM19DAG_SAMseedling_SAM24H_germinating seed0DAP_seed2DAP_seed3DAP_seed4DAP_seed5DAP_seed6DAP_seed8DAP_seed10DAP_seed_od110DAP_seed10DAP_seed_od212DAP_seed12DAP_seed_od14DAP_seed14DAP_seed_od16DAP_seed16DAP_seed_od18DAP_seed20DAP_seed22DAP_seed24DAP_seed26DAP_seed28DAP_seed30DAP_seed32DAP_seed34DAP_seed36DAP_seed38DAP_seedseedling6-7 DAP_above ground seedling9DAP_shoot12DAP_shoot14DAG_shoot_od114DAG_shoot_od214DAP_shootseedling_shootseedlings grown to 2 inches tall_shootV3_stem and SAManthesis_silk12DAP_tassel14DAP_tassel primordia1mm-2mm ear_tassel primordia3mm-4mm ear_tassel primordia5mm-7mm ear_tassel primordia10 days before tassel emergence_pree…10 days before tassel emergence_preemeergence tasseltassel emergence from whorl_postemer…tassel emergence from whorl_postemergence tassel-100102030405060708090Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 abiotic stress conditionalnetworkexpression trend for GRMZM5G848696 at B73 abiotic stress conditional network14DAP_leaf_control14DAP_leaf_first drought14DAP_leaf_third drought2-3 leaf stage_leaf_control2-3 leaf stage_leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_controlafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_droughtafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_saltafter 7 additional days of recovery_you…after 7 additional days of recovery_youngest wrapped leaf_drought plus salt28DAP_primary root_control28DAP_primary root_salt28DAP_crown root_control28DAP_crown root_salt28DAP_seminal root_control28DAP_seminal root_salt2-3 leaf stage_root_control2-3 leaf stage_root_droughtseedling_root_6h controlseedling_root_6h mild water deficitseedling_root_6h severe water deficitseedling_root_24h controlseedling_root_24h mild water deficitseedling_root_24h severe water deficitseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_control_6hseedling_primary root meristematic zon…seedling_primary root meristematic zone (apical 2mm)_drought_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_control_6hseedling_primary root elongation zone_…seedling_primary root elongation zone_drought_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_control_6hseedling_primary root stele (basal of el…seedling_primary root stele (basal of elongation zone)_drought_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_control_6hseedling_primary root cortex (basal of …seedling_primary root cortex (basal of elongation zone)_drought_6h63DAP_stele of shoot-borne root_low N63DAP_stele of shoot-borne root_high Nafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_controlafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_droughtafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_saltafter 10 days of treatment_SAM and a f…after 10 days of treatment_SAM and a few surrounding developing leaf_drought plus saltseedling_controlseedling_coldseedling_heatseedling_saltseedling_UVseedling_control_od1seedling_droughtV2_shoot_control 24hV2_shoot_submerge 24hV2_shoot_submerge 72h2-3 leaf stage_stem_control2-3 leaf stage_stem_drought020406080100-20120Highcharts.com

Created with Highcharts 5.0.14log2(expression profile data)expression trend for GRMZM5G848696 at B73 global Microarray network24H_Germinating Seed6DAS_GH_Coleoptile6DAS_GH_Primary RootV1_GH_Primary RootVE_Whole SeedlingVE_Primary RootV1_Pooled LeavesV1_Stem and SAMV4_Stem and SAMV3_Stem and SAMV3_First Leaf and SheathV3_Topmost LeafV5_Shoot TipV5_First InternodeV5_Tip of stage 2 LeafV5_Base of stage 2 LeafV7_First InternodeV7_Tip of stage 2 LeafV7_Base of stage 2 LeafV9_Fourth InternodeV9_Eighth LeafV9_Eleventh LeafV9_Thirteenth LeafV9_Immature LeavesV13_Immature TasselV18_Meiotic TasselV18_Immature CobVT_Thirteenth LeafR1_Pre pollination CobR1_SilksR1_AnthersR1_Innermost HuskR2_Thirteenth LeafR2_Outer HuskR2_Innermost Husk2DAP_Whole Seed4DAP_Whole Seed6DAP_Whole Seed8DAP_Whole Seed10DAP_Whole Seed12DAP_Whole Seed12DAP_Endosperm14DAP_Whole Seed14DAP_Endosperm16DAP_Whole Seed16DAP_Endosperm16DAP_Embryo18DAP_Whole Seed18DAP_Endosperm18DAP_Embryo18DAP_Pericarp20DAP_Whole Seed20DAP_Endosperm20DAP_Embryo22DAP_Whole Seed22DAP_Endosperm22DAP_Embryo24DAP_Whole Seed24DAP_Endosperm24DAP_Embryo77.588.599.51010.56.511Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at Mo17 global RNA-seq networkcoleoptyleembryoendospermleafrootSAMshoottassel05101520253035-5Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 biotic stress conditionalnetwork (14DAP_leaf)expression trend for GRMZM5G848696 at B73 biotic stress conditional network (14DAP_leaf)control1control2aphid_2haphid_4haphid_8haphid_24haphid_48haphid_96h33.544.555.566.577.588.599.5Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 maize embryo andendosperm conditional networkexpression trend for GRMZM5G848696 at B73 maize embryo and endosperm conditional network0DAP2DAP4DAP6DAP8DAP10DAP12DAP14DAP16DAP18DAP20DAP22DAP24DAP26DAP28DAP30DAP32DAP34DAP36DAP38DAP01234567891011Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 maize 8 day kernelconditional networkexpression trend for GRMZM5G848696 at B73 maize 8 day kernel conditional networkcentral_starchy_endosperm(CSE)conducting_zone(CZ)embryo_surrounding_region(ESR)basal_endosperm_transfer_layer(BETL)aleurone(AL)embryo(EMB)placenta_chalazal_region(PC)nucellus(NU)pericarp(PE)vascular_region_of_the_pedicel(PED)00.511.522.533.5-0.5Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 maize developmentconditional networkexpression trend for GRMZM5G848696 at B73 maize development conditional network24H_germinating seed6DAS_primary rootV3_stem and SAMV5_tip of stage-2 leafV9_immature leafV9_13th leafV9_11th leafV9_8th leafVT_13th leafR2_13th leaf10DAP_seed12DAP_seed14DAP_seed16DAP_seed12DAP_endopsperm14DAP_endopsperm16DAP_endosperm16DAP_embryo010203040506070-10Highcharts.com

Created with Highcharts 5.0.14expression profile dataexpression trend for GRMZM5G848696 at B73 maize 3rd leaf sectionconditional networkexpression trend for GRMZM5G848696 at B73 maize 3rd leaf section conditional networksection1section2section3section4section5section6section7section8section9section10section11section12section13section14section16152025303540455010Highcharts.com

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