| Category | Annotation | p-value | q-value |
|---|
| GO:0009507 | chloroplast,GOslim:cellular_component | 3.79E-178 | 4.23E-174 |
| GO:0009535 | chloroplast thylakoid membrane,GOslim:cellular_component | 4.38E-102 | 2.45E-98 |
| GO:0009941 | chloroplast envelope,GOslim:cellular_component | 2.88E-84 | 1.07E-80 |
| GO:0009570 | chloroplast stroma,GOslim:cellular_component | 1.76E-76 | 4.90E-73 |
| GO:0009534 | chloroplast thylakoid,GOslim:cellular_component | 1.80E-72 | 4.01E-69 |
| GO:0009579 | thylakoid,GOslim:cellular_component | 5.02E-72 | 9.35E-69 |
| zma00195 | Photosynthesis | 1.91E-63 | 3.05E-60 |
| GO:0010287 | plastoglobule,GOslim:cellular_component | 1.33E-32 | 1.65E-29 |
| GO:0031977 | thylakoid lumen,GOslim:cellular_component | 2.39E-27 | 2.67E-24 |
| GO:0009523 | photosystem II,GOslim:cellular_component | 3.15E-27 | 3.20E-24 |
| GO:0009654 | photosystem II oxygen evolving complex,GOslim:cellular_component | 2.31E-21 | 2.15E-18 |
| GO:0009765 | photosynthesis, light harvesting,GOslim:biological_process | 3.10E-20 | 2.67E-17 |
| GO:0016020 | membrane,GOslim:cellular_component | 9.72E-20 | 7.76E-17 |
| GO:0000502 | proteasome complex,GOslim:cellular_component | 5.72E-19 | 4.26E-16 |
| GO:0048046 | apoplast,GOslim:cellular_component | 6.88E-18 | 4.52E-15 |
| zma00196 | Photosynthesis - antenna proteins | 6.56E-18 | 4.52E-15 |
| plastid | plastid | 9.01E-17 | 5.59E-14 |
| GO:0009522 | photosystem I,GOslim:cellular_component | 8.91E-16 | 5.24E-13 |
| GO:0009637 | response to blue light,GOslim:biological_process | 2.03E-15 | 1.13E-12 |
| zma03050 | Proteasome | 2.40E-15 | 1.22E-12 |
| GO:0009543 | chloroplast thylakoid lumen,GOslim:cellular_component | 2.38E-15 | 1.22E-12 |
| GO:0010114 | response to red light,GOslim:biological_process | 5.63E-15 | 2.73E-12 |
| GO:0019898 | extrinsic component of membrane,GOslim:cellular_component | 8.62E-15 | 4.01E-12 |
| GO:0010218 | response to far red light,GOslim:biological_process | 4.28E-13 | 1.91E-10 |
| GO:0009658 | chloroplast organization,GOslim:biological_process | 3.26E-12 | 1.40E-09 |
| zma_M00611 | Oxygenic photosynthesis in plants and cyanobacteria | 4.77E-12 | 1.98E-09 |
| GO:0030163 | protein catabolic process,GOslim:biological_process | 4.23E-11 | 1.69E-08 |
| GO:0009538 | photosystem I reaction center,GOslim:cellular_component | 1.68E-10 | 6.45E-08 |
| GO:0051537 | 2 iron, 2 sulfur cluster binding,GOslim:molecular_function | 2.51E-10 | 9.36E-08 |
| GO:0000166 | nucleotide binding,GOslim:molecular_function | 3.78E-10 | 1.36E-07 |
| GO:0051603 | proteolysis involved in cellular protein catabolic process,GOslim:biological_process | 4.98E-10 | 1.74E-07 |
| GO:0008266 | poly(U) RNA binding,GOslim:molecular_function | 9.23E-10 | 3.03E-07 |
| zma_M00341 | Proteasome, 19S regulatory particle (PA700) | 8.95E-10 | 3.03E-07 |
| GO:0008233 | peptidase activity,GOslim:molecular_function | 1.08E-09 | 3.44E-07 |
| GO:0005839 | proteasome core complex,GOslim:cellular_component | 1.16E-09 | 3.61E-07 |
| GO:0051536 | iron-sulfur cluster binding,GOslim:molecular_function | 2.78E-09 | 8.39E-07 |
| zma00710 | Carbon fixation in photosynthetic organisms | 3.07E-09 | 9.02E-07 |
| GO:0004298 | threonine-type endopeptidase activity,GOslim:molecular_function | 5.47E-09 | 1.57E-06 |
| GO:0009773 | photosynthetic electron transport in photosystem I,GOslim:biological_process | 6.00E-09 | 1.68E-06 |
| GO:0004175 | endopeptidase activity,GOslim:molecular_function | 1.08E-08 | 2.95E-06 |
| GO:0042651 | thylakoid membrane,GOslim:cellular_component | 1.99E-08 | 5.30E-06 |
| GO:0005737 | cytoplasm,GOslim:cellular_component | 3.98E-08 | 1.03E-05 |
| pathwayID:CALVIN-PWY | Calvin-Benson-Bassham cycle | 7.87E-08 | 2.00E-05 |
| GO:0016987 | sigma factor activity,GOslim:molecular_function | 8.61E-08 | 2.14E-05 |
| GO:0009416 | response to light stimulus,GOslim:biological_process | 9.93E-08 | 2.41E-05 |
| GO:0010206 | photosystem II repair,GOslim:biological_process | 1.04E-07 | 2.47E-05 |
| GO:0009409 | response to cold,GOslim:biological_process | 1.31E-07 | 3.05E-05 |
| GO:0010207 | photosystem II assembly,GOslim:biological_process | 1.66E-07 | 3.78E-05 |
| zma_M00340 | Proteasome, 20S core particle | 2.15E-07 | 4.71E-05 |
| zma_M00165 | Reductive pentose phosphate cycle (Calvin cycle) | 2.15E-07 | 4.71E-05 |
| GO:0015995 | chlorophyll biosynthetic process,GOslim:biological_process | 2.43E-07 | 5.22E-05 |
| GO:0010319 | stromule,GOslim:cellular_component | 3.51E-07 | 7.40E-05 |
| GO:0008540 | proteasome regulatory particle, base subcomplex,GOslim:cellular_component | 3.87E-07 | 7.98E-05 |
| GO:0006508 | proteolysis,GOslim:biological_process | 3.93E-07 | 7.98E-05 |
| zma00906 | Carotenoid biosynthesis | 5.70E-07 | 0.000113791 |
| GO:0042742 | defense response to bacterium,GOslim:biological_process | 1.27E-06 | 0.000249585 |
| GO:0080167 | response to karrikin,GOslim:biological_process | 3.56E-06 | 0.000685683 |
| GO:0009767 | photosynthetic electron transport chain,GOslim:biological_process | 5.14E-06 | 0.000972963 |
| zma_M00532 | Photorespiration | 6.88E-06 | 0.001260071 |
| GO:0031072 | heat shock protein binding,GOslim:molecular_function | 6.88E-06 | 0.001260071 |
| GO:0010196 | nonphotochemical quenching,GOslim:biological_process | 7.13E-06 | 0.001284901 |
| pathwayID:PWY-101 | photosynthesis light reactions | 7.54E-06 | 0.001336951 |
| GO:0046872 | metal ion binding,GOslim:molecular_function | 8.11E-06 | 0.001416447 |
| GO:0009533 | chloroplast stromal thylakoid,GOslim:cellular_component | 1.13E-05 | 0.001949837 |
| GO:0016491 | oxidoreductase activity,GOslim:molecular_function | 1.18E-05 | 0.002004095 |
| pathwayID:GLUCONEO-PWY | gluconeogenesis I | 1.68E-05 | 0.002794832 |
| GO:0017111 | nucleoside-triphosphatase activity,GOslim:molecular_function | 1.82E-05 | 0.002990645 |
| GO:0015035 | protein disulfide oxidoreductase activity,GOslim:molecular_function | 1.96E-05 | 0.003180375 |
| GO:0045454 | cell redox homeostasis,GOslim:biological_process | 2.32E-05 | 0.00368233 |
| pathwayID:CYANCAT-PWY | cyanate degradation | 2.40E-05 | 0.00368233 |
| GO:0010027 | thylakoid membrane organization,GOslim:biological_process | 2.41E-05 | 0.00368233 |
| family:TF | subfamily:CO-like | 2.40E-05 | 0.00368233 |
| GO:0009706 | chloroplast inner membrane,GOslim:cellular_component | 2.58E-05 | 0.003888395 |
| GO:0009768 | photosynthesis, light harvesting in photosystem I,GOslim:biological_process | 2.66E-05 | 0.003969239 |
| zma00860 | Porphyrin and chlorophyll metabolism | 3.01E-05 | 0.004424635 |
| zma_M00167 | Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P | 3.61E-05 | 0.005242643 |
| GO:0016853 | isomerase activity,GOslim:molecular_function | 4.17E-05 | 0.005968701 |
| GO:0001053 | plastid sigma factor activity,GOslim:molecular_function | 4.70E-05 | 0.006646099 |
| GO:0055114 | oxidation-reduction process,GOslim:biological_process | 4.91E-05 | 0.00686333 |
| GO:0010205 | photoinhibition,GOslim:biological_process | 6.79E-05 | 0.009371273 |
| GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone),GOslim:cellular_component | 7.68E-05 | 0.010456574 |
| GO:0016829 | lyase activity,GOslim:molecular_function | 7.90E-05 | 0.010629089 |
| GO:0016168 | chlorophyll binding,GOslim:molecular_function | 9.03E-05 | 0.012007747 |
| GO:0015969 | guanosine tetraphosphate metabolic process,GOslim:biological_process | 0.000118185 | 0.014834613 |
| GO:0009508 | plastid chromosome,GOslim:cellular_component | 0.000117873 | 0.014834613 |
| GO:0004176 | ATP-dependent peptidase activity,GOslim:molecular_function | 0.000117873 | 0.014834613 |
| GO:0016123 | xanthophyll biosynthetic process,GOslim:biological_process | 0.000118185 | 0.014834613 |
| GO:0010277 | chlorophyllide a oxygenase [overall] activity,GOslim:molecular_function | 0.000118185 | 0.014834613 |
| GO:0022900 | electron transport chain,GOslim:biological_process | 0.000128258 | 0.015920066 |
| GO:0006352 | DNA-templated transcription, initiation,GOslim:biological_process | 0.000133564 | 0.016396491 |
| GO:0016776 | phosphotransferase activity, phosphate group as acceptor,GOslim:molecular_function | 0.000151481 | 0.01819604 |
| GO:0019252 | starch biosynthetic process,GOslim:biological_process | 0.000151481 | 0.01819604 |
| mitochondrion | mitochondrion | 0.000163395 | 0.019418436 |
| GO:0005986 | sucrose biosynthetic process,GOslim:biological_process | 0.000173712 | 0.020427252 |
| GO:0016787 | hydrolase activity,GOslim:molecular_function | 0.000196203 | 0.022831601 |
| GO:0016740 | transferase activity,GOslim:molecular_function | 0.000232819 | 0.026698491 |
| GO:0050661 | NADP binding,GOslim:molecular_function | 0.000236279 | 0.026698491 |
| GO:0046686 | response to cadmium ion,GOslim:biological_process | 0.000236602 | 0.026698491 |
| GO:0004089 | carbonate dehydratase activity,GOslim:molecular_function | 0.000245876 | 0.027195488 |
| GO:0004332 | fructose-bisphosphate aldolase activity,GOslim:molecular_function | 0.000245876 | 0.027195488 |
| GO:0016117 | carotenoid biosynthetic process,GOslim:biological_process | 0.000297036 | 0.032366547 |
| GO:0005198 | structural molecule activity,GOslim:molecular_function | 0.000298422 | 0.032366547 |
| GO:0045157 | electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity,GOslim:molecular_function | 0.000308124 | 0.032782326 |
| zma_M00157 | F-type ATPase, prokaryotes and chloroplasts | 0.000308124 | 0.032782326 |
| GO:0003746 | translation elongation factor activity,GOslim:molecular_function | 0.000329242 | 0.034374347 |
| GO:0009817 | defense response to fungus, incompatible interaction,GOslim:biological_process | 0.000329242 | 0.034374347 |
| GO:0010193 | response to ozone,GOslim:biological_process | 0.0004207 | 0.043116984 |
| zma00630 | Glyoxylate and dicarboxylate metabolism | 0.000434742 | 0.044151117 |
| GO:0009644 | response to high light intensity,GOslim:biological_process | 0.000467604 | 0.047060673 |
| GO:0009295 | nucleoid,GOslim:cellular_component | 0.000484398 | 0.048315566 |
