MaizeCyc pathway
Module nameDescription
ALACAT2-PWYalanine degradation II (to D-lactate)
ALANINE-SYN2-PWYalanine biosynthesis II
ANAGLYCOLYSIS-PWYglycolysis III
ARGASEDEG-PWYarginine degradation I (arginase pathway)
ARGDEG-III-PWYarginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
ARGDEG-V-PWYarginine degradation X (arginine monooxygenase pathway)
ARG-PRO-PWYarginine degradation VI (arginase 2 pathway)
ARGSPECAT-PWYspermine biosynthesis
ARGSYNBSUB-PWYarginine biosynthesis II (acetyl cycle)
ARGSYN-PWYarginine biosynthesis I
ARO-PWYchorismate biosynthesis I
ASPARAGINE-BIOSYNTHESISasparagine biosynthesis I
ASPARAGINE-DEG1-PWYasparagine degradation I
ASPARAGINESYN-PWYasparagine biosynthesis II
ASPARTATESYN-PWYaspartate biosynthesis
ASPSYNII-PWYcyanide detoxification
BGALACT-PWYlactose degradation III
BSUBPOLYAMSYN-PWYspermidine biosynthesis I
CALVIN-PWYCalvin-Benson-Bassham cycle
CHLOROPHYLL-SYNchlorophyllide a biosynthesis I
CITRULBIO-PWYcitrulline biosynthesis
CITRULLINE-DEG-PWYcitrulline degradation
COA-PWY-1coenzyme A biosynthesis
COLANSYN-PWYcolanic acid building blocks biosynthesis
CYANCAT-PWYcyanate degradation
CYSTSYN-PWYcysteine biosynthesis I
DETOX1-PWYsuperoxide radicals degradation
ETHYL-PWYethylene biosynthesis from methionine
FASYN-ELONG-PWYfatty acid elongation -- saturated
GALACTMETAB-PWYUDP-galactose biosynthesis (salvage pathway from galactose using UDP-glucose)
GLUCONEO-PWYgluconeogenesis I
GLUCOSE1PMETAB-PWYglucose and glucose-1-phosphate degradation
GLUDEG-I-PWYglutamate degradation III (via 4-aminobutyrate)
GLUGLNSYN-PWYglutamate biosynthesis IV
GLUTAMATE-DEG1-PWYglutamate degradation I
GLUTAMATE-SYN2-PWYglutamate biosynthesis II
GLUTAMINDEG-PWYglutamine degradation I
GLUTATHIONESYN-PWYglutathione biosynthesis
GLUTORN-PWYornithine biosynthesis
GLUT-REDOX-PWYglutathione redox reactions II
GLYCLEAV-PWYglycine cleavage complex
GLYCOCAT-PWYglycogen degradation I
GLYCOGENSYNTH-PWYglycogen biosynthesis I (from ADP-D-Glucose)
GLYCOLYSISglycolysis I
GLYOXDEG-PWYglycolate and glyoxylate degradation II
GLYOXYLATE-BYPASSglyoxylate cycle
GLYSYN-PWYglycine biosynthesis I
GLYSYN-THR-PWYglycine biosynthesis IV
HEME-BIOSYNTHESIS-IIheme biosynthesis from uroporphyrinogen-III I
HEXPPSYN-PWYhexaprenyl diphosphate biosynthesis
HISTSYN-PWYhistidine biosynthesis
HOMOSERSYN-PWYhomoserine biosynthesis
HOMOSER-THRESYN-PWYthreonine biosynthesis from homoserine
ILEUDEG-PWYisoleucine degradation I
ILEUSYN-PWYisoleucine biosynthesis I (from threonine)
LEU-DEG2-PWYleucine degradation I
LEUSYN-PWYleucine biosynthesis
LIPAS-PWYtriacylglycerol degradation
LIPASYN-PWYphospholipases
LYSINE-DEG1-PWYlysine degradation II
MALATE-ASPARTATE-SHUTTLE-PWYaspartate degradation II
MANNCAT-PWYD-mannose degradation
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESISdolichyl-diphosphooligosaccharide biosynthesis
METHIONINE-DEG1-PWYmethionine degradation I (to homocysteine)
N2FIX-PWYnitrogen fixation
NONMEVIPP-PWYmethylerythritol phosphate pathway
NONOXIPENT-PWYpentose phosphate pathway (non-oxidative branch)
OXIDATIVEPENT-PWYpentose phosphate pathway (oxidative branch)
P21-PWYpentose phosphate pathway (partial)
P401-PWYcyanide degradation
PHESYNphenylalanine biosynthesis I
PHOSLIPSYN2-PWYphospholipid biosynthesis II
PLPSAL-PWY-1pyridoxal 5'-phosphate salvage pathway (cytosolic)
PROSYN-PWYproline biosynthesis I
PROUT-PWYproline degradation
PWY0-1021alanine biosynthesis III
PWY0-1182trehalose degradation II (trehalase)
PWY0-1264biotin-carboxyl carrier protein assembly
PWY0-1299arginine dependent acid resistance
PWY0-1301melibiose degradation
PWY0-1305glutamate dependent acid resistance
PWY0-1313acetate conversion to acetyl-CoA
PWY0-1319CDP-diacylglycerol biosynthesis II
PWY0-1334NADH to cytochrome bd oxidase electron transfer
PWY0-1353succinate to cytochrome bd oxidase electron transfer
PWY0-1391methylthioadenosine degradation
PWY0-1507biotin biosynthesis from 7-keto-8-aminopelargonate (mitochondrial)
PWY0-163salvage pathways of pyrimidine ribonucleotides
PWY0-166pyrimidine deoxyribonucleotides de novo biosynthesis I
PWY0-381glycerol degradation I
PWY0-41allantoin degradation IV (anaerobic)
PWY0-501lipoate biosynthesis and incorporation I
PWY0-541cyclopropane fatty acid (CFA) biosynthesis
PWY0-662PRPP biosynthesis I
PWY0-823arginine degradation III (arginine decarboxylase/agmatinase pathway)
PWY-1001cellulose biosynthesis
PWY-101photosynthesis light reactions
PWY-102gibberellin inactivation I (2β-hydroxylation)
PWY-1042glycolysis IV (plant cytosol)
PWY-1061homogalacturonan biosynthesis
PWY-1081homogalacturonan degradation
PWY-1121suberin biosynthesis
PWY-1141xanthophyll cycle
PWY-116coniferin metabolism
PWY-1422vitamin E biosynthesis
PWY-1722formaldehyde oxidation V (tetrahydrofolate pathway)
PWY-1741IAA conjugate biosynthesis I
PWY-181photorespiration
PWY-1822IAA biosynthesis II
PWY-1881formate oxidation to CO2
PWY1F-353glycine betaine biosynthesis III (plants)
PWY1F-467phenylpropanoid biosynthesis, initial reactions
PWY1F-823leucopelargonidin and leucocyanidin biosynthesis
PWY1F-FLAVSYNflavonoid biosynthesis
PWY-2putrescine degradation IV
PWY-2161folate polyglutamylation
PWY-2181free phenylpropanoid acid biosynthesis
PWY-2261ascorbate glutathione cycle
PWY-2301myo-inositol biosynthesis
PWY-241C4 photosynthetic carbon assimilation cycle
PWY-2541plant sterol biosynthesis
PWY-2582brassinosteroid biosynthesis II
PWY-2681trans-zeatin biosynthesis
PWY-2781cis-zeatin biosynthesis
PWY-282cuticular wax biosynthesis
PWY-2841cytokinins degradation
PWY-2902cytokinins-O-glucoside biosynthesis
PWY2OL-4linalool biosynthesis
PWY-3041monoterpene biosynthesis
PWY-3101flavonol biosynthesis
PWY-3261UDP-L-rhamnose biosynthesis
PWY-3282ammonia assimilation cycle II
PWY-3385choline biosynthesis I
PWY-3461tyrosine biosynthesis II
PWY-3462phenylalanine biosynthesis II
PWY-3561choline biosynthesis III
PWY-361phenylpropanoid biosynthesis
PWY-3781aerobic respiration -- electron donor II
PWY-381nitrate reduction II (assimilatory)
PWY-3821galactose degradation III
PWY-3841folate transformations II (plants)
PWY-3861mannitol degradation II
PWY-3921pantothenate biosynthesis I
PWY-3941β-alanine biosynthesis II
PWY-3981β-alanine biosynthesis I
PWY-3982uracil degradation II (reductive)
PWY3O-210glutamate degradation IX (via 4-aminobutyrate)
PWY3O-450phosphatidylcholine biosynthesis I
PWY-401glycolipid biosynthesis
PWY-4041γ-glutamyl cycle
PWY-4081glutathione redox reactions I
PWY-4101sorbitol degradation I
PWY-4261glycerol degradation IV
PWY-43putrescine biosynthesis II
PWY-4341glutamate biosynthesis V
PWY-4361methionine salvage I
PWY-4381fatty acid biosynthesis initiation I
PWY-4441DIMBOA-glucoside degradation
PWY-4541lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3)
PWY-4562lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3)
PWY-46611D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)
PWY-4702phytate degradation I
PWY-4781phytate degradation II
PWY-4821UDP-D-xylose and UDP-D-glucuronate biosynthesis
PWY-4841UDP-D-glucuronate biosynthesis (from myo-inositol)
PWY-4861UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)
PWY-4942cyclopropane and cyclopropene fatty acid biosynthesis
PWY-4981proline biosynthesis II (from arginine)
PWY-4983citrulline-nitric oxide cycle
PWY-4984urea cycle
PWY4FS-2phosphatidylcholine biosynthesis II
PWY4FS-3phosphatidylcholine biosynthesis III
PWY4FS-4phosphatidylcholine biosynthesis IV
PWY4FS-6phosphatidylethanolamine biosynthesis II
PWY4FS-7phosphatidylglycerol biosynthesis I (plastidic)
PWY4FS-8phosphatidylglycerol biosynthesis II (non-plastidic)
PWY-5032ent-kaurene biosynthesis I
PWY-5034GA12 biosynthesis
PWY-5035gibberellin biosynthesis III (early C-13 hydroxylation)
PWY-5041S-adenosyl-L-methionine cycle II
PWY-5057valine degradation II
PWY-5059pinobanksin biosynthesis
PWY-5060luteolin biosynthesis
PWY-5064chlorophyll a biosynthesis II
PWY-5067glycogen biosynthesis II (from UDP-D-Glucose)
PWY-5068chlorophyll cycle
PWY-5076leucine degradation III
PWY-5080very long chain fatty acid biosynthesis
PWY-5083NAD/NADH phosphorylation and dephosphorylation
PWY-50842-ketoglutarate dehydrogenase complex
PWY-5086chlorophyll a biosynthesis I
PWY-5097lysine biosynthesis VI
PWY-5098chlorophyll a degradation
PWY-5111CMP-KDO biosynthesis II (from D-arabinose 5-phosphate)
PWY-5120geranylgeranyldiphosphate biosynthesis
PWY-5122geranyl diphosphate biosynthesis
PWY-5123trans, trans-farnesyl diphosphate biosynthesis
PWY-5125-1anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside)
PWY-5129sphingolipid biosynthesis (plants)
PWY-5136fatty acid β-oxidation II (core pathway)
PWY-5137fatty acid β-oxidation III (unsaturated, odd number)
PWY-5138fatty acid β-oxidation IV (unsaturated, even number)
PWY-5142acyl-ACP thioesterase pathway
PWY-5143fatty acid activation
PWY-5147oleate biosynthesis I (plants)
PWY-5148acyl-CoA hydrolysis
PWY-5152leucodelphinidin biosynthesis
PWY-5153anthocyanin biosynthesis (delphinidin 3-O-glucoside)
PWY-5168ferulate and sinapate biosynthesis
PWY-5172acetyl-CoA biosynthesis (from citrate)
PWY-5176coumarin biosynthesis (via 2-coumarate)
PWY-5188tetrapyrrole biosynthesis I
PWY-5194siroheme biosynthesis
PWY-5269cardiolipin biosynthesis II
PWY-5271phaseic acid biosynthesis
PWY-5278sulfite oxidation III
PWY-5279sulfite oxidation II
PWY-5307gentiodelphin biosynthesis
PWY-5326sulfite oxidation IV
PWY-5337stachyose biosynthesis
PWY-5340sulfate activation for sulfonation
PWY-5349esculetin biosynthesis
PWY-5350thiosulfate disproportionation III (rhodanese)
PWY-5366palmitoleate biosynthesis II
PWY-5367petroselinate biosynthesis
PWY-5381-1pyridine nucleotide cycling (cytosolic)
PWY-5391syringetin biosynthesis
PWY-5403betaxanthin biosynthesis (via dopamine)
PWY-5409divinyl ether biosynthesis II
PWY-5410traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
PWY-5434(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis
PWY-5441S-methylmethionine cycle
PWY-5456methylglyoxal degradation VII
PWY-5461betanidin degradation
PWY-5481pyruvate fermentation to lactate
PWY-5486pyruvate fermentation to ethanol II
PWY-561superpathway of glyoxylate cycle
PWY-5659GDP-mannose biosynthesis
PWY-5661GDP-glucose biosynthesis
PWY-5667CDP-diacylglycerol biosynthesis I
PWY-5669phosphatidylethanolamine biosynthesis I
PWY-5670epoxysqualene biosynthesis
PWY-5686uridine-5'-phosphate biosynthesis
PWY-5687pyrimidine ribonucleotides interconversion
PWY-5690TCA cycle variation III (eukaryotic)
PWY-5691urate degradation to allantoin
PWY-5697allantoin degradation to ureidoglycolate I (urea producing)
PWY-5698allantoin degradation to ureidoglycolate II (ammonia producing)
PWY-5704urea degradation II
PWY-5723Rubisco shunt
PWY-5751phenylethanol biosynthesis
PWY-5766glutamate degradation X
PWY-5767glycogen degradation III
PWY-5785di-trans,poly-cis-undecaprenyl phosphate biosynthesis
PWY-57911,4-dihydroxy-2-naphthoate biosynthesis II (plants)
PWY-5800xylan biosynthesis
PWY-5805-ARAnonaprenyl diphosphate biosynthesis III
PWY-5807heptaprenyl diphosphate biosynthesis
PWY-581IAA biosynthesis I
PWY-5826hypoglycin biosynthesis
PWY-5868simplecoumarins biosynthesis
PWY-5871ubiquinol-9 biosynthesis (eukaryotic)
PWY-5872ubiquinol-10 biosynthesis (eukaryotic)
PWY-5874heme degradation
PWY-5885wax esters biosynthesis II
PWY-58864-hydroxyphenylpyruvate biosynthesis
PWY-59012,3-dihydroxybenzoate biosynthesis
PWY-5905hypusine biosynthesis
PWY-59122'-deoxymugineic acid phytosiderophore biosynthesis
PWY-5921L-glutamine biosynthesis II (tRNA-dependent)
PWY-5934Fe(III)-reduction and Fe(II) transport
PWY-5936xyloglucan biosynthesis
PWY-5941glycogen degradation II
PWY-5943β-carotene biosynthesis
PWY-5944zeaxanthin biosynthesis
PWY-5945antheraxanthin and violaxanthin biosynthesis
PWY-5946δ-carotene biosynthesis
PWY-5947lutein biosynthesis
PWY-5957nicotianamine biosynthesis
PWY-5971palmitate biosynthesis II (bacteria and plants)
PWY-5973cis-vaccenate biosynthesis
PWY-5988wound-induced proteolysis I
PWY-5989stearate biosynthesis II (plants)
PWY-5995linoleate biosynthesis I (plants)
PWY-6GDP-L-fucose biosynthesis II (from L-fucose)
PWY-6012acyl carrier protein metabolism
PWY-6018seed germination protein turnover
PWY-6019pseudouridine degradation
PWY-60292,3-trans-flavanols biosynthesis
PWY-60352,3-cis-flavanols biosynthesis
PWY-6039chlorogenic acid biosynthesis I
PWY-6040chlorogenic acid biosynthesis II
PWY-6054dimethylsulfoniopropionate biosynthesis I (Wollastonia)
PWY-6055dimethylsulfoniopropionate biosynthesis II (Spartina)
PWY-6064methylquercetin biosynthesis
PWY-6118glycerol-3-phosphate shuttle
PWY-61215-aminoimidazole ribonucleotide biosynthesis I
PWY-61225-aminoimidazole ribonucleotide biosynthesis II
PWY-6124inosine-5'-phosphate biosynthesis II
PWY-6126adenosine nucleotides de novo biosynthesis
PWY-6135copper transport I
PWY-6137copper transport II
PWY-6147-16-hydroxymethyl-dihydropterin diphosphate biosynthesis
PWY-6151S-adenosyl-L-methionine cycle I
PWY-61643-dehydroquinate biosynthesis I
PWY-6196serine racemization
PWY-6199quercetinsulphates biosynthesis
PWY-621sucrose degradation III
PWY-622starch biosynthesis
PWY-6275β-caryophyllene biosynthesis
PWY-6277superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PWY-6281selenocysteine biosynthesis II (archaea and eukaryotes)
PWY-6299aldehyde oxidation I
PWY-63UDP-L-arabinose biosynthesis I (from UDP-xylose)
PWY-6303methyl indole-3-acetate interconversion
PWY-6305putrescine biosynthesis IV
PWY-6316aromatic polyketides biosynthesis
PWY-6317galactose degradation I (Leloir pathway)
PWY-6323benzoylanthranilate biosynthesis
PWY-6326camptothecin biosynthesis
PWY-6330acetaldehyde biosynthesis II
PWY-6333acetaldehyde biosynthesis I
PWY-6337dehydroscoulerine biosynthesis
PWY-6348phosphate acquisition
PWY-6351D-myo-inositol (1,4,5)-trisphosphate biosynthesis
PWY-63523-phosphoinositide biosynthesis
PWY-6357phosphate utilization in cell wall regeneration
PWY-6360flavonol glucosylation I
PWY-63611D-myo-inositol hexakisphosphate biosynthesis I (from Ins(1,4,5)P3)
PWY-6363D-myo-inositol (1,4,5)-trisphosphate degradation
PWY-6365D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis
PWY-6366D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis
PWY-6430thymine degradation
PWY-64354-hydroxybenzoate biosynthesis V
PWY-6440spermine and spermidine degradation II
PWY-6444benzoate biosynthesis II (CoA-independent, non-β-oxidative)
PWY-6446benzoate biosynthesis III (CoA-dependent, non-β-oxidative)
PWY-6457trans-cinnamoyl-CoA biosynthesis
PWY-6465ω-hydroxylation of caprate and laurate
PWY-6475-1trans-lycopene biosynthesis II (plants)
PWY-6482diphthamide biosynthesis
PWY-6510methanol oxidation to formaldehyde II
PWY-6515phloridzin biosynthesis
PWY-6520nonaprenyl diphosphate biosynthesis II
PWY-6527stachyose degradation
PWY-65354-aminobutyrate degradation I
PWY-65374-aminobutyrate degradation II
PWY-6543p-aminobenzoate biosynthesis (plastidic)
PWY-6549glutamine biosynthesis III
PWY-65541D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3)
PWY-6556pyrimidine ribonucleosides degradation II
PWY-6596adenosine nucleotides degradation I
PWY-6599guanine and guanosine salvage II
PWY-66GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PWY-6605adenine and adenosine salvage II
PWY-6606guanosine nucleotides degradation II
PWY-6613tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PWY-6614-1tetrahydrofolate biosynthesis (mitochondrial)
PWY66-162ethanol degradation IV (peroxisomal)
PWY-6619adenine and adenosine salvage VI
PWY66-21ethanol degradation II (cytosol)
PWY-6622heptadecane biosynthesis
PWY-6653ent -kaurene biosynthesis II
PWY-6689tRNA splicing
PWY-695abscisic acid biosynthesis
PWY-701methionine degradation II
PWY-702methionine biosynthesis II
PWY-735jasmonic acid biosynthesis
PWY-801homocysteine and cysteine interconversion
PWY-82UDP-L-arabinose biosynthesis II (from L-arabinose)
PWY-822fructan biosynthesis
PWY-83monolignol glucosides biosynthesis
PWY-84resveratrol biosynthesis
PWY-841purine nucleotides de novo biosynthesis II
PWY-842starch degradation
PWY-862fructan degradation
PWY-882ascorbate biosynthesis I (L-galactose pathway)
PWY-922mevalonate pathway I
PWYBWI-0α-carotene biosynthesis
PWYBWI-1pyridoxal 5'-phosphate biosynthesis II
PWYBWI-15thiamine diphosphate transport (Mitochondrial membrane)
PWYBWI-2riboflavin biosynthesis I (cytosolic)
PWYBWI-25Nicotinate transport (Plasma membrane)
PWYBWI-26NAD(+) transport (Peroxisomal membrane)
PWYBWI-27NAD+ transport (Mitochondrial/Plastidial membrane)
PWYBWI-3Thiamin biosynthesis (cytosolic)
PWYBWI-31biotin transport (Plasma membrane)
PWYBWI-36folate transport (Plastidial membrane)
PWYBWI-37folate monoglutamate transport (Vacuolar membrane)
PWYBWI-4pyridoxal 5'-phosphate salvage pathway (plastidic)
PWYBWI-410flavonoid and flavonol biosynthesis pathway leading to anthocyanin biosynthesis and accumulation
PWYBWI-4118ε-carotene biosynthesis
PWYBWI-43acyl-coenzyme A ester transport (Peroxisomal)
PWYBWI-5NADP biosynthesis (peroxisomal)
PWYBWI-67-Keto-8-aminopelarogonic acid synthesis (Peroxisomal)
PWYBWI-7glutamate removal from folates (vacuolar)
PWYBWI-7081carotenoid biosynthesis (from lycopene to carotene and xanthophyll)
PWYQT-4427sulfolipid biosynthesis
PWYQT-4429CO2 fixation into oxaloacetate
PWYQT-4432glutathione degradation
PWYQT-4436UDP-galactose biosynthesis
PWYQT-4437UDP-glucose biosynthesis (from glucose 6-phosphate)
PYRIDNUCSYN-PWY-1NAD biosynthesis I (from aspartate, plastidic)
PYRUVDEHYD-PWYacetyl-CoA biosynthesis (from pyruvate)
RIBOSYN2-PWY-1riboflavin biosynthesis I (plastidic)
SALVADEHYPOX-PWYadenosine nucleotides degradation II
SAM-PWYS-adenosyl-L-methionine biosynthesis
SERSYN-PWYserine biosynthesis
SO4ASSIM-PWYsulfate reduction I (assimilatory)
SUCSYN-PWYsucrose biosynthesis
SUCUTIL-PWYsucrose degradation I
SULFMETII-PWYsulfate reduction II (assimilatory)
THIOREDOX-PWYthioredoxin pathway
THISYNARA-PWY-1thiamine biosynthesis II (Plastidic)
TRESYN-PWYtrehalose biosynthesis I
TRIGLSYN-PWYtriacylglycerol biosynthesis
TRNA-CHARGING-PWYtRNA charging pathway
TRPSYN-PWYtryptophan biosynthesis
UDPNACETYLGALSYN-PWYUDP-N-acetyl-D-glucosamine biosynthesis II
VALDEG-PWYvaline degradation I
VALSYN-PWYvaline biosynthesis
XYLCAT-PWYxylose degradation I